Advanced Search (OLGA)

Gene: Ncald (neurocalcin delta) Rattus norvegicus

Analyze

Symbol:

Ncald

Name:

neurocalcin delta

RGD ID:

1560287

Description:

Enables actin binding activity and alpha-tubulin binding activity. Predicted to be involved in calcium-mediated signaling and regulation of signal transduction. Predicted to act upstream of or within regulation of systemic arterial blood pressure. Orthologous to human NCALD (neurocalcin delta); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

neurocalcin-delta

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NCALD (neurocalcin delta)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Ncald (neurocalcin delta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ncald (neurocalcin delta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NCALD (neurocalcin delta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NCALD (neurocalcin delta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ncald (neurocalcin delta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NCALD (neurocalcin delta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NCALD (neurocalcin delta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ncald (neurocalcin delta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ncald (neurocalcin delta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SLC3A2 (solute carrier family 3 member 2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	NCALD (neurocalcin delta)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ncald (neurocalcin delta)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ncalda (neurocalcin delta a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	FRQ1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	FRQ1	Alliance	DIOPT (Hieranoid\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	Nca	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Nca	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ncald	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	70,417,683 - 70,849,763 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	70,419,433 - 70,849,482 (-)	Ensembl				GRCr8
mRatBN7.2	7	68,532,671 - 68,964,740 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	68,534,421 - 68,964,496 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	70,413,123 - 70,509,252 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	72,615,615 - 72,711,744 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	72,483,638 - 72,579,779 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	76,199,305 - 76,632,847 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	76,199,306 - 76,488,216 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	76,320,073 - 76,747,866 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	72,875,314 - 72,976,373 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	65,599,587 - 65,694,343 (-)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-dinitrotoluene (EXP)

2-methoxyethanol (EXP)

2-methylcholine (ISO)

4,4'-sulfonyldiphenol (EXP)

4-hydroxyphenyl retinamide (ISO)

7,12-dimethyltetraphene (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (EXP,ISO)

alpha-Zearalanol (EXP)

antirheumatic drug (ISO)

asbestos (ISO)

atrazine (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

bromobenzene (EXP)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

cadmium sulfate (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

chloroprene (ISO)

chlorpyrifos (ISO)

cocaine (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

cytarabine (ISO)

dibutyl phthalate (ISO)

diethyl phthalate (ISO)

diethylstilbestrol (EXP)

diisobutyl phthalate (ISO)

diisononyl phthalate (ISO)

diuron (EXP)

dorsomorphin (ISO)

endosulfan (EXP)

entinostat (ISO)

ethanol (EXP,ISO)

flutamide (EXP)

folic acid (ISO)

genistein (ISO)

gentamycin (EXP)

hydroquinone O-beta-D-glucopyranoside (ISO)

inulin (ISO)

ivermectin (ISO)

kojic acid (ISO)

L-ascorbic acid (ISO)

lipopolysaccharide (ISO)

mercury dibromide (ISO)

methamphetamine (EXP)

methapyrilene (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-nitrosodiethylamine (EXP)

nickel atom (ISO)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

panobinostat (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

phenobarbital (ISO)

phenylephrine (EXP)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

Soman (EXP)

sunitinib (ISO)

tetrachloromethane (EXP)

thapsigargin (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

tunicamycin (ISO)

valdecoxib (EXP)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

calcium-mediated signaling (IBA,ISO)

regulation of signal transduction (IBA)

regulation of systemic arterial blood pressure (ISO)

Molecular Function

actin binding (IBA,IDA,IEA,ISO)

alpha-tubulin binding (IDA)

calcium ion binding (IBA,IEA)

clathrin binding (IEA,ISO)

metal ion binding (IEA)

protein binding (IPI,ISO)

tubulin binding (IBA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ONE-GC membrane guanylate cyclase, a trimodal odorant signal transducer.	Duda T and Sharma RK, Biochem Biophys Res Commun. 2008 Mar 7;367(2):440-5. doi: 10.1016/j.bbrc.2007.12.153. Epub 2008 Jan 4.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Identification of Ca2+-dependent binding partners for the neuronal calcium sensor protein neurocalcin delta: interaction with actin, clathrin and tubulin.	Ivings L, etal., Biochem J 2002 May 1;363(Pt 3):599-608.
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:22871113	PMID:23088492	PMID:23376485

