Sh3bgrl (SH3 domain binding glutamate rich protein like) - Rat Genome Database

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Gene: Sh3bgrl (SH3 domain binding glutamate rich protein like) Rattus norvegicus
Analyze
Symbol: Sh3bgrl (Ensembl: Sh3bgrl1)
Name: SH3 domain binding glutamate rich protein like (Ensembl:SH3 domain binding glutamate rich protein like 1)
RGD ID: 1560520
Description: Predicted to enable protein-RNA adaptor activity and ubiquitin-like ligase-substrate adaptor activity. Predicted to be involved in positive regulation of cytoplasmic translational initiation and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol; nucleus; and plasma membrane. Predicted to be active in cytoplasm. Orthologous to human SH3BGRL (SH3 domain binding glutamate rich protein like); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC302363; MGC189398; RGD1560520; SH3 domain binding glutamate rich protein like 1; SH3 domain binding glutamate-rich protein like; SH3 domain binding glutamate-rich protein like 1; SH3 domain binding glutamic acid-rich protein like; SH3-binding domain glutamic acid-rich protein like; Sh3bgrl1; similar to Sh3bgrl protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X78,242,704 - 78,343,633 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX78,242,405 - 78,343,634 (+)EnsemblGRCr8
mRatBN7.2X74,167,029 - 74,263,783 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX74,166,871 - 74,263,783 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX75,680,414 - 75,779,166 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X79,153,820 - 79,252,347 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X76,719,333 - 76,820,270 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X80,213,209 - 80,312,393 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX80,213,332 - 80,309,936 (+)Ensemblrn6Rnor6.0
Rnor_5.0X80,392,505 - 80,491,085 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X97,453,828 - 97,559,778 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX75,437,192 - 75,534,605 (+)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (EXP)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
alpha-Zearalanol  (EXP)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Bufotalin  (ISO)
cadmium atom  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (EXP)
clofibrate  (EXP)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
dioxygen  (EXP)
diuron  (EXP)
doxorubicin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
ethanol  (ISO)
folic acid  (ISO)
gentamycin  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
methidathion  (ISO)
miconazole  (ISO)
nefazodone  (EXP)
nimesulide  (EXP)
nitrates  (ISO)
Nutlin-3  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
p-toluidine  (EXP)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rimonabant  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP,ISO)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
trichloroethene  (EXP)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA,IEA,ISO)
plasma membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19056867   PMID:20458337   PMID:23376485   PMID:23580065  


Genomics

Comparative Map Data
Sh3bgrl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X78,242,704 - 78,343,633 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX78,242,405 - 78,343,634 (+)EnsemblGRCr8
mRatBN7.2X74,167,029 - 74,263,783 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX74,166,871 - 74,263,783 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX75,680,414 - 75,779,166 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X79,153,820 - 79,252,347 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X76,719,333 - 76,820,270 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X80,213,209 - 80,312,393 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX80,213,332 - 80,309,936 (+)Ensemblrn6Rnor6.0
Rnor_5.0X80,392,505 - 80,491,085 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X97,453,828 - 97,559,778 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX75,437,192 - 75,534,605 (+)NCBICelera
Cytogenetic MapXq22NCBI
SH3BGRL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X81,202,102 - 81,298,547 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX81,202,005 - 81,298,547 (+)Ensemblhg38GRCh38
GRCh37X80,457,601 - 80,554,046 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X80,344,278 - 80,440,702 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34X80,263,766 - 80,360,189NCBI
CeleraX80,697,460 - 80,794,205 (+)NCBICelera
Cytogenetic MapXq21.1NCBI
HuRefX74,037,981 - 74,133,875 (+)NCBIHuRef
CHM1_1X80,350,702 - 80,447,439 (+)NCBICHM1_1
T2T-CHM13v2.0X79,635,822 - 79,732,260 (+)NCBIT2T-CHM13v2.0
Sh3bgrl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X108,139,013 - 108,206,073 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX108,138,971 - 108,241,479 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38X109,095,407 - 109,162,467 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX109,095,365 - 109,197,873 (+)Ensemblmm10GRCm38
MGSCv37X106,290,746 - 106,357,806 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X105,298,126 - 105,365,186 (+)NCBIMGSCv36mm8
CeleraX95,917,832 - 95,984,749 (+)NCBICelera
Cytogenetic MapXDNCBI
cM MapX47.92NCBI
Sh3bgrl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555291,159,625 - 1,223,222 (+)Ensembl
ChiLan1.0NW_0049555291,159,704 - 1,223,222 (+)NCBIChiLan1.0ChiLan1.0
SH3BGRL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X80,668,157 - 80,766,884 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X80,672,077 - 80,770,495 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X70,268,591 - 70,367,132 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X80,372,945 - 80,471,646 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX80,372,945 - 80,471,646 (+)EnsemblpanPan2panpan1.1
SH3BGRL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X62,467,789 - 62,601,678 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX62,467,107 - 62,599,820 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX53,213,241 - 53,351,399 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X63,775,155 - 63,913,539 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX63,774,408 - 63,915,580 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X61,437,020 - 61,575,191 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X63,074,508 - 63,213,069 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X62,641,163 - 62,779,323 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sh3bgrl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X56,341,545 - 56,416,926 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365472,661,575 - 2,739,418 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365472,661,747 - 2,737,338 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SH3BGRL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X64,617,350 - 64,709,006 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X74,216,694 - 74,244,825 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SH3BGRL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X70,201,334 - 70,303,432 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX70,200,824 - 70,304,503 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606710,840,774 - 10,969,170 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sh3bgrl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248527,033,344 - 7,113,021 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248527,033,344 - 7,113,039 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Sh3bgrl
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X63,284,665 - 63,377,654 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Sh3bgrl
236 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:831
Count of miRNA genes:302
Interacting mature miRNAs:383
Transcripts:ENSRNOT00000042827
Prediction methods:Microtar, Miranda, Pita, Pita,Microtar, Pita,Targetscan, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X4493088389930883Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000042827   ⟹   ENSRNOP00000045257
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX80,213,332 - 80,309,936 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097939   ⟹   ENSRNOP00000089613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX78,242,405 - 78,343,633 (+)Ensembl
mRatBN7.2 EnsemblX74,166,871 - 74,263,783 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000144835   ⟹   ENSRNOP00000103322
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX78,242,719 - 78,343,634 (+)Ensembl
RefSeq Acc Id: NM_001173339   ⟹   NP_001166810
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X78,242,704 - 78,343,633 (+)NCBI
mRatBN7.2X74,167,141 - 74,263,781 (+)NCBI
Rnor_6.0X80,213,209 - 80,312,393 (+)NCBI
Rnor_5.0X80,392,505 - 80,491,085 (+)NCBI
CeleraX75,437,192 - 75,534,605 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001166810 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI69023 (Get FASTA)   NCBI Sequence Viewer  
  EDM07098 (Get FASTA)   NCBI Sequence Viewer  
  EDM07099 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000089613.2
  ENSRNOP00000103322.1
RefSeq Acc Id: NP_001166810   ⟸   NM_001173339
- UniProtKB: B5DFD8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000045257   ⟸   ENSRNOT00000042827
Ensembl Acc Id: ENSRNOP00000089613   ⟸   ENSRNOT00000097939
Ensembl Acc Id: ENSRNOP00000103322   ⟸   ENSRNOT00000144835

