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Gene: Cfap43 (cilia and flagella associated protein 43) Rattus norvegicus

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Symbol:

Cfap43

Name:

cilia and flagella associated protein 43

RGD ID:

1560545

Description:

Predicted to be involved in regulation of cilium beat frequency and sperm axoneme assembly. Predicted to act upstream of or within several processes, including epithelial cilium movement involved in extracellular fluid movement; flagellated sperm motility; and motile cilium assembly. Predicted to be located in 9+2 motile cilium. Predicted to be active in axoneme. Human ortholog(s) of this gene implicated in normal pressure hydrocephalus and spermatogenic failure 19. Orthologous to human CFAP43 (cilia and flagella associated protein 43); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cilia- and flagella-associated protein 43; hypothetical protein LOC690101; LOC365476; LOC690101; similar to chromosome 10 open reading frame 79; WD repeat domain 96; Wdr96

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	256,566,558 - 256,653,816 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	256,566,559 - 256,653,840 (-)	Ensembl				GRCr8
mRatBN7.2	1	246,625,259 - 246,712,438 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	246,625,262 - 246,712,443 (-)	Ensembl				mRatBN7.2
Rnor_6.0	1	267,511,359 - 267,598,642 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	267,511,523 - 267,598,639 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	274,941,796 - 275,031,231 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	253,107,405 - 253,218,036 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	242,391,695 - 242,477,391 (-)	NCBI		Celera
Cytogenetic Map	1	q54	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Asthenozoospermia (ISO)

normal pressure hydrocephalus (ISO,ISS)

oligospermia (ISO)

prostate cancer (ISO)

spermatogenic failure 19 (ISO,ISS)

Teratozoospermia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-palmitoylglycerol (ISO)

4,4'-sulfonyldiphenol (ISO)

4-nitrophenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP,ISO)

amitrole (EXP)

aristolochic acid A (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

Cuprizon (EXP)

dibutyl phthalate (ISO)

glufosinate (ISO)

glycidol (EXP)

Licochalcone B (ISO)

lipopolysaccharide (ISO)

methoxychlor (EXP)

N,N-diethyl-m-toluamide (EXP)

N-Nitrosopyrrolidine (ISO)

nicotine (ISO)

ozone (ISO)

paracetamol (EXP)

perfluorohexanesulfonic acid (ISO)

permethrin (EXP)

propanal (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

tetraphene (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triptonide (ISO)

urethane (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

brain development (ISO)

cell morphogenesis (ISO)

cerebrospinal fluid circulation (ISO)

cilium movement (IEA)

cilium organization (ISO)

flagellated sperm motility (IEA,ISO)

motile cilium assembly (ISO)

mucociliary clearance (ISO)

nucleus organization (ISO)

regulation of cilium beat frequency (IEA,ISO)

sperm axoneme assembly (IBA,IEA,ISO)

spermatogenesis (ISO)

Cellular Component

9+2 motile cilium (IEA,ISO)

axoneme (IBA,IEA,ISO)

extracellular region (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:28552195	PMID:29449551

Genomics

Comparative Map Data

Cfap43
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	256,566,558 - 256,653,816 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	256,566,559 - 256,653,840 (-)	Ensembl				GRCr8
mRatBN7.2	1	246,625,259 - 246,712,438 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	246,625,262 - 246,712,443 (-)	Ensembl				mRatBN7.2
Rnor_6.0	1	267,511,359 - 267,598,642 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	267,511,523 - 267,598,639 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	274,941,796 - 275,031,231 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	253,107,405 - 253,218,036 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	242,391,695 - 242,477,391 (-)	NCBI		Celera
Cytogenetic Map	1	q54	NCBI

CFAP43
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	104,129,888 - 104,232,364 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	104,129,888 - 104,232,364 (-)	Ensembl			hg38	GRCh38
GRCh37	10	105,889,646 - 105,992,122 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	105,879,636 - 105,982,110 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	10	105,879,635 - 105,982,110	NCBI
Celera	10	99,630,515 - 99,732,956 (-)	NCBI		Celera
Cytogenetic Map	10	q25.1	NCBI
HuRef	10	99,521,427 - 99,623,859 (-)	NCBI		HuRef
CHM1_1	10	106,173,536 - 106,276,006 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	105,017,999 - 105,120,456 (-)	NCBI		T2T-CHM13v2.0

Cfap43
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	47,723,706 - 47,825,893 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	47,725,296 - 47,907,726 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	19	47,736,857 - 47,837,454 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	47,736,857 - 47,919,287 (-)	Ensembl			mm10	GRCm38
MGSCv37	19	47,811,347 - 47,915,279 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	19	47,811,347 - 47,915,279 (-)	NCBI		MGSCv36	mm8
Celera	19	48,573,651 - 48,597,102 (-)	NCBI		Celera
Cytogenetic Map	19	D1	NCBI
cM Map	19	40.41	NCBI

Cfap43
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955485	6,451,004 - 6,515,532 (+)	Ensembl
ChiLan1.0	NW_004955485	6,418,063 - 6,515,730 (+)	NCBI	ChiLan1.0	ChiLan1.0

CFAP43
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	116,016,462 - 116,118,530 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	116,021,794 - 116,123,945 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	100,729,982 - 100,831,694 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	104,188,409 - 104,290,687 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	104,188,653 - 104,290,557 (-)	Ensembl			panPan2	panpan1.1

CFAP43
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	16,443,417 - 16,555,027 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	16,443,389 - 16,555,792 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	16,616,036 - 16,727,568 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	16,921,627 - 17,033,264 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	16,921,599 - 17,033,465 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	16,469,712 - 16,581,193 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	16,498,208 - 16,609,787 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	16,636,948 - 16,748,476 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cfap43
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	30,351,535 - 30,439,061 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936600	1,954,987 - 2,042,834 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CFAP43
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	115,073,366 - 115,174,043 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	115,073,529 - 115,201,965 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	124,990,707 - 125,052,816 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CFAP43
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	97,179,767 - 97,283,267 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	97,179,647 - 97,283,225 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	58,296,562 - 58,403,759 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cfap43
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624831	3,231,854 - 3,336,184 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cfap43
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	47,264,857 - 47,353,455 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cfap43
739 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	36
Count of miRNA genes:	31
Interacting mature miRNAs:	34
Transcripts:	ENSRNOT00000031925
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	154961463	266453731	Rat
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	208479811	269633915	Rat
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	160111531	262090437	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	160573753	266453731	Rat
70211	Niddm24	Non-insulin dependent diabetes mellitus QTL 24	3.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	224633915	269633915	Rat
724552	Glom2	Glomerulus QTL 2	3.3	0.0001	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	1	232312773	270518180	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	186658830	266453731	Rat
61327	Eae7	Experimental allergic encephalomyelitis QTL 7	5.6		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	226175591	270518180	Rat
1578775	Iddm21	Insulin dependent diabetes mellitus QTL 21	4.13		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	245782829	270518180	Rat
1358916	Kidm22	Kidney mass QTL 22	3.32		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	212738576	257738576	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	205233991	267096252	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	218829748	263829748	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	186658830	266453731	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
631837	Niddm35	Non-insulin dependent diabetes mellitus QTL 35		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	248619887	269633915	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	176288899	270518180	Rat
631836	Stl31	Serum triglyceride level QTL 31	4.64	5e-06	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	247133834	270518180	Rat
2312564	Glom18	Glomerulus QTL 18	2.4	0.003	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	194786607	262083703	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	162548015	270518180	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	152919152	268496042	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	160111531	262090437	Rat
1300108	Rf8	Renal function QTL 8	3.75		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	1	237995023	269633915	Rat
734767	Niddm57	Non-insulin dependent diabetes mellitus QTL 57			body mass (VT:0001259)	body weight (CMO:0000012)	1	233480549	270108840	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
631215	Stl8	Serum triglyceride level QTL 8	9.27	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	1	234540191	270518180	Rat
7387289	Uae45	Urinary albumin excretion QTL 45	2.86	0.0021	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	233204160	270518180	Rat
631843	Bw116	Body weight QTL 116	4.1	0.016	abdominal adipose amount (VT:1000220)	abdominal fat pad weight (CMO:0000088)	1	233480549	270108840	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	207163993	269633915	Rat
1598839	Rf56	Renal function QTL 56			renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	255849111	270518180	Rat
1581544	Rf52	Renal function QTL 52		0.05	urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	1	241569529	269633915	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
724538	Kidm1	Kidney mass QTL 1	3.2		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	223134011	262090599	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	160111426	262090599	Rat
631536	Lnnr2	Liver neoplastic nodule remodeling QTL 2	2.9	0.0005	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	1	243953669	270518180	Rat
734769	Niddm58	Non-insulin dependent diabetes mellitus QTL 58			body mass (VT:0001259)	body weight (CMO:0000012)	1	225108840	270108840	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	185857683	270518180	Rat
2302040	Pia35	Pristane induced arthritis QTL 35	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	226175591	270518180	Rat
631669	Iddm9	Insulin dependent diabetes mellitus QTL 9	2.8	0.039	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	233349180	270518180	Rat
1598821	Rf55	Renal function QTL 55	6.3		renal blood flow trait (VT:2000006)	ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)	1	228174566	270518180	Rat
724533	Rf51	Renal function QTL 51	5.3	0.0002	kidney plasma flow trait (VT:0005524)	renal plasma flow (CMO:0001914)	1	228180370	266453608	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
8	7	39	158	59	58	27	47	27	6	223	116	10	137	66	92	31	12	12

