Zbtb20 (zinc finger and BTB domain containing 20) - Rat Genome Database

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Gene: Zbtb20 (zinc finger and BTB domain containing 20) Rattus norvegicus
Analyze
Symbol: Zbtb20
Name: zinc finger and BTB domain containing 20
RGD ID: 1560387
Description: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including cellular response to glucose stimulus; positive regulation of metabolic process; and regulation of gene expression. Predicted to be located in cytoplasm and nucleus. Predicted to be active in nucleoplasm. Orthologous to human ZBTB20 (zinc finger and BTB domain containing 20); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC288105; RGD1560387; similar to Zbtb20 protein; zinc finger and BTB domain-containing protein 20
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Zbtb20Tn(pb-Bhr7)1Wmukf
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81170,558,010 - 71,297,039 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1170,580,930 - 70,736,237 (-)EnsemblGRCr8
mRatBN7.21157,052,129 - 57,791,214 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1157,072,880 - 57,510,210 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1165,865,277 - 66,604,324 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01158,527,515 - 59,266,582 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01157,583,947 - 58,333,500 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01162,014,925 - 62,561,113 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1162,014,925 - 62,451,184 (-)Ensemblrn6Rnor6.0
Rnor_5.01161,127,464 - 61,865,305 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41158,662,837 - 59,399,213 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1156,625,650 - 57,340,896 (-)NCBICelera
Cytogenetic Map11q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,6-dinitrotoluene  (EXP)
2-butoxyethanol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bilirubin IXalpha  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Bufotalin  (ISO)
buspirone  (EXP)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (EXP)
choline  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
daunorubicin  (ISO)
DDT  (EXP)
decabromodiphenyl ether  (EXP)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
dimethyl sulfoxide  (ISO)
dioxygen  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
finasteride  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
geraniol  (ISO)
glafenine  (EXP)
glyphosate  (EXP)
GSK-J4  (ISO)
hydroquinone O-beta-D-glucopyranoside  (ISO)
indometacin  (ISO)
irinotecan  (ISO)
L-methionine  (ISO)
melphalan  (ISO)
methidathion  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
propiconazole  (EXP,ISO)
resorcinol  (ISO)
SB 431542  (ISO)
sevoflurane  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
styrene  (ISO)
succimer  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
valproic acid  (EXP,ISO)
vitamin E  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO)
nuclear body  (IEA,ISO)
nucleoplasm  (IBA,IEA,ISO)
nucleus  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11744704   PMID:17301088   PMID:18669658   PMID:22082260   PMID:23776228   PMID:28327662   PMID:30281617   PMID:31505169   PMID:38009899  


Genomics

Comparative Map Data
Zbtb20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81170,558,010 - 71,297,039 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1170,580,930 - 70,736,237 (-)EnsemblGRCr8
mRatBN7.21157,052,129 - 57,791,214 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1157,072,880 - 57,510,210 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1165,865,277 - 66,604,324 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01158,527,515 - 59,266,582 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01157,583,947 - 58,333,500 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01162,014,925 - 62,561,113 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1162,014,925 - 62,451,184 (-)Ensemblrn6Rnor6.0
Rnor_5.01161,127,464 - 61,865,305 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41158,662,837 - 59,399,213 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1156,625,650 - 57,340,896 (-)NCBICelera
Cytogenetic Map11q21NCBI
ZBTB20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383114,314,500 - 115,147,288 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3114,314,500 - 115,147,356 (-)Ensemblhg38GRCh38
GRCh373114,033,347 - 114,866,135 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363115,540,207 - 116,348,817 (-)NCBIBuild 36Build 36hg18NCBI36
Build 343115,540,214 - 116,348,817NCBI
Celera3112,464,305 - 113,273,740 (-)NCBICelera
Cytogenetic Map3q13.31NCBI
HuRef3111,429,714 - 112,238,947 (-)NCBIHuRef
