Sobp (sine oculis binding protein homolog) - Rat Genome Database

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Gene: Sobp (sine oculis binding protein homolog) Rattus norvegicus
Analyze
Symbol: Sobp
Name: sine oculis binding protein homolog
RGD ID: 1560479
Description: Predicted to enable SUMO polymer binding activity. Predicted to be involved in cochlea development; cognition; and inner ear morphogenesis. Predicted to act upstream of or within locomotory behavior and sensory perception of sound. Predicted to be active in nucleus. Orthologous to human SOBP (sine oculis binding protein homolog); INTERACTS WITH 6-propyl-2-thiouracil; allethrin; alpha-Zearalanol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: jackson circler protein 1; jcx1; LOC309860; RGD1560479; similar to RIKEN cDNA 5330439J01; sine oculis-binding protein homolog; sine oculis-binding protein homolog (Drosophila); sine oculis-binding protein homolog-like; sine oculis-binding protein homolog-like (Drosophila); Sobpl
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82048,064,445 - 48,243,607 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2048,064,445 - 48,243,607 (-)EnsemblGRCr8
mRatBN7.22046,482,265 - 46,661,452 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2046,482,765 - 46,663,541 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2048,218,691 - 48,378,244 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02047,868,868 - 48,028,261 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02048,554,915 - 48,713,122 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd2048,081,927 - 48,261,078 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive2049,149,644 - 49,328,797 (-)NCBILyon_Normotensive
Lyon_Hypertensive2049,211,397 - 49,390,561 (-)NCBILyon_Hypertensive
F344_StmMcwi2048,032,147 - 48,211,300 (-)NCBIF344_StmMcwi
Rnor_6.02047,731,713 - 47,910,466 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2047,750,762 - 47,910,375 (-)Ensemblrn6Rnor6.0
Rnor_5.02049,392,717 - 49,571,453 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42046,918,487 - 47,079,823 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2053,318,595 - 53,477,647 (+)NCBICelera
Cytogenetic Map20q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
allethrin  (EXP)
alpha-Zearalanol  (EXP)
amitrole  (EXP)
antirheumatic drug  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buta-1,3-diene  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
choline  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
cyhalothrin  (EXP)
cypermethrin  (EXP)
dexamethasone  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
indometacin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
levonorgestrel  (ISO)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
monobenzyl phthalate  (ISO)
Monobutylphthalate  (ISO)
monoethyl phthalate  (ISO)
nickel atom  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenylmercury acetate  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
pyrethrins  (EXP)
quercetin  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone undecanoate  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16962269   PMID:18579736   PMID:21035105   PMID:23086935  


Genomics

Comparative Map Data
Sobp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82048,064,445 - 48,243,607 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2048,064,445 - 48,243,607 (-)EnsemblGRCr8
mRatBN7.22046,482,265 - 46,661,452 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2046,482,765 - 46,663,541 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2048,218,691 - 48,378,244 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02047,868,868 - 48,028,261 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02048,554,915 - 48,713,122 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd2048,081,927 - 48,261,078 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive2049,149,644 - 49,328,797 (-)NCBILyon_Normotensive
Lyon_Hypertensive2049,211,397 - 49,390,561 (-)NCBILyon_Hypertensive
F344_StmMcwi2048,032,147 - 48,211,300 (-)NCBIF344_StmMcwi
Rnor_6.02047,731,713 - 47,910,466 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2047,750,762 - 47,910,375 (-)Ensemblrn6Rnor6.0
Rnor_5.02049,392,717 - 49,571,453 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42046,918,487 - 47,079,823 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2053,318,595 - 53,477,647 (+)NCBICelera
Cytogenetic Map20q13NCBI
SOBP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386107,490,117 - 107,661,306 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6107,490,073 - 107,661,306 (+)Ensemblhg38GRCh38
GRCh376107,811,321 - 107,982,510 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366107,918,010 - 108,089,206 (+)NCBIBuild 36Build 36hg18NCBI36
