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Gene: Fam131b (family with sequence similarity 131, member B) Rattus norvegicus

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Symbol:

Fam131b

Name:

family with sequence similarity 131, member B

RGD ID:

1560653

Description:

Orthologous to human FAM131B (family with sequence similarity 131 member B); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC500102; LOC500102

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	72,167,667 - 72,176,924 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	72,165,578 - 72,176,858 (-)	Ensembl				GRCr8
mRatBN7.2	4	71,201,037 - 71,210,292 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	71,201,038 - 71,210,228 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	76,120,807 - 76,129,994 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	72,034,064 - 72,043,251 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	70,453,523 - 70,462,710 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	71,703,872 - 71,713,268 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	71,703,873 - 71,713,063 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	136,508,269 - 136,517,492 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	70,082,502 - 70,091,693 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	66,131,530 - 66,140,721 (-)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,3',4,4',5-pentachlorobiphenyl (ISO)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

acrylamide (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

amitrole (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

calcitriol (ISO)

copper atom (ISO)

copper(0) (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

dorsomorphin (ISO)

endosulfan (EXP)

folic acid (ISO)

GSK-J4 (ISO)

lipopolysaccharide (ISO)

paracetamol (EXP)

perfluorooctanoic acid (EXP,ISO)

phenylmercury acetate (ISO)

resveratrol (ISO)

rotenone (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

testosterone (ISO)

titanium dioxide (ISO)

tributylstannane (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytosol (IEA,ISO)

nucleoplasm (IEA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334

Genomics

Comparative Map Data

Fam131b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	72,167,667 - 72,176,924 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	72,165,578 - 72,176,858 (-)	Ensembl				GRCr8
mRatBN7.2	4	71,201,037 - 71,210,292 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	71,201,038 - 71,210,228 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	76,120,807 - 76,129,994 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	72,034,064 - 72,043,251 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	70,453,523 - 70,462,710 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	71,703,872 - 71,713,268 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	71,703,873 - 71,713,063 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	136,508,269 - 136,517,492 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	70,082,502 - 70,091,693 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	66,131,530 - 66,140,721 (-)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI

FAM131B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	143,353,400 - 143,382,304 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	143,353,400 - 143,362,815 (-)	Ensembl			hg38	GRCh38
GRCh37	7	143,050,493 - 143,079,397 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	142,760,615 - 142,769,967 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	7	137,887,354 - 137,896,064 (-)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI
HuRef	7	137,387,873 - 137,396,553 (-)	NCBI		HuRef
CHM1_1	7	142,987,414 - 142,996,761 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	144,708,830 - 144,737,731 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	142,452,619 - 142,461,973 (-)	NCBI

Fam131b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	42,292,239 - 42,301,574 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	42,292,246 - 42,301,577 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	42,315,305 - 42,324,640 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	42,315,312 - 42,324,643 (-)	Ensembl			mm10	GRCm38
MGSCv37	6	42,265,311 - 42,274,639 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	42,247,391 - 42,254,187 (-)	NCBI		MGSCv36	mm8
Celera	6	42,259,719 - 42,269,136 (-)	NCBI		Celera
Cytogenetic Map	6	B2.1	NCBI
cM Map	6	20.6	NCBI

Fam131b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955494	311,848 - 318,591 (+)	Ensembl
ChiLan1.0	NW_004955494	311,849 - 318,591 (+)	NCBI	ChiLan1.0	ChiLan1.0

FAM131B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	180,206,196 - 180,235,027 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	32,216,453 - 32,245,280 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	135,348,077 - 135,377,017 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	147,838,049 - 147,866,163 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	147,838,049 - 147,866,163 (-)	Ensembl			panPan2	panpan1.1