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001432356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604907	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_345041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC096311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC099075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC092207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000031925 ⟹ ENSRNOP00000031090

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	256,566,559 - 256,653,840 (-)	Ensembl
mRatBN7.2 Ensembl	1	246,625,262 - 246,712,443 (-)	Ensembl
Rnor_6.0 Ensembl	1	267,511,523 - 267,598,639 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096906 ⟹ ENSRNOP00000097602

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	256,566,559 - 256,653,840 (-)	Ensembl
mRatBN7.2 Ensembl	1	246,625,262 - 246,712,443 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000131092 ⟹ ENSRNOP00000104447

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	256,566,559 - 256,653,719 (-)	Ensembl

RefSeq Acc Id:

XM_006231588 ⟹ XP_006231650

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	256,566,558 - 256,638,005 (-)	NCBI
mRatBN7.2	1	246,625,261 - 246,696,744 (-)	NCBI
Rnor_6.0	1	267,511,359 - 267,582,970 (-)	NCBI
Rnor_5.0	1	274,941,796 - 275,031,231 (-)	NCBI

Sequence:

show sequence

TCGCTTGCTTCAAGGCGGCTGTCTCGGGAGTGAGATCTCGTTTGATTATAGGACAGCTGGGAAC
GCAGGACCGTCCTGCTCGTTCTGAATCACCTGGGAAGCAAAGACCCCACATACATGGGTACTGT
GTGTGGATACTTGGGGAGATGGCGGCAGGGCGGCTGTGACCCTGATTTTGGACCAGCTGATGTT
GAGGGACTGGGAAGCAAGGAGAGGTGCAGGGTGGGAGCTGGCAAGTAGAGCCCCTGTTCCCCAA
CAGGAGCCAAGTGGCAGCGATGGAGATGTAAACCTTAGTGAGTGTGATTCTCCCGGCAGCCCCT
GGGAGCAAAGGGGGCGGGGCTAGTGAATGAGGAGAAACATCTGAGGGAGGAGAGAGAAGAGGGC
GGAAGAAGCCCACTGCTAACAGGAGGAGAAGAAAGAGCAGTCTGCATCTGAGCACAACCGAAAG
ATGATATATATCCTCTGCTTCACCCAACTATGCACTGCTGGACTCCGTCAAGCGACCTGTACGT
TGGGTGTGAGGAGGGTCATCTTCTGATGATTAACACGGAAACCTTGAAGGTGACTGTGCTCCAG
AAGCTGGAGGAGTTTCCAGTACTGGATGGAGCCCAGCTTATCAATCCACTCACGCTGGTGTACC
AAAAGGACGGCATACTCGCTTCTGGAATTGACGGTGTGATATACTCGTTCATCATCAAAGACAC
AAAGTACGAAGTGAAGCCCTTCCTTGAGTTTGATGGGCCAGTGGCACATTTGGCGTTCTCCCCT
AGTTACAAAATGTTGCTGATTCAAACAGACAAGGGGTCTGTTTATATCTACACGTTTGGCACGG
AGCCGGTTCTCGATAAACTCCTAGAGGCCTGTGACGGGAAAGTCCAGGCCATCAGCTTTATCAC
GCCTGGGAACAAATACTTCCTGACGCTCACGAGTTCGGGGGAAGTTTCTATTTTTTCGATAGAA
GATGGCACTTGTACGGGCAGGATTTTCCTGAGGACTCACGCAACAACTCTGGCGTGCTCTCCTT
CTTCCTCATCGGCTGCCATGGGGACAGTGGATGGCTCTGTGTACTTCCTGAACATCCTTGACGT
GGAGTCCCCTCAGCTGATTCACCAGGCCTTCCTCTCCAAGTCGCCTGTGAAGATACTGATTTAC
GACCAGCGAGGAATCTTTCTGTTAGTCGGTACAGAAGAGGGAAAAATCTTTGTCATCGATGCCA
GACCCTCAAAGTCATTCCAGATTTTTGGATACACTGAGTCAAGCAAGGACATGCTGCAGATATC
CACGGTGTCACATGTGGAATCGGACGTGGTCGAAGTGCTGGTGTTGTCCCCGCTTTCAGAAACG
GGCAGAAGCAGGCTGGAGTACTTCACCCTGCCTATCATGTTACCACAAGTGGTCCCTGAAAACT
TCGCTGATGAAAGAGGACGGCTGAAGGACAACTTCACCCACAGGTACCTGTATGAGGTGGAGCA
CGCTCTGTCCTCTGCCGTGCTGGGCTTCTCAGAATCCAAAATCTATGGCTTCTGCAGCCAGGTG
CCGTACATCTGCAGCTATACAATGCCTGTAAAGGAGCACACCGGCATCTGTATCCTTAAGCCTC
AACAAAAAGTCCAGAGCAAACAGTATGGAGCCGGAACAATCTATCTGTCCTCTCACGGATTATG
GCTTATAACAATAGCTAAATGTGGAGTTCTCTGTATCCGAGATATGTTCAGTCTGGATACCTTT
GTTCGATGTCGGAGTCATTCTCACCATGGTCAAGGGATTCAGAACATGAAAATGTCAATGGACG
GACAGCACATCCTGGTGAATGGGAAAGACGACAACACCCTGGTCTACCTCAAGTGGAAGAGGCT
TGGATCAAACATAGCAAATGAGATCTTTGAACACTGCCATCAACTAATGCTCAGTCTGGCCAAG