Genomics

Comparative Map Data

Ncald
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	70,417,683 - 70,849,763 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	70,419,433 - 70,849,482 (-)	Ensembl				GRCr8
mRatBN7.2	7	68,532,671 - 68,964,740 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	68,534,421 - 68,964,496 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	70,413,123 - 70,509,252 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	72,615,615 - 72,711,744 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	72,483,638 - 72,579,779 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	76,199,305 - 76,632,847 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	76,199,306 - 76,488,216 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	76,320,073 - 76,747,866 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	72,875,314 - 72,976,373 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	65,599,587 - 65,694,343 (-)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

NCALD
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	101,686,542 - 102,124,907 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	101,686,542 - 102,124,907 (-)	Ensembl			hg38	GRCh38
GRCh37	8	102,698,770 - 103,137,135 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	102,767,946 - 103,206,311 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	8	102,768,135 - 102,872,363	NCBI
Celera	8	98,883,681 - 99,322,037 (-)	NCBI		Celera
Cytogenetic Map	8	q22.3	NCBI
HuRef	8	97,897,521 - 98,335,560 (-)	NCBI		HuRef
CHM1_1	8	102,739,049 - 103,177,412 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	102,812,429 - 103,250,775 (-)	NCBI		T2T-CHM13v2.0

Ncald
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	37,366,419 - 37,792,816 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	37,366,419 - 37,792,814 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	15	37,366,175 - 37,792,519 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	37,366,175 - 37,792,570 (-)	Ensembl			mm10	GRCm38
MGSCv37	15	37,295,930 - 37,722,183 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	15	37,310,764 - 37,736,996 (-)	NCBI		MGSCv36	mm8
Celera	15	37,985,866 - 38,409,233 (-)	NCBI		Celera
Cytogenetic Map	15	B3.1	NCBI
cM Map	15	14.94	NCBI

Ncald
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955417	26,535,859 - 26,563,301 (-)	Ensembl
ChiLan1.0	NW_004955417	26,535,859 - 26,885,944 (-)	NCBI	ChiLan1.0	ChiLan1.0

NCALD
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	119,034,818 - 119,478,001 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	94,571,093 - 95,014,200 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	98,324,885 - 98,767,804 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	100,488,400 - 100,931,079 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	100,488,400 - 100,520,842 (-)	Ensembl			panPan2	panpan1.1