FAM131B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	6,335,862 - 6,343,235 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	6,335,785 - 6,341,338 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	7,322,715 - 7,330,234 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	6,187,468 - 6,195,014 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	6,187,460 - 6,197,136 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	6,135,171 - 6,144,833 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	5,986,868 - 5,994,371 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	6,062,119 - 6,069,661 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Fam131b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	12,104,231 - 12,112,721 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936527	788,936 - 797,604 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936527	790,708 - 797,549 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FAM131B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	6,893,316 - 6,903,012 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	18	6,893,323 - 6,903,022 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	7,134,263 - 7,143,925 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FAM131B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	112,237,361 - 112,246,735 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	112,240,512 - 112,246,637 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666072	8,982,829 - 8,992,191 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fam131b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624800	11,408,092 - 11,414,026 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624800	11,408,059 - 11,417,021 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Fam131b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	97,894,595 - 97,903,828 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Fam131b
66 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	480
Count of miRNA genes:	254
Interacting mature miRNAs:	328
Transcripts:	ENSRNOT00000059447
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	39431983	123203361	Rat
1549843	Bw53	Body weight QTL 53		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	59753119	104753119	Rat
61445	Strs3	Sensitivity to stroke QTL 3	3		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	4	41400577	86400577	Rat
6893678	Bw108	Body weight QTL 108	2.6	0.006	body mass (VT:0001259)	body weight (CMO:0000012)	4	44425024	89425024	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
1358363	Sradr3	Stress Responsive Adrenal Weight QTL 3	6.19		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	58817672	103817672	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	26234499	134199155	Rat
1549839	Bw52	Body weight QTL 52		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	71647492	116647492	Rat
61336	Bp21	Blood pressure QTL 21	4.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	58080146	80212111	Rat
6909128	Pancm4	Pancreatic morphology QTL 4	11.35		pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	4	27862204	126119996	Rat
61475	Aia2	Adjuvant induced arthritis QTL 2	5.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	40471453	75939996	Rat
8694439	Bw168	Body weight QTL 168	9.57	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	41400603	86400603	Rat
1641919	Alc22	Alcohol consumption QTL 22		0.0005	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	65060960	127749483	Rat
8655906	Rf60	Renal function QTL 60	3.8		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	4	30448961	82336920	Rat
2317577	Eae24	Experimental allergic encephalomyelitis QTL 24			nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	4	67960112	73752811	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	45429897	149763204	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	51085655	113588029	Rat
2317588	Eae27	Experimental allergic encephalomyelitis QTL 27			nervous system integrity trait (VT:0010566)	percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)	4	69036742	114036742	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	40490442	117737312	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	57613339	151163960	Rat
4889969	Bss96	Bone structure and strength QTL 96	4.9		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	4	57613242	102613242	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
4889972	Bss97	Bone structure and strength QTL 97	5.6		tibia size trait (VT:0100001)	tibia total bone volume (CMO:0001724)	4	57613242	102613242	Rat
6478684	Anxrr30	Anxiety related response QTL 30		0.00087	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
5685012	Bmd87	Bone mineral density QTL 87	5.1		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	4	35113290	80113290	Rat
5685009	Bmd86	Bone mineral density QTL 86	3.7		tibia mineral mass (VT:1000283)	bone mineral density (CMO:0001226)	4	57613242	102613242	Rat
1331807	Rf31	Renal function QTL 31	2.988		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	4	40490442	75726188	Rat
634311	Sach7	Saccharin preference QTL 7			taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	58079875	82597589	Rat
2306547	Iddm38	Insulin dependent diabetes mellitus QTL 38			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	68353567	113353567	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	11706604	92690519	Rat
6478772	Anxrr49	Anxiety related response QTL 49		0.15488	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
2312569	Pur19	Proteinuria QTL 19	3.4	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	4	59836842	104836842	Rat
8655961	Kidm43	Kidney mass QTL 43	18		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	37269577	82269577	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	45429897	149763204	Rat
634344	Hcar7	Hepatocarcinoma resistance QTL 7	7.8		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	4	61041057	94638356	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5889999	148002343	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
631651	Bp124	Blood pressure QTL 124	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	64209744	109209744	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	63245026	129846354	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1558651	Swd3	Spike wave discharge measurement QTL 3	4.62	0.000024	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	4	41400577	86400577	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	57664252	127749483	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	65495851	159259805	Rat
631546	Bp86	Blood pressure QTL 86	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	58079875	92690793	Rat
6478743	Anxrr40	Anxiety related response QTL 40		0.83076	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
61434	Cia3	Collagen induced arthritis QTL 3	4.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	63224393	108224393	Rat
7394826	Bw126	Body weight QTL 126		0.002	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	63900458	88813920	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	33538597	116185060	Rat
631671	Iddm11	Insulin dependent diabetes mellitus QTL 11	3.6	0.0012	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	59603319	80216952	Rat