ACCGTGGAAACAGAGTGTGACTACCTGGCTTCGCCAGATTACCAGTGTGTACCTCCAGAAGAAG
AGACAACTGAATTCCAGAAAAAGTTGAGCTTGTACTCATCCCAAGAGGAATTAGCCATCGATCT
CAATAAAATTCCCTGGATCCAACGAAAAATGGAAGAGGCCGTCAAAAAGGAGGTGAGGATTTTT
ACCCCTAGACGAAAGGAGATCAAACGAGGAATCAAGGAGCTCGCTCAAATTATTGCAGCTATGA
TGGAAGAAAATGAAAAGCTGGACACCATTGCAAAGCTGGATGAGCAGGAGTTTTGCCTGGATGC
TGAAGAGCTGGAAAGGCTTCACGATGAATGTGAGGAGGAGGTATCGAAGATTAGGAAAGATGTG
GAGATGCACAACTTAGCCAAGAGCTACTTAACTGAGCTTATCAAGGAAGAGTGCTGGAACTCAA
TGGCTGTGAAGGGCCGTGCTCTAAAGTGTTTTCATATACCCTATGTGGTTGACAACTTCCCCAT
GAAGGAGCGCACAGAAGAAGAACTGCTGGAGCTGAGTAAAGTTATACAGCAAAAGAAGACTGAG
ATAGAGTGTCTTAAGCTCCGGAAGGAAATCGTAGAGGCGCAGTCTGCAGCCACTATGGTTAAAA
AGCACCACGAAGAGGAGGAGGAGGAAGAGGAAGAGGATGAAGAAAAGGTAGTGAAAAGTACCAG
TTTGCCCAATTACCTACTTGGTAGTTTGAGCACTGATTTTGGGGCAGACACGTCTCTGTTGACA
AACCAATTGGAACTTCATTCCAGAGAGGAGAAAATCAACCAAATTATATTGCTAAAAGATATCA
TTTACAATATAAAAAAGACTTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAGAGATTGA
AATTGCACGCGTACAAGAAAAGAATGTTAGGATTGCAGAAATCATTTCAGACCTGGAATTGGAA
GAAAAAGTCTGGCAGCCAGTGTTTGAAGACAGCGAGAAGCCAGAAAGAGCCCTTGTTGTGGAAG
ATGACGAGATTTCACTTCAGAAATACTTTGCTCCTTGGCACAAAACCAAAGCAGAATTGCTCAC
AGCCTTTGATGCGGAGCGACTGCAACAAGCTCGGCTCTCTGATGCAAGGCACAGGGGCCTGATG
GACATGATGGGGGGCGTTCTGGAAGTCAAGAAAGAAGACATCCTAAGGATGGTGATCCCTCAGC
CTCCTTTCATGAGCAAACCTGATGCTCTGTGGAGCGAAGAGGAAAGGAAGCAATTCAAAGAGTA
CGAGAAGAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAATACAGAAAGTCTTTAGAAGCGGAA
CTGAAAAAACTTCAAAATGCTATTCAAGAGAACACACAGAACTTCGATGAGCATTTGAAGAGAC
TCTTTGAAAGGAGAGTGAAGGCAGAGATGGTCATCAACCAGGAGGAGCTGAAAATAAACAACAT
TGTGTTTTCTTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAACTACCTT
CAGAAGAAGCAGGATGAGAAAACCAAGACTTCAGAAGCCATCCAGAAAGCAAGAGAAGACCTGG
ACGTGTTCAAGGAGAACCATGACACCTTAGTGGCAGAAGACAAAGTTCTGGATCGCAGCTTCAA
AAAGGAATTTTCTGACATTTCTGGTCACCAGGTGGACGTACTCTACAAACTTTTTAAACGTCGG
CCAAGGGTTCCGAAACAGAAAACACAGACAGAGGTGAACACTCTTGTTCCTTATGGAGAGCGGC
CAGGATCTGGCAAGTTAAATAAGGAAACCTTTGCCCAGCTAATGAAGTCCATGGACGAGTTGGA
CAACGTCAGTAACATGCCAGAAGGCTTGGACCCCTCAGTCTGGGAACATTTCTGCGCGACTAGA
CGAGCAAAAGTGGAAAATGAGTACAAAGTGAAGCAGAAGGCGGCCTGCCTGTTGGAAATGACCA
CATTCCTCCGGAAGAGAATGGAAGATGACGATGTCGTACATCATGAGATTGAGAGGGTATTCCA
CGAGCTCGTCCGATTACAGGACGAGAAAGTAAAATTCCAGGTGAATTTGACAGTGCAGATTCTT
CTTAAACAAGGACAAGTGGAACTGGAGAATTTCCAGTTGACTCTGGAATATTCTGACGCGATTC
TCATCAATAAGAATATAATCGAAGAGTTGAATTCTGTGATTCGGACTCAAGGACAAAAGAAAGT
TGCTAGCATGATGGAAAGTAAAGAGGTCCACAAAGGGATCTATCAGATTGAGTGGGAGCACAAG
AAAATGGAGATGGAGATGGAGGACCTAAACCAGAAGGCCTGGGACATCCAGATGCTGTTCTTCT
CACGAGATCGGCAAAAGTACCTAAATGAACCCAACTACGAGGGCGTGATTGCTATTCAGATTGG
AATAATGGAGCAAACCATCAGTGTTATAGATAAGAATCACAAGAAGAATGTAGAAAACTGCAAA
AAACTACTCAAGAAGTTGGGAAAATGCAGCAATCAGAAAGATGTAGCAAATTATAACCTAAGCT
GTAATCTACGGGAGGAACTGGTGGCCGTCTCAGAGAGACAAGACATCTGTAATGAAATAGGGTC
TAAGCTGACCTGTGAGAAGATCGCCAGAGAACGCTATGACAACCTGATGAAACAGCAGAAGCTG
ACGAACATCTCCAAGCAGCAAGCTGAGCAGATTTCAATTCTGCAGGCGGAAGTCGAAAGACTGA
GGATGAAAACATTCCCTGCTCTCGTCCCAATGTAGAATACCAGCAGGAGCAGAAGGTAGACCAA
TGCTGACCTAACGTCCCTTGGATAGAAACTTCTTTCTCCCTTATCACAAAATTTAAGTAGGCCA
TCTCTCAGCCGCACGTTTTTAATAATGCAGTTTAGGTGGTTACTCAGTATAGTTACCTGTCCTC
CATGAATAAATGAGCAAAATATCACA

hide sequence

RefSeq Acc Id:

XM_008760497 ⟹ XP_008758719

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	256,566,558 - 256,653,816 (-)	NCBI
mRatBN7.2	1	246,625,261 - 246,712,436 (-)	NCBI
Rnor_6.0	1	267,511,359 - 267,598,642 (-)	NCBI