CHM1_13114,019,853 - 114,829,143 (-)NCBICHM1_1
T2T-CHM13v2.03117,035,293 - 117,867,765 (-)NCBIT2T-CHM13v2.0
Zbtb20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391642,728,008 - 43,462,981 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1642,696,244 - 43,462,965 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381642,875,689 - 43,634,392 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1642,875,881 - 43,642,602 (+)Ensemblmm10GRCm38
MGSCv371643,247,397 - 43,619,241 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361643,429,640 - 43,538,402 (+)NCBIMGSCv36mm8
Celera1643,602,896 - 43,973,689 (+)NCBICelera
Cytogenetic Map16B4NCBI
cM Map1628.44NCBI
Zbtb20
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542714,409,700 - 14,453,926 (-)Ensembl
ChiLan1.0NW_00495542714,409,700 - 15,231,495 (-)NCBIChiLan1.0ChiLan1.0
ZBTB20
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22112,299,158 - 113,129,391 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13112,303,936 - 113,134,146 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03111,445,520 - 112,275,946 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13118,365,142 - 118,806,716 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3118,389,250 - 118,431,453 (-)EnsemblpanPan2panpan1.1
ZBTB20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13318,860,824 - 19,277,691 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3318,529,132 - 18,759,058 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3318,969,248 - 19,387,126 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03318,774,605 - 19,529,023 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3318,773,579 - 19,528,961 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13318,915,382 - 19,333,223 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03318,961,846 - 19,380,040 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03319,174,504 - 19,925,316 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Zbtb20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602134,975,624 - 135,767,604 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365361,776,081 - 1,829,837 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365361,776,065 - 2,546,286 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13145,591,894 - 145,644,880 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113144,855,821 - 145,668,320 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZBTB20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12265,715,470 - 66,528,195 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2266,511,237 - 66,524,064 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604199,934,836 - 100,649,336 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb20
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473134,108,927 - 34,172,231 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473133,307,686 - 34,202,576 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Zbtb20
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1428,271,708 - 28,529,209 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zbtb20
5015 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:443
Count of miRNA genes:228
Interacting mature miRNAs:296
Transcripts:ENSRNOT00000002692
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)112252474682951192Rat
1598841Memor7Memory QTL 7exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)113330600878306008Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)114644316891443168Rat
1598811Bp291Blood pressure QTL 2911.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113330600878306008Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)113191546976915469Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)113642841681428416Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)113461876079618760Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)115893182292356038Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)115775483796071021Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)113674945981749459Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)113674945981749459Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)116859932196497754Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat
631510Spl2Serum phospholipid level QTL 24.1blood phospholipid amount (VT:0006084)serum phospholipid level (CMO:0001171)112755668572556685Rat

Markers in Region
D11Got47  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,615,452 - 57,615,671 (+)MAPPERmRatBN7.2
Rnor_6.01162,556,663 - 62,556,883NCBIRnor6.0
Rnor_5.01161,689,504 - 61,689,724UniSTSRnor5.0
RGSC_v3.41159,220,404 - 59,220,625RGDRGSC3.4
RGSC_v3.41159,220,405 - 59,220,625UniSTSRGSC3.4