NCALD
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	3,367,036 - 3,678,505 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	3,369,570 - 3,512,566 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	3,366,895 - 3,737,167 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	3,524,683 - 3,895,032 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	3,524,689 - 3,838,298 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	3,367,969 - 3,738,210 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	3,480,588 - 3,850,984 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	3,497,712 - 3,868,004 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ncald
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	34,035,139 - 34,426,252 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	41,573,238 - 41,852,337 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	41,573,238 - 41,852,349 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NCALD
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	35,186,182 - 35,367,412 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	34,924,261 - 35,369,393 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	37,798,498 - 38,264,852 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NCALD
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	96,530,414 - 96,735,422 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	96,530,302 - 96,644,281 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666039	43,688,236 - 44,147,311 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ncald
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624763	18,920,207 - 19,084,875 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624763	18,918,781 - 19,191,221 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ncald
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	210,861,987 - 211,038,276 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ncald
1584 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	678
Count of miRNA genes:	297
Interacting mature miRNAs:	374
Transcripts:	ENSRNOT00000064513
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10053722	Scort27	Serum corticosterone level QTL 27	2.41	0.0083	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	45113903	90113903	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	26638057	71638057	Rat
1357336	Gluco6	Glucose level QTL 6	3.4		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	7	51700643	96700643	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	24179478	86817926	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	31770293	110435881	Rat
1298525	Cm1	Cardiac mass QTL 1	2.7		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	7	56625161	101625161	Rat
631513	Scl7	Serum cholesterol level QTL 7	4.1		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	39845902	84845902	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	46307490	127866166	Rat
10755453	Coatc12	Coat color QTL 12		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	32998702	77998702	Rat
1559283	Emca4	Estrogen-induced mammary cancer QTL 4	3.7		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	7	63889858	108889858	Rat
1300151	Bp181	Blood pressure QTL 181	3.36		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	7	55498584	105834451	Rat
7411605	Foco14	Food consumption QTL 14	24.1	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	36178764	81178764	Rat
738030	Anxrr8	Anxiety related response QTL 8	4.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	48475049	93475049	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	10112916	99900612	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
631534	Lnnr1	Liver neoplastic nodule remodeling QTL 1	3.85	0.001	liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)	7	36178764	81178764	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	40540077	123682549	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	49682832	115766396	Rat
1298528	Bp169	Blood pressure QTL 169		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	62963207	107963207	Rat
1576303	Ept7	Estrogen-induced pituitary tumorigenesis QTL 7	3.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	7	63889858	108889858	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	21541977	86817926	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	49682832	115766396	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	49682832	115766396	Rat
2303582	Gluco53	Glucose level QTL 53	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	7	48603087	93603087	Rat
61439	Cia8	Collagen induced arthritis QTL 8	5.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	7	27182914	72182914	Rat

Markers in Region

RH132339

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	68,532,693 - 68,532,882 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	76,199,328 - 76,199,516	NCBI	Rnor6.0
Rnor_5.0	7	76,320,096 - 76,320,284	UniSTS	Rnor5.0
RGSC_v3.4	7	72,875,337 - 72,875,525	UniSTS	RGSC3.4
Celera	7	65,599,610 - 65,599,798	UniSTS
RH 3.4 Map	7	639.8	UniSTS
Cytogenetic Map	7	q22	UniSTS

RH134791

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	46,249,506 - 46,249,701 (+)	MAPPER	mRatBN7.2
mRatBN7.2	7	68,612,943 - 68,613,138 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	76,278,848 - 76,279,042	NCBI	Rnor6.0
Rnor_6.0	12	52,307,627 - 52,307,821	NCBI	Rnor6.0
Rnor_5.0	12	54,042,998 - 54,043,192	UniSTS	Rnor5.0
Rnor_5.0	7	76,398,810 - 76,399,004	UniSTS	Rnor5.0
RGSC_v3.4	7	72,960,558 - 72,960,752	UniSTS	RGSC3.4
RGSC_v3.4	12	46,394,273 - 46,394,467	UniSTS	RGSC3.4
Celera	12	47,805,399 - 47,805,593	UniSTS
Celera	7	65,678,528 - 65,678,722	UniSTS
Cytogenetic Map	7	q22	UniSTS
Cytogenetic Map	12	q16	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	13	67	170	91	90	59	93	59	6	368	194	13	149	91	92	31	24	24

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001024371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264159	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264160	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010053035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC087105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212932	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000064513 ⟹ ENSRNOP00000062447

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	76,199,306 - 76,294,663 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080024 ⟹ ENSRNOP00000073597

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	70,419,433 - 70,849,482 (-)	Ensembl
mRatBN7.2 Ensembl	7	68,534,421 - 68,964,496 (-)	Ensembl
Rnor_6.0 Ensembl	7	76,199,311 - 76,488,216 (-)	Ensembl

RefSeq Acc Id:

NM_001024371 ⟹ NP_001019542

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	70,417,683 - 70,513,764 (-)	NCBI
mRatBN7.2	7	68,532,671 - 68,628,761 (-)	NCBI
Rnor_6.0	7	76,199,305 - 76,294,663 (-)	NCBI
Rnor_5.0	7	76,320,073 - 76,747,866 (-)	NCBI
RGSC_v3.4	7	72,875,314 - 72,976,373 (-)	RGD
Celera	7	65,599,587 - 65,694,343 (-)	RGD

Sequence:

show sequence

GGCTTGTGAGAATCTGGTGGATGCTGGACCTTGCTGCTGCTGCCACCGTGCCGCTGCCGCTATT
GCTGTCACTTCTGCTGTGGCTGTTGCTTCCCAGGGGCTGCAGGAGCATGGACTACTAAACCCCA
CACTTCTTCAGCTTGAGTTGAGTTCTTGCTACCAGAATGGGGAAACAGAACAGCAAGCTGCGCC
CTGAAGTCATGCAGGACTTACTGGAAAGCACAGACTTCACAGAGCATGAGATCCAGGAGTGGTA
CAAAGGCTTCTTGAGAGACTGCCCCAGCGGACATTTGTCAATGGAAGAGTTTAAGAAAATATAC
GGGAACTTTTTCCCTTATGGGGATGCTTCCAAATTCGCAGAGCACGTCTTCCGCACCTTCGATG
CAAATGGAGATGGGACGATAGACTTTAGAGAGTTCATCATAGCCCTGAGTGTGACATCAAGGGG
CAAGCTGGAGCAGAAGCTGAAGTGGGCCTTCAGCATGTATGACCTGGATGGCAACGGCTACATC
AGCAAGGCAGAAATGCTGGAGATTGTGCAGGCAATCTACAAGATGGTCTCCTCGGTCATGAAAA
TGCCTGAAGATGAATCAACCCCAGAGAAAAGGACAGAAAAGATCTTCCGCCAGATGGACACCAA
CAGAGATGGAAAACTCTCCCTGGAAGAATTCATCCGAGGGGCCAAAAGCGACCCATCCATTGTG
CGTCTCCTGCAGTGCGACCCCAGCAGTGCCGGCCAGTTCTGAGCCCTGCACCCTCAAGGACGAT
ACAGCTGCTCGTGTCTCTCCTGATTAGCTTTTAAACTTACTTCGTTTTTGTTTTTTGCTTTTTT
TTTGTTTTTGTTTTTGCCAAACAATATTGATGGTGAGACTGTCCCCTCTTCAGTCAGATGTGCC
CTCCTGTGACACTTGTGCCCCTTGCTTCTTTCATGGCGGACGTGGATGCCCAGAGCCCGTGTGC
TTGTGGAAAGCATGCACACACTTCGTTGTGTTCCCTGCTGGATGACTGTTTAATAATTTCTTTC
CTTTCATTCTAATGTCTCTACCTTAAAACCCAAGACTTGAGGGGCAAGAGAAGGGAAGTACATT
CAGCCCAGAGCTCCTTCTGCAAGCTTTGAGGGGCTTTGTGGAAATACAAAACTCCTAACCTGGG
TCTGTTGTCAAGCATGCCTTCGGAACTAGAGTGGACACCTGAGGCTAAGTTTCCTAAGAACAGG
TTACCCTCTGGGGTAAGGTTATTAAAGGGAGCAGGGACATTCCCCCCAGAGGCCCACTCCCACC
CCAGCAGGCTGTAATTTCTAAGCTGTGAACTTTTCGAGGTAAATTAACAGAGATGGGAAAGACG
CTCAGCTGTTTAGTTTTTTTTTTCTCCCAGAGGTTTACATAAGTTGAGCTAATATGTTTCTTTT
AAAAATCAAACACATATTCCATAACCAGACCCATCTTGCTGCCTACTTGTGAGACTGCTGTATA