Sequence:

show sequence

ATACAGATGTAAACAGTGGAGTCTTCGCGGGCGTCTTAGCCCGACCCGGCAGGGCTACGGAGTA
ACGGCCGCAGCCCCGGGTGGGCTGAGTCGGCATGTCGCAAGGCCGGGAGCGCGACGAGGCCTCT
GCCACAGTCATACCCTCTGCCTCTGCCCATTACTCCGGAGCCTCCCTGTCGGTGAGATGGGTGC
AAGGATTCCCTAGTCAGAACGTTCATTTTGTCAATGACAACACCATCTGCTACCCTTCTGGGAA
CTATGTAATATTCATTAACTTGGAAACCAAGAAGAAGACTGTACTCCAGTGTATTAATGGGATC
GTGGGCGTCATGGCAACCAATGTCCCCGGTGAAGTCGTGGCTTTCTCTGACCGCAGACTTAAAC
CCATCATCTACATATACAGCTTTCCTTCACTGACCAGAAAAATCAAGTTAAAAGGCGACATCCT
CCTAGACTACAATCTGCTTTGCTTCAGTTACTGTGGCACCTACCTGGCCAGTTACTCGTCTCTC
CCAGAGTTTGAGCTGGCCCTCTGGAACTGGGAAGCCAATGTCATCTTGTGCAAGAAATCGAATC
CTGGAATGGATGTGAGTCAGATGACCTTCAACCCCATGAACTGGCGCCAAATGTGCTTGTCAAG
TCCAAGCGCCGTGAGCGTGTGGACCATTGAAAGAAGTAACCAGGAGCATCATTTCAGGATAAGG
CTGGTGAAGCTGCCTCAAGAAGATGGGACGCTCTCAAATGAAACCGACATGCTTTTCCCCACCT
CTCTGCCCAAGGATCTCATTTATGGACCCGTATTGCCCCTGTCGGCCATTGCCGGGCTGGTGGG
CGAAGAGGCAGAGACATTCAGGCCGAAAGATGATATATATCCTCTGCTTCACCCAACTATGCAC
TGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAGGAGGGTCATCTTCTGATGATTAACA
CGGAAACCTTGAAGGTGACTGTGCTCCAGAAGCTGGAGGAGTTTCCAGTACTGGATGGAGCCCA
GCTTATCAATCCACTCACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATTGACGGT
GTGATATACTCGTTCATCATCAAAGACACAAAGTACGAAGTGAAGCCCTTCCTTGAGTTTGATG
GGCCAGTGGCACATTTGGCGTTCTCCCCTAGTTACAAAATGTTGCTGATTCAAACAGACAAGGG
GTCTGTTTATATCTACACGTTTGGCACGGAGCCGGTTCTCGATAAACTCCTAGAGGCCTGTGAC
GGGAAAGTCCAGGCCATCAGCTTTATCACGCCTGGGAACAAATACTTCCTGACGCTCACGAGTT
CGGGGGAAGTTTCTATTTTTTCGATAGAAGATGGCACTTGTACGGGCAGGATTTTCCTGAGGAC
TCACGCAACAACTCTGGCGTGCTCTCCTTCTTCCTCATCGGCTGCCATGGGGACAGTGGATGGC
TCTGTGTACTTCCTGAACATCCTTGACGTGGAGTCCCCTCAGCTGATTCACCAGGCCTTCCTCT
CCAAGTCGCCTGTGAAGATACTGATTTACGACCAGCGAGGAATCTTTCTGTTAGTCGGTACAGA
AGAGGGAAAAATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTCCAGATTTTTGGATACACT
GAGTCAAGCAAGGACATGCTGCAGATATCCACGGTGTCACATGTGGAATCGGACGTGGTCGAAG
TGCTGGTGTTGTCCCCGCTTTCAGAAACGGGCAGAAGCAGGCTGGAGTACTTCACCCTGCCTAT
CATGTTACCACAAGTGGTCCCTGAAAACTTCGCTGATGAAAGAGGACGGCTGAAGGACAACTTC
ACCCACAGGTACCTGTATGAGGTGGAGCACGCTCTGTCCTCTGCCGTGCTGGGCTTCTCAGAAT
CCAAAATCTATGGCTTCTGCAGCCAGGTGCCGTACATCTGCAGCTATACAATGCCTGTAAAGGA
TACCTTTGTTCGATGTCGGAGTCATTCTCACCATGGTCAAGGGATTCAGAACATGAAAATGTCA
ATGGACGGACAGCACATCCTGGTGAATGGGAAAGACGACAACACCCTGGTCTACCTCAAGTGGA
AGAGGCTTGGATCAAACATAGCAAATGAGATCTTTGAACACTGCCATCAACTAATGCTCAGTCT
GGCCAAGACCGTGGAAACAGAGTGTGACTACCTGGCTTCGCCAGATTACCAGTGTGTACCTCCA
GAAGAAGAGACAACTGAATTCCAGAAAAAGTTGAGCTTGTACTCATCCCAAGAGGAATTAGCCA
TCGATCTCAATAAAATTCCCTGGATCCAACGAAAAATGGAAGAGGCCGTCAAAAAGGAGGTGAG
GATTTTTACCCCTAGACGAAAGGAGATCAAACGAGGAATCAAGGAGCTCGCTCAAATTATTGCA
GCTATGATGGAAGAAAATGAAAAGCTGGACACCATTGCAAAGCTGGATGAGCAGGAGTTTTGCC
TGGATGCTGAAGAGCTGGAAAGGCTTCACGATGAATGTGAGGAGGAGGTATCGAAGATTAGGAA
AGATGTGGAGATGCACAACTTAGCCAAGAGCTACTTAACTGAGCTTATCAAGGAAGAGTGCTGG
AACTCAATGGCTGTGAAGGGCCGTGCTCTAAAGTGTTTTCATATACCCTATGTGGTTGACAACT
TCCCCATGAAGGAGCGCACAGAAGAAGAACTGCTGGAGCTGAGTAAAGTTATACAGCAAAAGAA
GACTGAGATAGAGTGTCTTAAGCTCCGGAAGGAAATCGTAGAGGCGCAGTCTGCAGCCACTATG
GTTAAAAAGCACCACGAAGAGGAGGAGGAGGAAGAGGAAGAGGATGAAGAAAAGGTAGTGAAAA
GTACCAGTTTGCCCAATTACCTACTTGGTAGTTTGAGCACTGATTTTGGGGCAGACACGTCTCT
GTTGACAAACCAATTGGAACTTCATTCCAGAGAGGAGAAAATCAACCAAATTATATTGCTAAAA
GATATCATTTACAATATAAAAAAGACTTTCAATAGTGAATTTGATGCTGCCTATAAGCAAAAAG
AGATTGAAATTGCACGCGTACAAGAAAAGAATGTTAGGATTGCAGAAATCATTTCAGACCTGGA
ATTGGAAGAAAAAGTCTGGCAGCCAGTGTTTGAAGACAGCGAGAAGCCAGAAAGAGCCCTTGTT
GTGGAAGATGACGAGATTTCACTTCAGAAATACTTTGCTCCTTGGCACAAAACCAAAGCAGAAT
TGCTCACAGCCTTTGATGCGGAGCGACTGCAACAAGCTCGGCTCTCTGATGCAAGGCACAGGGG
CCTGATGGACATGATGGGGGGCGTTCTGGAAGTCAAGAAAGAAGACATCCTAAGGATGGTGATC
CCTCAGCCTCCTTTCATGAGCAAACCTGATGCTCTGTGGAGCGAAGAGGAAAGGAAGCAATTCA
AAGAGTACGAGAAGAAAGTCAAGGAGCTGAATGAAGAGAGAGACAAATACAGAAAGTCTTTAGA
AGCGGAACTGAAAAAACTTCAAAATGCTATTCAAGAGAACACACAGAACTTCGATGAGCATTTG
AAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAGATGGTCATCAACCAGGAGGAGCTGAAAATAA
ACAACATTGTGTTTTCTTTGCTGCTGGATGAAGAACTCAGCTCCAGGGAACAGTTCCTGAACAA
CTACCTTCAGAAGAAGCAGGATGAGAAAACCAAGACTTCAGAAGCCATCCAGAAAGCAAGAGAA
GACCTGGACGTGTTCAAGGAGAACCATGACACCTTAGTGGCAGAAGACAAAGTTCTGGATCGCA
GCTTCAAAAAGGAATTTTCTGACATTTCTGGTCACCAGGTGGACGTACTCTACAAACTTTTTAA
ACGTCGGCCAAGGGTTCCGAAACAGAAAACACAGACAGAGGTGAACACTCTTGTTCCTTATGGA
GAGCGGCCAGGATCTGGCAAGTTAAATAAGGAAACCTTTGCCCAGCTAATGAAGTCCATGGACG
AGTTGGACAACGTCAGTAACATGCCAGAAGGCTTGGACCCCTCAGTCTGGGAACATTTCTGCGC
GACTAGACGAGCAAAAGTGGAAAATGAGTACAAAGTGAAGCAGAAGGCGGCCTGCCTGTTGGAA
ATGACCACATTCCTCCGGAAGAGAATGGAAGATGACGATGTCGTACATCATGAGATTGAGAGGG
TATTCCACGAGCTCGTCCGATTACAGGACGAGAAAGTAAAATTCCAGGTGAATTTGACAGTGCA
GATTCTTCTTAAACAAGGACAAGTGGAACTGGAGAATTTCCAGTTGACTCTGGAATATTCTGAC
GCGATTCTCATCAATAAGAATATAATCGAAGAGTTGAATTCTGTGATTCGGACTCAAGGACAAA
AGAAAGTTGCTAGCATGATGGAAAGTAAAGAGGTCCACAAAGGGATCTATCAGATTGAGTGGGA
GCACAAGAAAATGGAGATGGAGATGGAGGACCTAAACCAGAAGGCCTGGGACATCCAGATGCTG
TTCTTCTCACGAGATCGGCAAAAGTACCTAAATGAACCCAACTACGAGGGCGTGATTGCTATTC
AGATTGGAATAATGGAGCAAACCATCAGTGTTATAGATAAGAATCACAAGAAGAATGTAGAAAA
CTGCAAAAAACTACTCAAGAAGTTGGGAAAATGCAGCAATCAGAAAGATGTAGCAAATTATAAC
CTAAGCTGTAATCTACGGGAGGAACTGGTGGCCGTCTCAGAGAGACAAGACATCTGTAATGAAA
TAGGGTCTAAGCTGACCTGTGAGAAGATCGCCAGAGAACGCTATGACAACCTGATGAAACAGCA
GAAGCTGACGAACATCTCCAAGCAGCAAGCTGAGCAGATTTCAATTCTGCAGGCGGAAGTCGAA
AGACTGAGGATGAAAACATTCCCTGCTCTCGTCCCAATGTAGAATACCAGCAGGAGCAGAAGGT
AGACCAATGCTGACCTAACGTCCCTTGGATAGAAACTTCTTTCTCCCTTATCACAAAATTTAAG
TAGGCCATCTCTCAGCCGCACGTTTTTAATAATGCAGTTTAGGTGGTTACTCAGTATAGTTACC
TGTCCTCCATGAATAAATGAGCAAAATATCACA