Celera1157,166,394 - 57,166,614UniSTS
RGSC_v3.11159,277,994 - 59,278,214RGD
RH 3.4 Map11512.6UniSTS
RH 3.4 Map11512.6RGD
RH 2.0 Map11207.7RGD
Cytogenetic Map11q21UniSTS
D11Got49  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,615,444 - 57,615,683 (+)MAPPERmRatBN7.2
Rnor_6.01162,556,655 - 62,556,895NCBIRnor6.0
Rnor_5.01161,689,496 - 61,689,736UniSTSRnor5.0
RGSC_v3.41159,220,396 - 59,220,638RGDRGSC3.4
RGSC_v3.41159,220,397 - 59,220,637UniSTSRGSC3.4
Celera1157,166,386 - 57,166,626UniSTS
RGSC_v3.11159,277,985 - 59,278,227RGD
RH 3.4 Map11513.1RGD
RH 3.4 Map11513.1UniSTS
Cytogenetic Map11q21UniSTS
D11Got109  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,433,867 - 57,434,075 (+)MAPPERmRatBN7.2
Rnor_6.01162,375,769 - 62,375,974NCBIRnor6.0
Rnor_5.01161,508,610 - 61,508,815UniSTSRnor5.0
RGSC_v3.41159,038,711 - 59,038,916UniSTSRGSC3.4
Celera1156,985,616 - 56,985,821UniSTS
Cytogenetic Map11q21UniSTS
D16Mit40  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,702,900 - 57,703,140 (+)MAPPERmRatBN7.2
Rnor_6.01157,618,781 - 57,619,020NCBIRnor6.0
Rnor_5.01161,776,247 - 61,776,486UniSTSRnor5.0
RGSC_v3.41159,309,732 - 59,309,971UniSTSRGSC3.4
Celera1157,253,207 - 57,253,446UniSTS
Cytogenetic Map11q21UniSTS
BF400664  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81170,852,300 - 70,852,476 (+)Marker Load Pipeline
mRatBN7.21157,346,447 - 57,346,623 (+)MAPPERmRatBN7.2
Rnor_6.01162,288,367 - 62,288,542NCBIRnor6.0
Rnor_5.01161,421,087 - 61,421,262UniSTSRnor5.0
RGSC_v3.41158,940,594 - 58,940,769UniSTSRGSC3.4
Celera1156,898,275 - 56,898,450UniSTS
RH 3.4 Map11546.92UniSTS
Cytogenetic Map11q21UniSTS
BF419565  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,178,654 - 57,178,786 (+)MAPPERmRatBN7.2
Rnor_6.01162,120,650 - 62,120,781NCBIRnor6.0
Rnor_5.01161,253,620 - 61,253,751UniSTSRnor5.0
RGSC_v3.41158,771,190 - 58,771,321UniSTSRGSC3.4
Celera1156,731,417 - 56,731,548UniSTS
RH 3.4 Map11546.92UniSTS
Cytogenetic Map11q21UniSTS
RH138206  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,119,018 - 57,119,218 (+)MAPPERmRatBN7.2
Rnor_6.01162,061,018 - 62,061,217NCBIRnor6.0
Rnor_5.01161,194,089 - 61,194,288UniSTSRnor5.0
RGSC_v3.41158,709,395 - 58,709,594UniSTSRGSC3.4
Celera1156,671,766 - 56,671,965UniSTS
Cytogenetic Map11q21UniSTS
RH138427  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,073,865 - 57,074,040 (+)MAPPERmRatBN7.2
Rnor_6.01162,015,911 - 62,016,085NCBIRnor6.0
Rnor_5.01161,148,982 - 61,149,156UniSTSRnor5.0
RGSC_v3.41158,663,823 - 58,663,997UniSTSRGSC3.4
Celera1156,626,636 - 56,626,810UniSTS
RH 3.4 Map41028.2UniSTS
Cytogenetic Map11q21UniSTS
RH139605  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,073,363 - 57,073,555 (+)MAPPERmRatBN7.2
Rnor_6.01162,015,409 - 62,015,600NCBIRnor6.0
Rnor_5.01161,148,480 - 61,148,671UniSTSRnor5.0
RGSC_v3.41158,663,321 - 58,663,512UniSTSRGSC3.4
Celera1156,626,134 - 56,626,325UniSTS
Cytogenetic Map11q21UniSTS
RH140468  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,073,363 - 57,073,491 (+)MAPPERmRatBN7.2
Rnor_6.01162,015,409 - 62,015,536NCBIRnor6.0
Rnor_5.01161,148,480 - 61,148,607UniSTSRnor5.0
RGSC_v3.41158,663,321 - 58,663,448UniSTSRGSC3.4
Celera1156,626,134 - 56,626,261UniSTS
Cytogenetic Map11q21UniSTS
AU049731  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,776,874 - 57,777,139 (+)MAPPERmRatBN7.2
Rnor_6.01157,693,306 - 57,693,570NCBIRnor6.0
Rnor_5.01161,850,847 - 61,851,111UniSTSRnor5.0
RGSC_v3.41159,384,874 - 59,385,138UniSTSRGSC3.4
Celera1157,326,559 - 57,326,823UniSTS
Cytogenetic Map11q21UniSTS
Zbtb20  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,084,533 - 57,085,345 (+)MAPPERmRatBN7.2
Rnor_6.01162,026,579 - 62,027,390NCBIRnor6.0
Rnor_5.01161,159,650 - 61,160,461UniSTSRnor5.0
RGSC_v3.41158,674,920 - 58,675,731UniSTSRGSC3.4
Celera1156,637,304 - 56,638,115UniSTS
Cytogenetic Map11q21UniSTS
ZBTB20_9462  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,075,429 - 57,076,381 (+)MAPPERmRatBN7.2
Rnor_6.01162,017,475 - 62,018,426NCBIRnor6.0
Rnor_5.01161,150,546 - 61,151,497UniSTSRnor5.0
RGSC_v3.41158,665,387 - 58,666,338UniSTSRGSC3.4
Celera1156,628,200 - 56,629,151UniSTS
Cytogenetic Map11q21UniSTS
STS-Z40707  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21157,295,345 - 57,295,800 (+)MAPPERmRatBN7.2
Rnor_6.01162,237,168 - 62,237,622NCBIRnor6.0
Rnor_5.01161,369,888 - 61,370,342UniSTSRnor5.0
RGSC_v3.41158,888,671 - 58,889,125UniSTSRGSC3.4
RGSC_v3.41225,076,071 - 25,077,759UniSTSRGSC3.4
Celera1156,847,170 - 56,847,624UniSTS
Cytogenetic Map11q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 91 59 6 355 191 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000081443   ⟹   ENSRNOP00000072458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1170,580,930 - 70,694,333 (-)Ensembl