TAAAACATTGGGTATTGCAGACCAAATTAAGTGTTTTGCCTTGTAAATGCATGTTTAGTGAGCG
CTAATACAAGCTTACTACAGAAGACTGTTCTAGTAGCTTATCGTGAAGCCAACTACGATGAATG
TCAATGTCTTGTTTTAAAGTCATAGCTGTCTTTGCACAAATGTACCAGTTAACAAGTATATTTT
ATATACTCCATAAAGTCACAAAAGAATGGTGACAAGGGCCCAGGTTTGATTTCTAATGGCTTTC
TTGTGTCAGGGTGGCTGGAGGACCGGAGGAAGCCAGCTTTCTAGGCGTCTTGTCCATCAGAGCA
GCACTGGGAGCTCCAGTGACAAGCGGCCAAGGCCCGGCAGCAGGGAGCACAGGTGCGACACTAG
TCTAAGAGACGAAGGTTCTACAGATGTAGAAAAACAGAGACTTCCTAGCAATTTAACCCACATC
CTTGGTGCAGGAGCCACGTCTAGAACGTTCATTTCTCCTGCCCTCAGGTACCCTTCAAACAGTC
AGGTGTGGGATATCCAGGGAATTCACCCAATATAAGAGCCACAAAGGGACCTGCAGTGTCCAAG
GCAGACCATGGAGATCCAACAGCTCTCTTCCTCACTGTGTTCTTCAAATGCAGCCAAGCTGAGC
TGCTGCCTGGGCTGGTTCATCTCATGCACACTACTTTGAAATGAGGGCTGGAAATAAAATCTCC
TGGCCACAGGCAAGCCAAGCCTCACACACAGCTTCCATCGGAAGGCCTAAATACTCAAGAGTGT
TGGTGGCAGACCCTGCCTAAAAGGAGGCAGGAAGGTCTCTGTCCGGCAGCAGTCAAGCCATGTC
TGTAGAACAAGACCTGCAAAATGTAAACTAGCCCCCTGCAGGTCCCTGACAGAAGTTTAAACTT
GAATGGTGGATTAAAATGAATCCCTTAGTGGGTTGAAATTTTGAGACCTAGATTTTGTAATCTT
AATTTCTCCTAGTGTCATTTCCTTACATTTTGTACTAAGGCTTGCCAACTCCTGTGGACCAAAT
GGTAAAGTCTGTTTTTGCAAAGAAGAATCAACTCAAGTGGTTGAACATAAACAGGGGAAGGGAG
CCAGCACGCTGGTGTTTGCGAGGTAGGCTCATCGACTTCGGCTCTGCCTCAGGTTGAGCCAGAC
CCTGTTTCCTAGAGCTCAGAGTTGGAGTGGGAACTAGAGGTGATCTCCAGCTATTCGGACATGA
AAGGGCCGGATGCAGAGGTTACGAACCCTGTGGTCACCAGAAAGCATGAAGAGTCCCAGAAGTG
GTTACCCACAGACCTAACAGACCTATCTGTATGTTTCCTTCCTCCTCCCCACCTTGCCCCAGGA
AGGCATTGGATGTGTGTAATTTTATGCATGTATGTTTGACCAAGGGACTTCACAGCATCAAGAG
GGCCAAGTGCCTGAAGACATCTGTCACTCCTGTGCCTAGGCATTGTTTTCCTGGTGTTCAGAGA
TCTCTGGCAGAAGTGGAGCCTGTTTTGTTCCAAGTAAAGGCAGCTTGTGCTGTCAAGGGACTGG
ACTAAATGACTAAATGGCTTATGACTTGAAGGATGTTTCAGAATGCCTGACTGTTCATACCTCG
CTTAAGATAGAGAAGGGATGCTGTGGGTACTATCCCGCCCCAGCAATACTCCCCGGGGGACTGT
CTACAGATGAATTTAATAATATAGATGTCATGCTATGTGGAGTGGCCCCGTTATCAGTTGGTTG
TGTAGCTCTTGCCTGGCATTAAAGCATGTTTATTATTTAATATTAAAAAAAAAAAAAAAAAAAA
AAAAAA

hide sequence

RefSeq Acc Id:

XM_008765456 ⟹ XP_008763678

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	70,417,683 - 70,849,763 (-)	NCBI
mRatBN7.2	7	68,532,671 - 68,964,740 (-)	NCBI
Rnor_6.0	7	76,199,305 - 76,632,847 (-)	NCBI

Sequence:

show sequence

AGAGTACCTGGCTGAGGCCGGCGGCTGCATCAGGGCAAGGCGGGGCAGCCGCTGCACCTGTGCA
TCCCAGCTTAGGCTGGTTCCCTCACCCCGACAGCAGCAGCTGAGACCCATCCCACGGAGAGGCC
ACGGCCACGGTGGAGTGTCCTATGAGAGCCTGAGACAGAGTGAAGCCACCTTGGATCAACGTTG
AGCCGCAGCCCACTGCTGAGAGGACCTGCCTGGGCAGAGCAGCTCCGGGGCCTGAGGTGCTGGG
ACTGCACACATTGAGTTCTTGCTACCAGAATGGGGAAACAGAACAGCAAGCTGCGCCCTGAAGT
CATGCAGGACTTACTGGAAAGCACAGACTTCACAGAGCATGAGATCCAGGAGTGGTACAAAGGC
TTCTTGAGAGACTGCCCCAGCGGACATTTGTCAATGGAAGAGTTTAAGAAAATATACGGGAACT
TTTTCCCTTATGGGGATGCTTCCAAATTCGCAGAGCACGTCTTCCGCACCTTCGATGCAAATGG
AGATGGGACGATAGACTTTAGAGAGTTCATCATAGCCCTGAGTGTGACATCAAGGGGCAAGCTG
GAGCAGAAGCTGAAGTGGGCCTTCAGCATGTATGACCTGGATGGCAACGGCTACATCAGCAAGG
CAGAAATGCTGGAGATTGTGCAGGCAATCTACAAGATGGTCTCCTCGGTCATGAAAATGCCTGA
AGATGAATCAACCCCAGAGAAAAGGACAGAAAAGATCTTCCGCCAGATGGACACCAACAGAGAT
GGAAAACTCTCCCTGGAAGAATTCATCCGAGGGGCCAAAAGCGACCCATCCATTGTGCGTCTCC
TGCAGTGCGACCCCAGCAGTGCCGGCCAGTTCTGAGCCCTGCACCCTCAAGGACGATACAGCTG
CTCGTGTCTCTCCTGATTAGCTTTTAAACTTACTTCGTTTTTGTTTTTTGCTTTTTTTTTGTTT
TTGTTTTTGCCAAACAATATTGATGGTGAGACTGTCCCCTCTTCAGTCAGATGTGCCCTCCTGT
GACACTTGTGCCCCTTGCTTCTTTCATGGCGGACGTGGATGCCCAGAGCCCGTGTGCTTGTGGA
AAGCATGCACACACTTCGTTGTGTTCCCTGCTGGATGACTGTTTAATAATTTCTTTCCTTTCAT
TCTAATGTCTCTACCTTAAAACCCAAGACTTGAGGGGCAAGAGAAGGGAAGTACATTCAGCCCA
GAGCTCCTTCTGCAAGCTTTGAGGGGCTTTGTGGAAATACAAAACTCCTAACCTGGGTCTGTTG
TCAAGCATGCCTTCGGAACTAGAGTGGACACCTGAGGCTAAGTTTCCTAAGAACAGGTTACCCT
CTGGGGTAAGGTTATTAAAGGGAGCAGGGACATTCCCCCCAGAGGCCCACTCCCACCCCAGCAG
GCTGTAATTTCTAAGCTGTGAACTTTTCGAGGTAAATTAACAGAGATGGGAAAGACGCTCAGCT
GTTTAGTTTTTTTTTTCTCCCAGAGGTTTACATAAGTTGAGCTAATATGTTTCTTTTAAAAATC
AAACACATATTCCATAACCAGACCCATCTTGCTGCCTACTTGTGAGACTGCTGTATATAAAACA