hide sequence

RefSeq Acc Id:

XM_039101433 ⟹ XP_038957361

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	256,566,558 - 256,653,702 (-)	NCBI
mRatBN7.2	1	246,625,261 - 246,712,400 (-)	NCBI

RefSeq Acc Id:

XM_039101434 ⟹ XP_038957362

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	256,566,558 - 256,653,684 (-)	NCBI
mRatBN7.2	1	246,625,261 - 246,712,302 (-)	NCBI

RefSeq Acc Id:

XM_345041 ⟹ XP_345042

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	256,566,558 - 256,653,816 (-)	NCBI
mRatBN7.2	1	246,625,259 - 246,712,435 (-)	NCBI
Rnor_6.0	1	267,511,359 - 267,598,642 (-)	NCBI
Rnor_5.0	1	274,941,796 - 275,031,231 (-)	NCBI
RGSC_v3.4	1	253,107,405 - 253,218,036 (-)	RGD

Sequence:

show sequence

ATACAGATGTAAACAGTGGAGTCTTCGCGGGCGTCTTAGCCCGACCCGGCAGGGCTACGGAGTA
ACGGCCGCAGCCCCGGGTGGGCTGAGTCGGCATGTCGCAAGGCCGGGAGCGCGACGAGGCCTCT
GCCACAGTCATACCCTCTGCCTCTGCCCATTACTCCGGAGCCTCCCTGTCGGTGAGATGGGTGC
AAGGATTCCCTAGTCAGAACGTTCATTTTGTCAATGACAACACCATCTGCTACCCTTCTGGGAA
CTATGTAATATTCATTAACTTGGAAACCAAGAAGAAGACTGTACTCCAGTGTATTAATGGGATC
GTGGGCGTCATGGCAACCAATGTCCCCGGTGAAGTCGTGGCTTTCTCTGACCGCAGACTTAAAC
CCATCATCTACATATACAGCTTTCCTTCACTGACCAGAAAAATCAAGTTAAAAGGCGACATCCT
CCTAGACTACAATCTGCTTTGCTTCAGTTACTGTGGCACCTACCTGGCCAGTTACTCGTCTCTC
CCAGAGTTTGAGCTGGCCCTCTGGAACTGGGAAGCCAATGTCATCTTGTGCAAGAAATCGAATC
CTGGAATGGATGTGAGTCAGATGACCTTCAACCCCATGAACTGGCGCCAAATGTGCTTGTCAAG
TCCAAGCGCCGTGAGCGTGTGGACCATTGAAAGAAGTAACCAGGAGCATCATTTCAGGATAAGG
CTGGTGAAGCTGCCTCAAGAAGATGGGACGCTCTCAAATGAAACCGACATGCTTTTCCCCACCT
CTCTGCCCAAGGATCTCATTTATGGACCCGTATTGCCCCTGTCGGCCATTGCCGGGCTGGTGGG
CGAAGAGGCAGAGACATTCAGGCCGAAAGATGATATATATCCTCTGCTTCACCCAACTATGCAC
TGCTGGACTCCGTCAAGCGACCTGTACGTTGGGTGTGAGGAGGGTCATCTTCTGATGATTAACA
CGGAAACCTTGAAGGTGACTGTGCTCCAGAAGCTGGAGGAGTTTCCAGTACTGGATGGAGCCCA
GCTTATCAATCCACTCACGCTGGTGTACCAAAAGGACGGCATACTCGCTTCTGGAATTGACGGT
GTGATATACTCGTTCATCATCAAAGACACAAAGTACGAAGTGAAGCCCTTCCTTGAGTTTGATG
GGCCAGTGGCACATTTGGCGTTCTCCCCTAGTTACAAAATGTTGCTGATTCAAACAGACAAGGG
GTCTGTTTATATCTACACGTTTGGCACGGAGCCGGTTCTCGATAAACTCCTAGAGGCCTGTGAC
GGGAAAGTCCAGGCCATCAGCTTTATCACGCCTGGGAACAAATACTTCCTGACGCTCACGAGTT
CGGGGGAAGTTTCTATTTTTTCGATAGAAGATGGCACTTGTACGGGCAGGATTTTCCTGAGGAC
TCACGCAACAACTCTGGCGTGCTCTCCTTCTTCCTCATCGGCTGCCATGGGGACAGTGGATGGC
TCTGTGTACTTCCTGAACATCCTTGACGTGGAGTCCCCTCAGCTGATTCACCAGGCCTTCCTCT
CCAAGTCGCCTGTGAAGATACTGATTTACGACCAGCGAGGAATCTTTCTGTTAGTCGGTACAGA
AGAGGGAAAAATCTTTGTCATCGATGCCAGACCCTCAAAGTCATTCCAGATTTTTGGATACACT
GAGTCAAGCAAGGACATGCTGCAGATATCCACGGTGTCACATGTGGAATCGGACGTGGTCGAAG
TGCTGGTGTTGTCCCCGCTTTCAGAAACGGGCAGAAGCAGGCTGGAGTACTTCACCCTGCCTAT
CATGTTACCACAAGTGGTCCCTGAAAACTTCGCTGATGAAAGAGGACGGCTGAAGGACAACTTC
ACCCACAGGTACCTGTATGAGGTGGAGCACGCTCTGTCCTCTGCCGTGCTGGGCTTCTCAGAAT
CCAAAATCTATGGCTTCTGCAGCCAGGTGCCGTACATCTGCAGCTATACAATGCCTGTAAAGGA
GCACACCGGCATCTGTATCCTTAAGCCTCAACAAAAAGTCCAGAGCAAACAGTATGGAGCCGGA
ACAATCTATCTGTCCTCTCACGGATTATGGCTTATAACAATAGCTAAATGTGGAGTTCTCTGTA
TCCGAGATATGTTCAGTCTGGATACCTTTGTTCGATGTCGGAGTCATTCTCACCATGGTCAAGG
GATTCAGAACATGAAAATGTCAATGGACGGACAGCACATCCTGGTGAATGGGAAAGACGACAAC
ACCCTGGTCTACCTCAAGTGGAAGAGGCTTGGATCAAACATAGCAAATGAGATCTTTGAACACT
GCCATCAACTAATGCTCAGTCTGGCCAAGACCGTGGAAACAGAGTGTGACTACCTGGCTTCGCC
AGATTACCAGTGTGTACCTCCAGAAGAAGAGACAACTGAATTCCAGAAAAAGTTGAGCTTGTAC
TCATCCCAAGAGGAATTAGCCATCGATCTCAATAAAATTCCCTGGATCCAACGAAAAATGGAAG
AGGCCGTCAAAAAGGAGGTGAGGATTTTTACCCCTAGACGAAAGGAGATCAAACGAGGAATCAA