Markers in Region

RH142008

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	71,201,067 - 71,201,249 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	71,703,903 - 71,704,084	NCBI	Rnor6.0
Rnor_5.0	4	136,508,300 - 136,508,481	UniSTS	Rnor5.0
RGSC_v3.4	4	70,082,533 - 70,082,714	UniSTS	RGSC3.4
Celera	4	66,131,561 - 66,131,742	UniSTS
RH 3.4 Map	4	433.41	UniSTS
Cytogenetic Map	4	q23	UniSTS

AV277466

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	4	72,167,947 - 72,168,082 (+)	Marker Load Pipeline
mRatBN7.2	4	71,201,316 - 71,201,452 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	71,704,152 - 71,704,287	NCBI	Rnor6.0
Rnor_5.0	4	136,508,549 - 136,508,684	UniSTS	Rnor5.0
RGSC_v3.4	4	70,082,782 - 70,082,917	UniSTS	RGSC3.4
Celera	4	66,131,810 - 66,131,945	UniSTS
Cytogenetic Map	4	q23	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	151	62	61	30	83	30	6	302	181	9	130	67	92	31	15	15

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC121165	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC092642	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000059447 ⟹ ENSRNOP00000056203

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	72,167,668 - 72,176,858 (-)	Ensembl
mRatBN7.2 Ensembl	4	71,201,038 - 71,210,228 (-)	Ensembl
Rnor_6.0 Ensembl	4	71,703,873 - 71,713,063 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100243 ⟹ ENSRNOP00000096432

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	72,167,668 - 72,174,269 (-)	Ensembl
mRatBN7.2 Ensembl	4	71,201,038 - 71,210,228 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000143129 ⟹ ENSRNOP00000110141

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	72,165,578 - 72,176,858 (-)	Ensembl

RefSeq Acc Id:

NM_001025046 ⟹ NP_001020217

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	72,167,667 - 72,176,858 (-)	NCBI
mRatBN7.2	4	71,201,037 - 71,210,228 (-)	NCBI
Rnor_6.0	4	71,703,872 - 71,713,063 (-)	NCBI
Rnor_5.0	4	136,508,269 - 136,517,492 (-)	NCBI
RGSC_v3.4	4	70,082,502 - 70,091,693 (-)	RGD
Celera	4	66,131,530 - 66,140,721 (-)	RGD

Sequence:

show sequence

CGGAGACAGCCGCGGCGCTGCAGAGCGGCTGGGGCGGCGGCGCGGCTCCCGGTGCTCCCCCCGG
CGAGCGCCCGGAGTCGGTGAGGGCCGGCCCCCGGCGGCCCCCGGAGCCATGGGCTGCATCGGCT
CGAGGACTGTGGGGAATGAGGTGATTGCGGTGGACTGGAAAGGCCTCAAGGATGTCGATCAGAT
CAACATGGACAGCACCAGCTCACTGCATGGCAGCAGTCTGCATCGGCCTTCTACAGAGCAAACA
CGAACAGATTTCTCCTGGGACGGCATCAATCTCTCCATGGAGGACACCACTTCCATCCTCCCGA
AGCTTAAGCGAAACTCTAATGCCTATGGCATTGGGGCCCTGGCCAAGTCATCATTCTCAGGGAT
CTCAAGGAGCATGAAGGACCATGTGACAAAGCCTACAGCCATGGGCCAAGGTCGGGTGGCCCAC
ATGATTGAGTGGCAGGGCTGGGGGAAGGCCCCAGCAATTCAGCCACAACACAGCCATGAGGCTG
TGCGCAGGGATACAGATGCTTACTCTGACCTCAGCGATGGTGAGAAGGAGGCACGTTTCTTAGC
AGGTGTCATGGAACAGTTTGCTATCTCTGAGGCTACCCTTATGGCCTGGTCTTCCATGGATGGC
GAGGACATGAGTGTCAATTCTACCCAGGAGCCACTGGACTGCAATTACAGTGACAACTACCAGG
AGCTGATGGAAAGTCAGGATGCACTAGCTCAAGCCCCCATGGATGGATGGCCTCACTCCTACGT
GTCACAGGGGATGTACTGTCTGGGGTCATCTGACGCCTGGGAAGCAAGCGATCAGTCCCTCATT
GCATCTCCAGCTACAGGATCCTATCTTGGCCCTGCATTTGATGACTCACAGCCCAGCCTGCATG
ACATGGGGCCTTCCCAACCTGCTTCAGGATACTCTGCTCAGGAGCCTCCACCTTTATTGGGGGT
AGACACTGACTGGGCATCAGAAGTTGGTGGGGTGGAACTGGCTAGGGGACCTGTAGAGGAAGAG
AAGAGACCACTGGCTCCTGAGGAGGAAGAAGATGCAGGATGTCGGGATCTGGAGTCACTTTCCC
CACGAGAGGACCCAGAGATGTCCACTGCTCTCAGCCGGAAGGTGTCTGATGTCACATCCTCAGG
TGTGCAGTCCTTTGATGAGGAGGAGGGGGATGCCAACAACTAGCTTCTTCCCACCCCACTCTGA
CCTGAGGGGCATGGCTGCAACCCATACCCCCGCAAGCTCCAGCAGCACAGATGAAACCCAGGCA
GAAGACAGCAGGGAACTGGGAGCTTTCAGCCCTCCCCAGGCCGCTAGCCACCCTGGAAAGTGAA
GGATCAGCAGGGGGTTTTATCTGGGCTTGCACTTCAGAAACCATCATTCCAAGAACTGAGACCC
AGGCAATTAGGTGGCATGGTGGTGGGAGATGAGCCATGGCTATGGCTCTTGGGTCCATGCCCAG
GTCTGTCGCGCCGAACACTGAATCTCAGTTTTTACACCCCCGATTTCGTCTTCCAGGAGCCTTG
GCTGTGCTGTCTGAATGCCTCTTTTCTCCATTTCACTCTTGCTTTCCTGATTCTGATTTCTCTG
CCCATGGCACCAGTGCATCCCCACTGTGGGAAGCAGGCCTCAGGGGCTGTTGGACATGGCTTGG
CAGGTATAGCAGAGTACCTGCCTGAAGCAGTGGTCTGAAGGGCCCTTCTGTGTTTGGCATAGGC
AGTGGGCCCAGCTCAGGCAATCTTTGGCTTTTGCAATCAGGAGCCAAGGGTGAGGTGGACATGG
CAGCTGGGATTGACAGGGGTCACAGTATGATTCTTTATCAAGGCCTACTCAGAGACAAGAGGGT
CACCAATGAGACAAAGAATAAACACAGCCACTTGAATGTCTTATGGCTGGAAGGGGGACCTTAA
GCCCACTGGGGTTGGTCCAGTTCTGGCTTCTCTTTCTGCCTTCTTCCATCTGGCACCCAGCCCC
AAGGAGGGGAAGCGTCTCAAATTGTTGACCTAGGATGCAGTGTCCCCATCAGTGGGGAACCATG