Celera6108,559,766 - 108,731,020 (+)NCBICelera
Cytogenetic Map6q21NCBI
HuRef6105,382,294 - 105,553,438 (+)NCBIHuRef
CHM1_16108,074,040 - 108,245,206 (+)NCBICHM1_1
T2T-CHM13v2.06108,669,050 - 108,840,201 (+)NCBIT2T-CHM13v2.0
Sobp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391042,878,484 - 43,059,144 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1042,878,496 - 43,050,526 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381043,002,488 - 43,183,139 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1043,002,500 - 43,174,530 (-)Ensemblmm10GRCm38
MGSCv371042,722,306 - 42,894,336 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361042,709,403 - 42,862,624 (-)NCBIMGSCv36mm8
Celera1043,869,724 - 44,040,986 (-)NCBICelera
Cytogenetic Map10B2NCBI
cM Map1022.89NCBI
Sobp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541132,745,235 - 32,881,138 (+)Ensembl
ChiLan1.0NW_00495541132,745,029 - 32,898,570 (+)NCBIChiLan1.0ChiLan1.0
SOBP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25127,508,131 - 127,653,487 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16125,398,165 - 125,543,409 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06105,302,531 - 105,472,674 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16109,168,069 - 109,337,549 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6109,168,069 - 109,337,549 (+)EnsemblpanPan2panpan1.1
SOBP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11264,653,814 - 64,794,144 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1264,664,288 - 64,794,358 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1264,437,857 - 64,600,059 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01265,495,687 - 65,658,309 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1265,495,190 - 65,657,997 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11264,853,883 - 65,014,980 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01264,699,469 - 64,861,386 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01264,972,924 - 65,135,154 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sobp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494699,580,809 - 99,727,629 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365643,855,672 - 3,982,401 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365643,855,526 - 4,000,809 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SOBP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl173,549,307 - 73,702,020 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1173,549,778 - 73,722,689 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2182,785,729 - 82,958,188 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SOBP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11366,202,747 - 66,374,992 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1366,227,944 - 66,374,736 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604038,527,901 - 38,699,086 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sobp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478014,616,469 - 14,773,237 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462478014,618,283 - 14,773,190 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Sobp
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11842,707,879 - 42,883,917 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Sobp
1222 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:27
Count of miRNA genes:27
Interacting mature miRNAs:27
Transcripts:ENSRNOT00000000348
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202668936256021148Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202679235356021148Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)202074558556021148Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202668936256021148Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202668936256021148Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202668936256021148Rat

Markers in Region
RH143624  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22046,661,712 - 46,661,839 (+)MAPPERmRatBN7.2
Rnor_6.02047,911,200 - 47,911,326NCBIRnor6.0
Rnor_5.02049,572,001 - 49,572,127UniSTSRnor5.0
RGSC_v3.42047,080,719 - 47,080,845UniSTSRGSC3.4
Celera2053,317,629 - 53,317,755UniSTS
RH 3.4 Map20557.56UniSTS
Cytogenetic Map20q13UniSTS
RH138911  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22046,576,524 - 46,576,708 (+)MAPPERmRatBN7.2
Rnor_6.02047,825,708 - 47,825,891NCBIRnor6.0
Rnor_5.02049,486,508 - 49,486,691UniSTSRnor5.0
RGSC_v3.42046,994,856 - 46,995,039UniSTSRGSC3.4
Celera2053,402,560 - 53,402,743UniSTS
RH 3.4 Map11666.5UniSTS
Cytogenetic Map20q13UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