GGAGCTCGCTCAAATTATTGCAGCTATGATGGAAGAAAATGAAAAGCTGGACACCATTGCAAAG
CTGGATGAGCAGGAGTTTTGCCTGGATGCTGAAGAGCTGGAAAGGCTTCACGATGAATGTGAGG
AGGAGGTATCGAAGATTAGGAAAGATGTGGAGATGCACAACTTAGCCAAGAGCTACTTAACTGA
GCTTATCAAGGAAGAGTGCTGGAACTCAATGGCTGTGAAGGGCCGTGCTCTAAAGTGTTTTCAT
ATACCCTATGTGGTTGACAACTTCCCCATGAAGGAGCGCACAGAAGAAGAACTGCTGGAGCTGA
GTAAAGTTATACAGCAAAAGAAGACTGAGATAGAGTGTCTTAAGCTCCGGAAGGAAATCGTAGA
GGCGCAGTCTGCAGCCACTATGGTTAAAAAGCACCACGAAGAGGAGGAGGAGGAAGAGGAAGAG
GATGAAGAAAAGGTAGTGAAAAGTACCAGTTTGCCCAATTACCTACTTGGTAGTTTGAGCACTG
ATTTTGGGGCAGACACGTCTCTGTTGACAAACCAATTGGAACTTCATTCCAGAGAGGAGAAAAT
CAACCAAATTATATTGCTAAAAGATATCATTTACAATATAAAAAAGACTTTCAATAGTGAATTT
GATGCTGCCTATAAGCAAAAAGAGATTGAAATTGCACGCGTACAAGAAAAGAATGTTAGGATTG
CAGAAATCATTTCAGACCTGGAATTGGAAGAAAAAGTCTGGCAGCCAGTGTTTGAAGACAGCGA
GAAGCCAGAAAGAGCCCTTGTTGTGGAAGATGACGAGATTTCACTTCAGAAATACTTTGCTCCT
TGGCACAAAACCAAAGCAGAATTGCTCACAGCCTTTGATGCGGAGCGACTGCAACAAGCTCGGC
TCTCTGATGCAAGGCACAGGGGCCTGATGGACATGATGGGGGGCGTTCTGGAAGTCAAGAAAGA
AGACATCCTAAGGATGGTGATCCCTCAGCCTCCTTTCATGAGCAAACCTGATGCTCTGTGGAGC
GAAGAGGAAAGGAAGCAATTCAAAGAGTACGAGAAGAAAGTCAAGGAGCTGAATGAAGAGAGAG
ACAAATACAGAAAGTCTTTAGAAGCGGAACTGAAAAAACTTCAAAATGCTATTCAAGAGAACAC
ACAGAACTTCGATGAGCATTTGAAGAGACTCTTTGAAAGGAGAGTGAAGGCAGAGATGGTCATC
AACCAGGAGGAGCTGAAAATAAACAACATTGTGTTTTCTTTGCTGCTGGATGAAGAACTCAGCT
CCAGGGAACAGTTCCTGAACAACTACCTTCAGAAGAAGCAGGATGAGAAAACCAAGACTTCAGA
AGCCATCCAGAAAGCAAGAGAAGACCTGGACGTGTTCAAGGAGAACCATGACACCTTAGTGGCA
GAAGACAAAGTTCTGGATCGCAGCTTCAAAAAGGAATTTTCTGACATTTCTGGTCACCAGGTGG
ACGTACTCTACAAACTTTTTAAACGTCGGCCAAGGGTTCCGAAACAGAAAACACAGACAGAGGT
GAACACTCTTGTTCCTTATGGAGAGCGGCCAGGATCTGGCAAGTTAAATAAGGAAACCTTTGCC
CAGCTAATGAAGTCCATGGACGAGTTGGACAACGTCAGTAACATGCCAGAAGGCTTGGACCCCT
CAGTCTGGGAACATTTCTGCGCGACTAGACGAGCAAAAGTGGAAAATGAGTACAAAGTGAAGCA
GAAGGCGGCCTGCCTGTTGGAAATGACCACATTCCTCCGGAAGAGAATGGAAGATGACGATGTC
GTACATCATGAGATTGAGAGGGTATTCCACGAGCTCGTCCGATTACAGGACGAGAAAGTAAAAT
TCCAGGTGAATTTGACAGTGCAGATTCTTCTTAAACAAGGACAAGTGGAACTGGAGAATTTCCA
GTTGACTCTGGAATATTCTGACGCGATTCTCATCAATAAGAATATAATCGAAGAGTTGAATTCT
GTGATTCGGACTCAAGGACAAAAGAAAGTTGCTAGCATGATGGAAAGTAAAGAGGTCCACAAAG
GGATCTATCAGATTGAGTGGGAGCACAAGAAAATGGAGATGGAGATGGAGGACCTAAACCAGAA
GGCCTGGGACATCCAGATGCTGTTCTTCTCACGAGATCGGCAAAAGTACCTAAATGAACCCAAC
TACGAGGGCGTGATTGCTATTCAGATTGGAATAATGGAGCAAACCATCAGTGTTATAGATAAGA
ATCACAAGAAGAATGTAGAAAACTGCAAAAAACTACTCAAGAAGTTGGGAAAATGCAGCAATCA
GAAAGATGTAGCAAATTATAACCTAAGCTGTAATCTACGGGAGGAACTGGTGGCCGTCTCAGAG
AGACAAGACATCTGTAATGAAATAGGGTCTAAGCTGACCTGTGAGAAGATCGCCAGAGAACGCT
ATGACAACCTGATGAAACAGCAGAAGCTGACGAACATCTCCAAGCAGCAAGCTGAGCAGATTTC
AATTCTGCAGGCGGAAGTCGAAAGACTGAGGATGAAAACATTCCCTGCTCTCGTCCCAATGTAG
AATACCAGCAGGAGCAGAAGGTAGACCAATGCTGACCTAACGTCCCTTGGATAGAAACTTCTTT
CTCCCTTATCACAAAATTTAAGTAGGCCATCTCTCAGCCGCACGTTTTTAATAATGCAGTTTAG
GTGGTTACTCAGTATAGTTACCTGTCCTCCATGAATAAATGAGCAAAATATCACA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001419285	(Get FASTA)	NCBI Sequence Viewer
	NP_001419287	(Get FASTA)	NCBI Sequence Viewer
	NP_001419289	(Get FASTA)	NCBI Sequence Viewer
	XP_006231650	(Get FASTA)	NCBI Sequence Viewer
	XP_008758719	(Get FASTA)	NCBI Sequence Viewer
	XP_038957361	(Get FASTA)	NCBI Sequence Viewer
	XP_038957362	(Get FASTA)	NCBI Sequence Viewer
	XP_345042	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH92207	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000031090
	ENSRNOP00000031090.6
	ENSRNOP00000097602
	ENSRNOP00000097602.1
	ENSRNOP00000104447.1