AGGGCCGGGCCTCCCTCTACCTTCCCAAATTCTCTGGAGCTGTTTACACTTTTATCTTTGCCTT
TTCTACATTTTTATAACTTCTTGGGGACTCAGGGTTGAGCAGAGTGGAATGGGGAGCCTGGTGC
TGTCACTGCCTTGGCTGGGCTGGGTGGCTGGCTGAGGGCCAGGGTGGACACGGGCTGCTTCTGC
TTTTTGTCAGCTGTTCCCAGGGGTCCTCAATCCAGTGTTCCTTATAGGAGTAGCTGTGGTGAGA
CATACTCTTGCCTGCCCCTACCTCCTTTTCCCTTTGATTTGGAGTGGGCCATGGGGGCAGGAAG
CAACAGCAAGTCAGTGCAGTATTGTTGTGAGGGTGCTGCAACAGCCACAGGTCCAATCTGGTCC
TTGGCATAAGCAGAGTTTTGATAGGAGATGCCCAAGCTTGTCAGCGTGTTTTTCTCCTTCCTCC
TGTCTATCCATAGCTCCAGTCCCAAGGCCTTGTGTCCTACTATAATGTCAGGGGTTCTAAATTA
CTCCCCTACCCATCAAAATGATGAGGCTCACTGTTGGAGTGATTCTGTTCATCTGTGATGCTGT
CCTGTACCACATTCTTACACTGAAGTGTAACCAGAGTAGGTGTCCCACATCCTTCAGGGGAGGG
GGAAGCATGGGATCTTAAGGTCTCTTAATGTAGGAAACATGGGAACAAACCAGGAGAGCCACAG
TAGGTGAACAGTCACTTAGCTTATCTAATGCTGCCTGAATGGGAGGAGAAGATACCTCGTGTTT
GCTAGTGTGTTGTGGTTTAGCTTACAAGGACCTCATTTCTAGGACTAGGAAGGGCTAACCTGCC
AACCCTGGTAACTGCCCCTAACCCCTGGCCTCCTGTCCTAGCCCCCTGGGAATCTGCATGTTGA
AGCTAACCTATTCCCAGGGTCTCTTTGCCTTGTCTATCCTGCTCTATCAACACGTTTGTCTCAT
CTCAGTGTCCCCGTATTCTTCCCCAGGTGACCGTGGACAGCAAGTCCAGTGAGCAGGTGTATTC
ATCTTGGTTCCCTTTGCTCAGGGCCCTGGAGAGTTAGGAAGAGTAAACTAAAGCAGCTTTCTTT
CCCCCTTCCATTCCTCAAGGAAGCTAAATGGTCCCCAATGAAAGACTACAAAAGACTTGAAGAA
ACCTAGTAGGGTTTGTACCTGAGCAGGGGCTTGGTGTCCCCAGGCTGCGGCATACTGCCACAGA
GGCTCACCCCACTCTGAAAAGAGAAGACTCAAGGAGCTGGCCCAGGACCATTTTGAACTCTTTT
AGAGGGAGGGACCACCTCTTTGGTGCTGGGGCAGGGTGCATGGGGGTTTGCTTCTAGCCTACTT
TAGGGGAGGGGTGGGGCATGTGCAGGAAAAGGGTGTTAGGGGTGGGTGGGAAGGGTTGCTTTTC
CTTTGGGGTTAAAGGCTGTGCAGCACGTTTTACAGCAGCCGGGGAGCAGGGCTGTTTTTTATAT
TCTTGTGAATGAAACTGCTCTTGCTGAATGATTTTTTTTAAGGGGGGGTACACCTTCATTTTCA
ATTGACTTTATTAAATGAAAATCCAAACCTTCCATTCCTTCCCTCCCATTGCCTCCCCCAGCCC
ACACACCTTCTTTCTTTCCCTTGTGTTAAGAAGGGAATCTTGAAGGACGAGTTCTTAGCCTTGT
TCATATAGATCCCACACTCTGTTTTCCAGGTCTGAGAAATACCCATTTTTATGGTCAGTCTTAG
CATGTTTTCTTAATGTGAAACTCTCACCCCAGGCCCAGGAAGGATTCTATGACATATATGACAG
AGAGAATTCTATATAAATATATATAAGTATTATAGATTATATACACATGGGCATGGGCTTGGAT
GCCCCCTGCTAGTCCTCCTACCTAGGCCTCAATGTCTTAGCCTGGGGTGGTGGAAGGAACCCAT
GTTGGAGAAGGGCAGAGACTGTGTTGAACAACACTAAACAGAATGTGGTGGCAAAAAAAAAAAA
AAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017592788 ⟹ XP_017448277