mRatBN7.2 Ensembl1157,072,880 - 57,510,210 (-)Ensembl
Rnor_6.0 Ensembl1162,014,925 - 62,451,184 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093141   ⟹   ENSRNOP00000076280
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1170,580,930 - 70,631,528 (-)Ensembl
mRatBN7.2 Ensembl1157,084,763 - 57,328,562 (-)Ensembl
Rnor_6.0 Ensembl1162,017,717 - 62,128,044 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093179   ⟹   ENSRNOP00000076193
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1162,017,745 - 62,396,967 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093382   ⟹   ENSRNOP00000076135
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1162,017,705 - 62,067,655 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093596   ⟹   ENSRNOP00000076312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1162,017,758 - 62,396,909 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093686   ⟹   ENSRNOP00000076181
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1162,027,571 - 62,451,149 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119899   ⟹   ENSRNOP00000091721
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1157,072,880 - 57,090,559 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000153867   ⟹   ENSRNOP00000104373
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1170,580,930 - 70,736,237 (-)Ensembl
RefSeq Acc Id: NM_001105880   ⟹   NP_001099350
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81170,558,010 - 71,297,039 (-)NCBI
mRatBN7.21157,052,129 - 57,791,214 (-)NCBI
Rnor_6.01162,014,925 - 62,561,113 (-)NCBI
Rnor_5.01161,127,464 - 61,865,305 (-)NCBI
RGSC_v3.41158,662,837 - 59,399,213 (-)RGD
Celera1156,625,650 - 57,340,896 (-)RGD
Sequence:
RefSeq Acc Id: NP_001099350   ⟸   NM_001105880
- UniProtKB: A0A1W2Q655 (UniProtKB/TrEMBL),   D4A1U1 (UniProtKB/TrEMBL),   A6IR28 (UniProtKB/TrEMBL),   A6IR32 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000076312   ⟸   ENSRNOT00000093596
Ensembl Acc Id: ENSRNOP00000076181   ⟸   ENSRNOT00000093686
Ensembl Acc Id: ENSRNOP00000076135   ⟸   ENSRNOT00000093382
Ensembl Acc Id: ENSRNOP00000072458   ⟸   ENSRNOT00000081443
Ensembl Acc Id: ENSRNOP00000076193   ⟸   ENSRNOT00000093179
Ensembl Acc Id: ENSRNOP00000076280   ⟸   ENSRNOT00000093141
Ensembl Acc Id: ENSRNOP00000091721   ⟸   ENSRNOT00000119899
Ensembl Acc Id: ENSRNOP00000104373   ⟸   ENSRNOT00000153867
Protein Domains
BTB   C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A1W2Q655-F1-model_v2 AlphaFold A0A1W2Q655 1-741 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698159
Promoter ID:EPDNEW_R8681
Type:multiple initiation site
Name:Zbtb20_1
Description:zinc finger and BTB domain containing 20
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01162,396,967 - 62,397,027EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560387 AgrOrtholog
BioCyc Gene G2FUF-21327 BioCyc
Ensembl Genes ENSRNOG00000056716 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000081443.3 UniProtKB/TrEMBL
  ENSRNOT00000093141 ENTREZGENE
  ENSRNOT00000093141.3 UniProtKB/TrEMBL
  ENSRNOT00000153867.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
  Potassium Channel Kv1.1, Chain A UniProtKB/TrEMBL
InterPro BTB/POZ-like UniProtKB/TrEMBL
  BTB/POZ_fold UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  ZnFinger_BTB_dom_contain UniProtKB/TrEMBL
KEGG Report rno:288105 UniProtKB/TrEMBL
NCBI Gene 288105 ENTREZGENE
PANTHER AGAP004733-PA UniProtKB/TrEMBL
  ZINC FINGER AND BTB DOMAIN CONTAINING 45 UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zbtb20 PhenoGen
PROSITE BTB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000056716 RatGTEx
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP BTB/POZ_fold UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A1W2Q655 ENTREZGENE
  A0A1W2Q6H7_RAT UniProtKB/TrEMBL
  A0ABK0L4B1_RAT UniProtKB/TrEMBL
  A6IR28 ENTREZGENE, UniProtKB/TrEMBL
  A6IR32 ENTREZGENE, UniProtKB/TrEMBL
  D4A1U1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A1W2Q655 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Zbtb20  zinc finger and BTB domain containing 20   Zbtb20_predicted  zinc finger and BTB domain containing 20 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Zbtb20_predicted  zinc finger and BTB domain containing 20 (predicted)  RGD1560387_predicted  similar to Zbtb20 protein (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1560387_predicted  similar to Zbtb20 protein (predicted)  LOC288105  similar to Zbtb20 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC288105  similar to Zbtb20 protein      Symbol and Name status set to provisional 70820 PROVISIONAL