RefSeq Acc Id:

XP_345042 ⟸ XM_345041

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSQGRERDEASATVIPSASAHYSGASLSVRWVQGFPSQNVHFVNDNTICYPSGNYVIFINLETK
KKTVLQCINGIVGVMATNVPGEVVAFSDRRLKPIIYIYSFPSLTRKIKLKGDILLDYNLLCFSY
CGTYLASYSSLPEFELALWNWEANVILCKKSNPGMDVSQMTFNPMNWRQMCLSSPSAVSVWTIE
RSNQEHHFRIRLVKLPQEDGTLSNETDMLFPTSLPKDLIYGPVLPLSAIAGLVGEEAETFRPKD
DIYPLLHPTMHCWTPSSDLYVGCEEGHLLMINTETLKVTVLQKLEEFPVLDGAQLINPLTLVYQ
KDGILASGIDGVIYSFIIKDTKYEVKPFLEFDGPVAHLAFSPSYKMLLIQTDKGSVYIYTFGTE
PVLDKLLEACDGKVQAISFITPGNKYFLTLTSSGEVSIFSIEDGTCTGRIFLRTHATTLACSPS
SSSAAMGTVDGSVYFLNILDVESPQLIHQAFLSKSPVKILIYDQRGIFLLVGTEEGKIFVIDAR
PSKSFQIFGYTESSKDMLQISTVSHVESDVVEVLVLSPLSETGRSRLEYFTLPIMLPQVVPENF
ADERGRLKDNFTHRYLYEVEHALSSAVLGFSESKIYGFCSQVPYICSYTMPVKEHTGICILKPQ
QKVQSKQYGAGTIYLSSHGLWLITIAKCGVLCIRDMFSLDTFVRCRSHSHHGQGIQNMKMSMDG
QHILVNGKDDNTLVYLKWKRLGSNIANEIFEHCHQLMLSLAKTVETECDYLASPDYQCVPPEEE
TTEFQKKLSLYSSQEELAIDLNKIPWIQRKMEEAVKKEVRIFTPRRKEIKRGIKELAQIIAAMM
EENEKLDTIAKLDEQEFCLDAEELERLHDECEEEVSKIRKDVEMHNLAKSYLTELIKEECWNSM
AVKGRALKCFHIPYVVDNFPMKERTEEELLELSKVIQQKKTEIECLKLRKEIVEAQSAATMVKK
HHEEEEEEEEEDEEKVVKSTSLPNYLLGSLSTDFGADTSLLTNQLELHSREEKINQIILLKDII
YNIKKTFNSEFDAAYKQKEIEIARVQEKNVRIAEIISDLELEEKVWQPVFEDSEKPERALVVED
DEISLQKYFAPWHKTKAELLTAFDAERLQQARLSDARHRGLMDMMGGVLEVKKEDILRMVIPQP
PFMSKPDALWSEEERKQFKEYEKKVKELNEERDKYRKSLEAELKKLQNAIQENTQNFDEHLKRL
FERRVKAEMVINQEELKINNIVFSLLLDEELSSREQFLNNYLQKKQDEKTKTSEAIQKAREDLD
VFKENHDTLVAEDKVLDRSFKKEFSDISGHQVDVLYKLFKRRPRVPKQKTQTEVNTLVPYGERP
GSGKLNKETFAQLMKSMDELDNVSNMPEGLDPSVWEHFCATRRAKVENEYKVKQKAACLLEMTT
FLRKRMEDDDVVHHEIERVFHELVRLQDEKVKFQVNLTVQILLKQGQVELENFQLTLEYSDAIL
INKNIIEELNSVIRTQGQKKVASMMESKEVHKGIYQIEWEHKKMEMEMEDLNQKAWDIQMLFFS
RDRQKYLNEPNYEGVIAIQIGIMEQTISVIDKNHKKNVENCKKLLKKLGKCSNQKDVANYNLSC
NLREELVAVSERQDICNEIGSKLTCEKIARERYDNLMKQQKLTNISKQQAEQISILQAEVERLR
MKTFPALVPM

hide sequence

RefSeq Acc Id:

XP_006231650 ⟸ XM_006231588

- Peptide Label:

isoform X5

- Sequence:

show sequence

MHCWTPSSDLYVGCEEGHLLMINTETLKVTVLQKLEEFPVLDGAQLINPLTLVYQKDGILASGI
DGVIYSFIIKDTKYEVKPFLEFDGPVAHLAFSPSYKMLLIQTDKGSVYIYTFGTEPVLDKLLEA
CDGKVQAISFITPGNKYFLTLTSSGEVSIFSIEDGTCTGRIFLRTHATTLACSPSSSSAAMGTV
DGSVYFLNILDVESPQLIHQAFLSKSPVKILIYDQRGIFLLVGTEEGKIFVIDARPSKSFQIFG
YTESSKDMLQISTVSHVESDVVEVLVLSPLSETGRSRLEYFTLPIMLPQVVPENFADERGRLKD
NFTHRYLYEVEHALSSAVLGFSESKIYGFCSQVPYICSYTMPVKEHTGICILKPQQKVQSKQYG
AGTIYLSSHGLWLITIAKCGVLCIRDMFSLDTFVRCRSHSHHGQGIQNMKMSMDGQHILVNGKD
DNTLVYLKWKRLGSNIANEIFEHCHQLMLSLAKTVETECDYLASPDYQCVPPEEETTEFQKKLS
LYSSQEELAIDLNKIPWIQRKMEEAVKKEVRIFTPRRKEIKRGIKELAQIIAAMMEENEKLDTI
AKLDEQEFCLDAEELERLHDECEEEVSKIRKDVEMHNLAKSYLTELIKEECWNSMAVKGRALKC
FHIPYVVDNFPMKERTEEELLELSKVIQQKKTEIECLKLRKEIVEAQSAATMVKKHHEEEEEEE
EEDEEKVVKSTSLPNYLLGSLSTDFGADTSLLTNQLELHSREEKINQIILLKDIIYNIKKTFNS
EFDAAYKQKEIEIARVQEKNVRIAEIISDLELEEKVWQPVFEDSEKPERALVVEDDEISLQKYF
APWHKTKAELLTAFDAERLQQARLSDARHRGLMDMMGGVLEVKKEDILRMVIPQPPFMSKPDAL
WSEEERKQFKEYEKKVKELNEERDKYRKSLEAELKKLQNAIQENTQNFDEHLKRLFERRVKAEM
VINQEELKINNIVFSLLLDEELSSREQFLNNYLQKKQDEKTKTSEAIQKAREDLDVFKENHDTL
VAEDKVLDRSFKKEFSDISGHQVDVLYKLFKRRPRVPKQKTQTEVNTLVPYGERPGSGKLNKET
FAQLMKSMDELDNVSNMPEGLDPSVWEHFCATRRAKVENEYKVKQKAACLLEMTTFLRKRMEDD
DVVHHEIERVFHELVRLQDEKVKFQVNLTVQILLKQGQVELENFQLTLEYSDAILINKNIIEEL
NSVIRTQGQKKVASMMESKEVHKGIYQIEWEHKKMEMEMEDLNQKAWDIQMLFFSRDRQKYLNE
PNYEGVIAIQIGIMEQTISVIDKNHKKNVENCKKLLKKLGKCSNQKDVANYNLSCNLREELVAV
SERQDICNEIGSKLTCEKIARERYDNLMKQQKLTNISKQQAEQISILQAEVERLRMKTFPALVP
M