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	72,167,667 - 72,176,924 (-)	NCBI
mRatBN7.2	4	71,201,037 - 71,210,292 (-)	NCBI
Rnor_6.0	4	71,703,872 - 71,713,268 (-)	NCBI

Sequence:

show sequence

AGCTCGGCGAGGGGCGCGGGGAGCGCGGCGCCCGGTCGGGGGCAGGGCGGGGAGGCTCCGCGCG
CAGCCAATCCCCGAGCATCCCCCTCCCCGGCCGCCGAGAGCTGAGCGGGGCGGGGGAGCCAGGC
GGTGGCGGCGGCGGCAGCGGCGGCGACGGAGGCTGCCGTGGGGAGGGATGGAGAGGGGAGGGGG
GAGCGGAACCGAGCGGAGACAGCCGCGGCGCTGCAGAGCGGCTGGGGCGGCGGCGCGGCTCCCG
GTGCTCCCCCCGGCGAGCGCCCGGAGTCGGTGAGGGCCGGCCCCCGGCGGCCCCCGGAGCCATG
GGCTGCATCGGCTCGAGGACTGTGGGGAATGAGGTGATTGCGGTGGACTGGAAAGGCCTCAAGG
ATGTCGATCAGATCAACATGGACAGCACCAGCTCACTGCATGGCAGCAGTCTGCATCGGCCTTC
TACAGAGCTCTCCATGGAGGACACCACTTCCATCCTCCCGAAGCTTAAGCGAAACTCTAATGCC
TATGGCATTGGGGCCCTGGCCAAGTCATCATTCTCAGGGATCTCAAGGAGCATGAAGGACCATG
TGACAAAGCCTACAGCCATGGGCCAAGGTCGGGTGGCCCACATGATTGAGTGGCAGGGCTGGGG
GAAGGCCCCAGCAATTCAGCCACAACACAGCCATGAGGCTGTGCGCAGGGATACAGATGCTTAC
TCTGACCTCAGCGATGGTGAGAAGGAGGCACGTTTCTTAGCAGGTGTCATGGAACAGTTTGCTA
TCTCTGAGGCTACCCTTATGGCCTGGTCTTCCATGGATGGCGAGGACATGAGTGTCAATTCTAC
CCAGGAGCCACTGGACTGCAATTACAGTGACAACTACCAGGAGCTGATGGAAAGTCAGGATGCA
CTAGCTCAAGCCCCCATGGATGGATGGCCTCACTCCTACGTGTCACAGGGGATGTACTGTCTGG
GGTCATCTGACGCCTGGGAAGCAAGCGATCAGTCCCTCATTGCATCTCCAGCTACAGGATCCTA
TCTTGGCCCTGCATTTGATGACTCACAGCCCAGCCTGCATGACATGGGGCCTTCCCAACCTGCT
TCAGGATACTCTGCTCAGGAGCCTCCACCTTTATTGGGGGTAGACACTGACTGGGCATCAGAAG
TTGGTGGGGTGGAACTGGCTAGGGGACCTGTAGAGGAAGAGAAGAGACCACTGGCTCCTGAGGA
GGAAGAAGATGCAGGATGTCGGGATCTGGAGTCACTTTCCCCACGAGAGGACCCAGAGATGTCC
ACTGCTCTCAGCCGGAAGGTGTCTGATGTCACATCCTCAGGTGTGCAGTCCTTTGATGAGGAGG
AGGGGGATGCCAACAACTAGCTTCTTCCCACCCCACTCTGACCTGAGGGGCATGGCTGCAACCC
ATACCCCCGCAAGCTCCAGCAGCACAGATGAAACCCAGGCAGAAGACAGCAGGGAACTGGGAGC
TTTCAGCCCTCCCCAGGCCGCTAGCCACCCTGGAAAGTGAAGGATCAGCAGGGGGTTTTATCTG
GGCTTGCACTTCAGAAACCATCATTCCAAGAACTGAGACCCAGGCAATTAGGTGGCATGGTGGT
GGGAGATGAGCCATGGCTATGGCTCTTGGGTCCATGCCCAGGTCTGTCGCGCCGAACACTGAAT
CTCAGTTTTTACACCCCCGATTTCGTCTTCCAGGAGCCTTGGCTGTGCTGTCTGAATGCCTCTT
TTCTCCATTTCACTCTTGCTTTCCTGATTCTGATTTCTCTGCCCATGGCACCAGTGCATCCCCA
CTGTGGGAAGCAGGCCTCAGGGGCTGTTGGACATGGCTTGGCAGGTATAGCAGAGTACCTGCCT
GAAGCAGTGGTCTGAAGGGCCCTTCTGTGTTTGGCATAGGCAGTGGGCCCAGCTCAGGCAATCT
TTGGCTTTTGCAATCAGGAGCCAAGGGTGAGGTGGACATGGCAGCTGGGATTGACAGGGGTCAC