10 14 12 150 244 88 87 62 39 56 22 375 231 11 223 76 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000000348   ⟹   ENSRNOP00000000348
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2048,064,445 - 48,243,607 (-)Ensembl
mRatBN7.2 Ensembl2046,482,765 - 46,663,541 (-)Ensembl
Rnor_6.0 Ensembl2047,750,762 - 47,910,375 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116176   ⟹   ENSRNOP00000087149
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2048,082,478 - 48,243,607 (-)Ensembl
mRatBN7.2 Ensembl2046,482,765 - 46,663,541 (-)Ensembl
RefSeq Acc Id: NM_001104640   ⟹   NP_001098110
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82048,064,445 - 48,243,607 (-)NCBI
mRatBN7.22046,482,273 - 46,661,450 (-)NCBI
Dahl_SR_JrHsd2048,081,927 - 48,261,078 (-)NCBI
Lyon_Normotensive2049,149,644 - 49,328,797 (-)NCBI
Lyon_Hypertensive2049,211,397 - 49,390,561 (-)NCBI
F344_StmMcwi2048,032,147 - 48,211,300 (-)NCBI
Rnor_6.02047,750,762 - 47,910,375 (-)NCBI
Rnor_5.02049,392,717 - 49,571,453 (-)NCBI
RGSC_v3.42046,918,487 - 47,079,823 (-)RGD
Celera2053,318,595 - 53,477,647 (+)RGD
Sequence:
RefSeq Acc Id: NM_001412110   ⟹   NP_001399039
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82048,064,445 - 48,243,521 (-)NCBI
mRatBN7.22046,482,273 - 46,661,364 (-)NCBI
Dahl_SR_JrHsd2048,081,927 - 48,260,992 (-)NCBI
Lyon_Normotensive2049,149,644 - 49,328,711 (-)NCBI
Lyon_Hypertensive2049,211,397 - 49,390,475 (-)NCBI
F344_StmMcwi2048,032,147 - 48,211,214 (-)NCBI
RefSeq Acc Id: XM_039098771   ⟹   XP_038954699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82048,075,332 - 48,093,462 (-)NCBI
mRatBN7.22046,482,265 - 46,511,319 (-)NCBI
RefSeq Acc Id: XM_063279175   ⟹   XP_063135245
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82048,075,332 - 48,243,605 (-)NCBI
RefSeq Acc Id: XM_063279176   ⟹   XP_063135246
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82048,075,332 - 48,243,606 (-)NCBI
RefSeq Acc Id: XM_063279177   ⟹   XP_063135247
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82048,075,332 - 48,226,451 (-)NCBI
RefSeq Acc Id: XM_063279178   ⟹   XP_063135248
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82048,075,332 - 48,226,451 (-)NCBI
RefSeq Acc Id: NP_001098110   ⟸   NM_001104640
- UniProtKB: A7XYI6 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000348   ⟸   ENSRNOT00000000348
RefSeq Acc Id: XP_038954699   ⟸   XM_039098771
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000087149   ⟸   ENSRNOT00000116176
RefSeq Acc Id: NP_001399039   ⟸   NM_001412110
- UniProtKB: A7XYI6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063135246   ⟸   XM_063279176
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A3P2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135245   ⟸   XM_063279175
- Peptide Label: isoform X1
- UniProtKB: A7XYI6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063135248   ⟸   XM_063279178
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063135247   ⟸   XM_063279177
- Peptide Label: isoform X3
Protein Domains
MYM-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A7XYI6-F1-model_v2 AlphaFold A7XYI6 1-864 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560479 AgrOrtholog
BioCyc Gene G2FUF-3350 BioCyc
Ensembl Genes ENSRNOG00000000316 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000000348 ENTREZGENE
  ENSRNOT00000000348.7 UniProtKB/Swiss-Prot
  ENSRNOT00000116176 ENTREZGENE
InterPro RAI2/SOBP UniProtKB/Swiss-Prot
  Znf_MYM UniProtKB/Swiss-Prot
KEGG Report rno:309860 UniProtKB/Swiss-Prot
NCBI Gene 309860 ENTREZGENE
PANTHER PTHR23186 UniProtKB/Swiss-Prot
  SINE OCULIS-BINDING PROTEIN HOMOLOG UniProtKB/Swiss-Prot
Pfam SOBP UniProtKB/Swiss-Prot
  zf-FCS UniProtKB/Swiss-Prot
PhenoGen Sobp PhenoGen
RatGTEx ENSRNOG00000000316 RatGTEx
UniProt A0A8I6A3P2 ENTREZGENE, UniProtKB/TrEMBL
  A7XYI6 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-09 Sobp  sine oculis binding protein homolog  Sobp  sine oculis-binding protein homolog (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-13 Sobp  sine oculis-binding protein homolog (Drosophila)   Sobpl  sine oculis-binding protein homolog-like (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-08 Sobpl  sine oculis-binding protein homolog-like (Drosophila)   RGD1560479  similar to RIKEN cDNA 5330439J01   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1560479  similar to RIKEN cDNA 5330439J01   RGD1560479_predicted  similar to RIKEN cDNA 5330439J01 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560479_predicted  similar to RIKEN cDNA 5330439J01 (predicted)  LOC309860  similar to RIKEN cDNA 5330439J01  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC309860  similar to RIKEN cDNA 5330439J01      Symbol and Name status set to provisional 70820 PROVISIONAL