hide sequence

RefSeq Acc Id:

XP_008758719 ⟸ XM_008760497

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSQGRERDEASATVIPSASAHYSGASLSVRWVQGFPSQNVHFVNDNTICYPSGNYVIFINLETK
KKTVLQCINGIVGVMATNVPGEVVAFSDRRLKPIIYIYSFPSLTRKIKLKGDILLDYNLLCFSY
CGTYLASYSSLPEFELALWNWEANVILCKKSNPGMDVSQMTFNPMNWRQMCLSSPSAVSVWTIE
RSNQEHHFRIRLVKLPQEDGTLSNETDMLFPTSLPKDLIYGPVLPLSAIAGLVGEEAETFRPKD
DIYPLLHPTMHCWTPSSDLYVGCEEGHLLMINTETLKVTVLQKLEEFPVLDGAQLINPLTLVYQ
KDGILASGIDGVIYSFIIKDTKYEVKPFLEFDGPVAHLAFSPSYKMLLIQTDKGSVYIYTFGTE
PVLDKLLEACDGKVQAISFITPGNKYFLTLTSSGEVSIFSIEDGTCTGRIFLRTHATTLACSPS
SSSAAMGTVDGSVYFLNILDVESPQLIHQAFLSKSPVKILIYDQRGIFLLVGTEEGKIFVIDAR
PSKSFQIFGYTESSKDMLQISTVSHVESDVVEVLVLSPLSETGRSRLEYFTLPIMLPQVVPENF
ADERGRLKDNFTHRYLYEVEHALSSAVLGFSESKIYGFCSQVPYICSYTMPVKDTFVRCRSHSH
HGQGIQNMKMSMDGQHILVNGKDDNTLVYLKWKRLGSNIANEIFEHCHQLMLSLAKTVETECDY
LASPDYQCVPPEEETTEFQKKLSLYSSQEELAIDLNKIPWIQRKMEEAVKKEVRIFTPRRKEIK
RGIKELAQIIAAMMEENEKLDTIAKLDEQEFCLDAEELERLHDECEEEVSKIRKDVEMHNLAKS
YLTELIKEECWNSMAVKGRALKCFHIPYVVDNFPMKERTEEELLELSKVIQQKKTEIECLKLRK
EIVEAQSAATMVKKHHEEEEEEEEEDEEKVVKSTSLPNYLLGSLSTDFGADTSLLTNQLELHSR
EEKINQIILLKDIIYNIKKTFNSEFDAAYKQKEIEIARVQEKNVRIAEIISDLELEEKVWQPVF
EDSEKPERALVVEDDEISLQKYFAPWHKTKAELLTAFDAERLQQARLSDARHRGLMDMMGGVLE
VKKEDILRMVIPQPPFMSKPDALWSEEERKQFKEYEKKVKELNEERDKYRKSLEAELKKLQNAI
QENTQNFDEHLKRLFERRVKAEMVINQEELKINNIVFSLLLDEELSSREQFLNNYLQKKQDEKT
KTSEAIQKAREDLDVFKENHDTLVAEDKVLDRSFKKEFSDISGHQVDVLYKLFKRRPRVPKQKT
QTEVNTLVPYGERPGSGKLNKETFAQLMKSMDELDNVSNMPEGLDPSVWEHFCATRRAKVENEY
KVKQKAACLLEMTTFLRKRMEDDDVVHHEIERVFHELVRLQDEKVKFQVNLTVQILLKQGQVEL
ENFQLTLEYSDAILINKNIIEELNSVIRTQGQKKVASMMESKEVHKGIYQIEWEHKKMEMEMED
LNQKAWDIQMLFFSRDRQKYLNEPNYEGVIAIQIGIMEQTISVIDKNHKKNVENCKKLLKKLGK
CSNQKDVANYNLSCNLREELVAVSERQDICNEIGSKLTCEKIARERYDNLMKQQKLTNISKQQA
EQISILQAEVERLRMKTFPALVPM

hide sequence

Ensembl Acc Id:

ENSRNOP00000031090 ⟸ ENSRNOT00000031925

RefSeq Acc Id:	XP_038957361 ⟸ XM_039101433
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038957362 ⟸ XM_039101434
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000097602 ⟸ ENSRNOT00000096906

Ensembl Acc Id:

ENSRNOP00000104447 ⟸ ENSRNOT00000131092

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LN76-F1-model_v2	AlphaFold	F1LN76	1-1674	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560545	AgrOrtholog
BioCyc Gene	G2FUF-55464	BioCyc
Ensembl Genes	ENSRNOG00000036585	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000031925	ENTREZGENE
	ENSRNOT00000031925.8	UniProtKB/TrEMBL
	ENSRNOT00000096906	ENTREZGENE
	ENSRNOT00000096906.2	UniProtKB/TrEMBL
	ENSRNOT00000131092.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7313272	IMAGE-MGC_LOAD
InterPro	Quinoprotein_ADH-like_supfam	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
MGC_CLONE	MGC:105725	IMAGE-MGC_LOAD
NCBI Gene	365476	ENTREZGENE
PANTHER	PTHR14885:SF1	UniProtKB/TrEMBL
	UNCHARACTERIZED	UniProtKB/TrEMBL
Pfam	CC_Cfap43	UniProtKB/TrEMBL
PhenoGen	Cfap43	PhenoGen
RatGTEx	ENSRNOG00000036585	RatGTEx
SMART	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50998	UniProtKB/TrEMBL
	WD40_like	UniProtKB/TrEMBL
UniProt	A0A8I6GM50	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LJ44_RAT	UniProtKB/TrEMBL
	F1LN76	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-07-29	Cfap43	cilia and flagella associated protein 43	LOC690101	hypothetical protein LOC690101	Data merged from RGD:1584065	737654	PROVISIONAL
2014-07-25	Cfap43	cilia and flagella associated protein 43	Wdr96	WD repeat domain 96	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-05-26	Wdr96	WD repeat domain 96	LOC365476	similar to chromosome 10 open reading frame 79	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-19	LOC690101	hypothetical protein LOC690101			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-02-09	LOC365476	similar to chromosome 10 open reading frame 79			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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