AGTATGATTCTTTATCAAGGCCTACTCAGAGACAAGAGGGTCACCAATGAGACAAAGAATAAAC
ACAGCCACTTGAATGTCTTATGGCTGGAAGGGGGACCTTAAGCCCACTGGGGTTGGTCCAGTTC
TGGCTTCTCTTTCTGCCTTCTTCCATCTGGCACCCAGCCCCAAGGAGGGGAAGCGTCTCAAATT
GTTGACCTAGGATGCAGTGTCCCCATCAGTGGGGAACCATGAGGGCCGGGCCTCCCTCTACCTT
CCCAAATTCTCTGGAGCTGTTTACACTTTTATCTTTGCCTTTTCTACATTTTTATAACTTCTTG
GGGACTCAGGGTTGAGCAGAGTGGAATGGGGAGCCTGGTGCTGTCACTGCCTTGGCTGGGCTGG
GTGGCTGGCTGAGGGCCAGGGTGGACACGGGCTGCTTCTGCTTTTTGTCAGCTGTTCCCAGGGG
TCCTCAATCCAGTGTTCCTTATAGGAGTAGCTGTGGTGAGACATACTCTTGCCTGCCCCTACCT
CCTTTTCCCTTTGATTTGGAGTGGGCCATGGGGGCAGGAAGCAACAGCAAGTCAGTGCAGTATT
GTTGTGAGGGTGCTGCAACAGCCACAGGTCCAATCTGGTCCTTGGCATAAGCAGAGTTTTGATA
GGAGATGCCCAAGCTTGTCAGCGTGTTTTTCTCCTTCCTCCTGTCTATCCATAGCTCCAGTCCC
AAGGCCTTGTGTCCTACTATAATGTCAGGGGTTCTAAATTACTCCCCTACCCATCAAAATGATG
AGGCTCACTGTTGGAGTGATTCTGTTCATCTGTGATGCTGTCCTGTACCACATTCTTACACTGA
AGTGTAACCAGAGTAGGTGTCCCACATCCTTCAGGGGAGGGGGAAGCATGGGATCTTAAGGTCT
CTTAATGTAGGAAACATGGGAACAAACCAGGAGAGCCACAGTAGGTGAACAGTCACTTAGCTTA
TCTAATGCTGCCTGAATGGGAGGAGAAGATACCTCGTGTTTGCTAGTGTGTTGTGGTTTAGCTT
ACAAGGACCTCATTTCTAGGACTAGGAAGGGCTAACCTGCCAACCCTGGTAACTGCCCCTAACC
CCTGGCCTCCTGTCCTAGCCCCCTGGGAATCTGCATGTTGAAGCTAACCTATTCCCAGGGTCTC
TTTGCCTTGTCTATCCTGCTCTATCAACACGTTTGTCTCATCTCAGTGTCCCCGTATTCTTCCC
CAGGTGACCGTGGACAGCAAGTCCAGTGAGCAGGTGTATTCATCTTGGTTCCCTTTGCTCAGGG
CCCTGGAGAGTTAGGAAGAGTAAACTAAAGCAGCTTTCTTTCCCCCTTCCATTCCTCAAGGAAG
CTAAATGGTCCCCAATGAAAGACTACAAAAGACTTGAAGAAACCTAGTAGGGTTTGTACCTGAG
CAGGGGCTTGGTGTCCCCAGGCTGCGGCATACTGCCACAGAGGCTCACCCCACTCTGAAAAGAG
AAGACTCAAGGAGCTGGCCCAGGACCATTTTGAACTCTTTTAGAGGGAGGGACCACCTCTTTGG
TGCTGGGGCAGGGTGCATGGGGGTTTGCTTCTAGCCTACTTTAGGGGAGGGGTGGGGCATGTGC
AGGAAAAGGGTGTTAGGGGTGGGTGGGAAGGGTTGCTTTTCCTTTGGGGTTAAAGGCTGTGCAG
CACGTTTTACAGCAGCCGGGGAGCAGGGCTGTTTTTTATATTCTTGTGAATGAAACTGCTCTTG
CTGAATGATTTTTTTTAAGGGGGGGTACACCTTCATTTTCAATTGACTTTATTAAATGAAAATC
CAAACCTTCCATTCCTTCCCTCCCATTGCCTCCCCCAGCCCACACACCTTCTTTCTTTCCCTTG
TGTTAAGAAGGGAATCTTGAAGGACGAGTTCTTAGCCTTGTTCATATAGATCCCACACTCTGTT
TTCCAGGTCTGAGAAATACCCATTTTTATGGTCAGTCTTAGCATGTTTTCTTAATGTGAAACTC
TCACCCCAGGCCCAGGAAGGATTCTATGACATATATGACAGAGAGAATTCTATATAAATATATA
TAAGTATTATAGATTATATACACATGGGCATGGGCTTGGATGCCCCCTGCTAGTCCTCCTACCT
AGGCCTCAATGTCTTAGCCTGGGGTGGTGGAAGGAACCCATGTTGGAGAAGGGCAGAGACTGTG
TTGAACAACACTAAACAGAATGTGGTGGCA