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B5DFD8-F1-model_v2 AlphaFold B5DFD8 1-114 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560520 AgrOrtholog
BioCyc Gene G2FUF-1875 BioCyc
Ensembl Genes ENSRNOG00000002280 Ensembl
  ENSRNOG00000069303 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000097939.2 UniProtKB/TrEMBL
  ENSRNOT00000144835.1 UniProtKB/TrEMBL
Gene3D-CATH Glutaredoxin UniProtKB/TrEMBL
InterPro Glut_rich_SH3_bd UniProtKB/TrEMBL
  SH3BGR UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/TrEMBL
KEGG Report rno:302363 UniProtKB/TrEMBL
NCBI Gene 302363 ENTREZGENE
PANTHER SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN UniProtKB/TrEMBL
  SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN UniProtKB/TrEMBL
Pfam SH3BGR UniProtKB/TrEMBL
PhenoGen Sh3bgrl PhenoGen
PIRSF SH3-bind_E-rich_L UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002280 RatGTEx
  ENSRNOG00000069303 RatGTEx
Superfamily-SCOP Thiordxn-like_fd UniProtKB/TrEMBL
UniProt A0A8I6GHH3_RAT UniProtKB/TrEMBL
  A0ABK0LCT6_RAT UniProtKB/TrEMBL
  B5DFD8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-04-24 Sh3bgrl  SH3 domain binding glutamate rich protein like  Sh3bgrl1  SH3 domain binding glutamate rich protein like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-03-23 Sh3bgrl1  SH3 domain binding glutamate rich protein like 1  Sh3bgrl1  SH3 domain binding glutamate-rich protein like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-03-16 Sh3bgrl1  SH3 domain binding glutamate-rich protein like 1  Sh3bgrl  SH3 domain binding glutamate-rich protein like  Name and Symbol changed 629549 APPROVED
2014-03-13 Sh3bgrl  SH3 domain binding glutamate-rich protein like  Sh3bgrl  SH3 domain binding glutamic acid-rich protein like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-04 Sh3bgrl  SH3 domain binding glutamic acid-rich protein like  Sh3bgrl  SH3-binding domain glutamic acid-rich protein like   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Sh3bgrl  SH3-binding domain glutamic acid-rich protein like   Sh3bgrl_predicted  SH3-binding domain glutamic acid-rich protein like (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Sh3bgrl_predicted  SH3-binding domain glutamic acid-rich protein like (predicted)  RGD1560520_predicted  similar to Sh3bgrl protein (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1560520_predicted  similar to Sh3bgrl protein (predicted)  LOC302363  similar to Sh3bgrl protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC302363  similar to Sh3bgrl protein      Symbol and Name status set to provisional 70820 PROVISIONAL