hide sequence

RefSeq Acc Id:

XM_063286506 ⟹ XP_063142576

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	72,167,667 - 72,174,256 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001020217	(Get FASTA)	NCBI Sequence Viewer
	XP_017448277	(Get FASTA)	NCBI Sequence Viewer
	XP_063142576	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH92642	(Get FASTA)	NCBI Sequence Viewer
	EDM15509	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000056203
	ENSRNOP00000096432
GenBank Protein	Q568Z1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001020217 ⟸ NM_001025046

- UniProtKB:

Q568Z1 (UniProtKB/Swiss-Prot), F8WFH6 (UniProtKB/TrEMBL), A6IF72 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGCIGSRTVGNEVIAVDWKGLKDVDQINMDSTSSLHGSSLHRPSTEQTRTDFSWDGINLSMEDT
TSILPKLKRNSNAYGIGALAKSSFSGISRSMKDHVTKPTAMGQGRVAHMIEWQGWGKAPAIQPQ
HSHEAVRRDTDAYSDLSDGEKEARFLAGVMEQFAISEATLMAWSSMDGEDMSVNSTQEPLDCNY
SDNYQELMESQDALAQAPMDGWPHSYVSQGMYCLGSSDAWEASDQSLIASPATGSYLGPAFDDS
QPSLHDMGPSQPASGYSAQEPPPLLGVDTDWASEVGGVELARGPVEEEKRPLAPEEEEDAGCRD
LESLSPREDPEMSTALSRKVSDVTSSGVQSFDEEEGDANN

hide sequence

RefSeq Acc Id:	XP_017448277 ⟸ XM_017592788
- Peptide Label:	isoform X1
- UniProtKB:	Q568Z1 (UniProtKB/Swiss-Prot), A0A8I6AQS3 (UniProtKB/TrEMBL), A6IF72 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGCIGSRTVGNEVIAVDWKGLKDVDQINMDSTSSLHGSSLHRPSTELSMEDTTSILPKLKRNSN AYGIGALAKSSFSGISRSMKDHVTKPTAMGQGRVAHMIEWQGWGKAPAIQPQHSHEAVRRDTDA YSDLSDGEKEARFLAGVMEQFAISEATLMAWSSMDGEDMSVNSTQEPLDCNYSDNYQELMESQD ALAQAPMDGWPHSYVSQGMYCLGSSDAWEASDQSLIASPATGSYLGPAFDDSQPSLHDMGPSQP ASGYSAQEPPPLLGVDTDWASEVGGVELARGPVEEEKRPLAPEEEEDAGCRDLESLSPREDPEM STALSRKVSDVTSSGVQSFDEEEGDANN hide sequence

Ensembl Acc Id:

ENSRNOP00000056203 ⟸ ENSRNOT00000059447

Ensembl Acc Id:

ENSRNOP00000096432 ⟸ ENSRNOT00000100243

RefSeq Acc Id:	XP_063142576 ⟸ XM_063286506
- Peptide Label:	isoform X2
- UniProtKB:	Q568Z1 (UniProtKB/Swiss-Prot), A6IF72 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000110141 ⟸ ENSRNOT00000143129

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q568Z1-F1-model_v2	AlphaFold	Q568Z1	1-332	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693011

Promoter ID:

EPDNEW_R3533

Type:

initiation region

Name:

Fam131b_1

Description:

family with sequence similarity 131, member B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	71,713,062 - 71,713,122	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560653	AgrOrtholog
BioCyc Gene	G2FUF-45090	BioCyc
Ensembl Genes	ENSRNOG00000017149	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000059447	ENTREZGENE
	ENSRNOT00000100243	ENTREZGENE
IMAGE_CLONE	IMAGE:7318030	IMAGE-MGC_LOAD
InterPro	FAM131	UniProtKB/Swiss-Prot
KEGG Report	rno:500102	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:109395	IMAGE-MGC_LOAD
NCBI Gene	500102	ENTREZGENE
PANTHER	PROTEIN FAM131B	UniProtKB/Swiss-Prot
	PTHR15736	UniProtKB/Swiss-Prot
Pfam	FAM131	UniProtKB/Swiss-Prot
PhenoGen	Fam131b	PhenoGen
RatGTEx	ENSRNOG00000017149	RatGTEx
UniProt	A0A8I6AQS3	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LZX6_RAT	UniProtKB/TrEMBL
	A6IF72	ENTREZGENE, UniProtKB/TrEMBL
	F131B_RAT	UniProtKB/Swiss-Prot
	F8WFH6	ENTREZGENE, UniProtKB/TrEMBL
	Q568Z1	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-05	Fam131b	family with sequence similarity 131, member B	LOC500102	hypothetical protein LOC500102	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC500102	hypothetical protein LOC500102			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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