TTGGGTATTGCAGACCAAATTAAGTGTTTTGCCTTGTAAATGCATGTTTAGTGAGCGCTAATAC
AAGCTTACTACAGAAGACTGTTCTAGTAGCTTATCGTGAAGCCAACTACGATGAATGTCAATGT
CTTGTTTTAAAGTCATAGCTGTCTTTGCACAAATGTACCAGTTAACAAGTATATTTTATATACT
CCATAAAGTCACAAAAGAATGGTGACAAGGGCCCAGGTTTGATTTCGAATGGCTTTCTTGTGTC
AGGGTGGCTGGAGGACCGGAGGAAGCCAGCTTTCTAGGCGTCTTGTCCATCAGAGCAGCACTGG
GAGCTCCAGTGACAAGCGGCCAAGGCCCGGCAGCAGGGAGCACAGGTGCGACACTAGTCTAAGA
GACGAAGGTTCTACAGATGTAGAAAAACAGAGACTTCCTAGCAATTTAACCCACATCCTTGGTG
CAGGAGCCACGTCTAGAACGTTCATTTCTCCTGCCCTCAGGTACCCTTCAAACAGTCAGGTGTG
GGATATCCAGGGAATTCACCCAATATAAGAGCCACAAAGGGACCTGCAGTGTCCAAGGCAGACC
ATGGAGATCCAACAGCTCTCTTCCTCACTGTGTTCTTCAAATGCAGCCAAGCTGAGCTGCTGCC
TGGGCTGGTTCATCTCATGCACACTACTTTGAAATGAGGGCTGGAAATAAAATCTCCTGGCCAC
AGGCAAGCCAAGCCTCACACACAGCTTCCATCGGAAGGCCTAAATACTCAAGAGTGTTGGTGGC
AGACCCTGCCTAAAAGGAGGCAGGAAGGTCTCTGTCCGGCAGCAGTCAAGCCATGTCTGTAGAA
CAAGACCTGCAAAATGTAAACTAGCCCCCTGCAGGTCCCTGACAGAAGTTTAAACTTGAATGGT
GGATTAAAATGAATCCCTTAGTGGGTTGAAATTTTGAGACCTAGATTTTGTAATCTTAATTTCT
CCTAGTGTCATTTCCTTACATTTTGTACTAAGGCTTGCCAACTCCTGTGGACCAAATGGTAAAG
TCTGTTTTTGCAAAGAAGAATCAACTCAAGTGGTTGAACATAAACAGGGGAAGGGAGCCAGCAC
GCTGGTGTTTGCGAGGTAGGCTCATCGACTTCGGCTCTGCCTCAGGTTGAGCCAGACCCTGTTT
CCTAGAGCTCAGAGTTGGAGTGGGAACTAGAGGTGATCTCCAGCTATTCGGACATGAAAGGGCC
GGATGCAGAGGTTACGAACCCTGTGGTCACCAGAAAGCATGAAGAGTCCCAGAAGTGGTTACCC
ACAGACCTAACAGACCTATCTGTATGTTTCCTTCCTCCTCCCCACCTTGCCCCAGGAAGGCATT
GGATGTGTGTAATTTTATGCATGTATGTTTGACCAAGGGACTTCACAGCATCAAGAGGGCCAAG
TGCCTGAAGACATCTGTCACTCCTGTGCCTAGGCATTGTTTTCCTGGTGTTCAGAGATCTCTGG
CAGAAGTGGAGCCTGTTTTGTTCCAAGTAAAGGCAGCTTGTGCTGTCAAGGGACTGGACTAAAT
GACTAAATGGCTTATGACTTGAAGGATGTTTCAGAATGCCTGACTGTTCATACCTCGCTTAAGA
TAGAGAAGGGATGCTGTGGGTACTATCCCGCCCCAGCAATACTCCCCGGGGGACTGTCTACAGA
TGAATTTAATAATATAGATGTCATGCTATGTGGAGTGGCCCCGTTATCAGTTGGTTGTGTAGCT
CTTGCCTGGCATTAAAGCATGTTTATTATTTAATATTA

hide sequence

RefSeq Acc Id:

XM_017595065 ⟹ XP_017450554

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	70,417,683 - 70,849,477 (-)	NCBI
mRatBN7.2	7	68,532,671 - 68,964,496 (-)	NCBI
Rnor_6.0	7	76,199,305 - 76,632,600 (-)	NCBI

Sequence:

show sequence

CGCTGGGAGCGGCCGTGGCGGTGAGTCGCAGCGCCTTCCCTCCTCTGGCGGGAACGGGAGCCGC
AGCTGGGCGGGCGAGCAGGGGGACCTGAGCCGGGAGCGGTGGCCAGGGGAAAGGCGCACTCGGT
GGAGTGTCCTATGAGAGCCTGAGACAGAGTGAAGCCACCTTGGATCAACGTTGAGCCGCAGCCC
ACTGCTGAGAGGACCTGCCTGGGCAGAGCAGCTCCGGGGCCTGAGGTGCTGGGACTGCACACAT
TGAGTTCTTGCTACCAGAATGGGGAAACAGAACAGCAAGCTGCGCCCTGAAGTCATGCAGGACT
TACTGGAAAGCACAGACTTCACAGAGCATGAGATCCAGGAGTGGTACAAAGGCTTCTTGAGAGA
CTGCCCCAGCGGACATTTGTCAATGGAAGAGTTTAAGAAAATATACGGGAACTTTTTCCCTTAT
GGGGATGCTTCCAAATTCGCAGAGCACGTCTTCCGCACCTTCGATGCAAATGGAGATGGGACGA
TAGACTTTAGAGAGTTCATCATAGCCCTGAGTGTGACATCAAGGGGCAAGCTGGAGCAGAAGCT
GAAGTGGGCCTTCAGCATGTATGACCTGGATGGCAACGGCTACATCAGCAAGGCAGAAATGCTG
GAGATTGTGCAGGCAATCTACAAGATGGTCTCCTCGGTCATGAAAATGCCTGAAGATGAATCAA
CCCCAGAGAAAAGGACAGAAAAGATCTTCCGCCAGATGGACACCAACAGAGATGGAAAACTCTC
CCTGGAAGAATTCATCCGAGGGGCCAAAAGCGACCCATCCATTGTGCGTCTCCTGCAGTGCGAC
CCCAGCAGTGCCGGCCAGTTCTGAGCCCTGCACCCTCAAGGACGATACAGCTGCTCGTGTCTCT
CCTGATTAGCTTTTAAACTTACTTCGTTTTTGTTTTTTGCTTTTTTTTTGTTTTTGTTTTTGCC
AAACAATATTGATGGTGAGACTGTCCCCTCTTCAGTCAGATGTGCCCTCCTGTGACACTTGTGC
CCCTTGCTTCTTTCATGGCGGACGTGGATGCCCAGAGCCCGTGTGCTTGTGGAAAGCATGCACA
CACTTCGTTGTGTTCCCTGCTGGATGACTGTTTAATAATTTCTTTCCTTTCATTCTAATGTCTC
TACCTTAAAACCCAAGACTTGAGGGGCAAGAGAAGGGAAGTACATTCAGCCCAGAGCTCCTTCT
GCAAGCTTTGAGGGGCTTTGTGGAAATACAAAACTCCTAACCTGGGTCTGTTGTCAAGCATGCC
TTCGGAACTAGAGTGGACACCTGAGGCTAAGTTTCCTAAGAACAGGTTACCCTCTGGGGTAAGG
TTATTAAAGGGAGCAGGGACATTCCCCCCAGAGGCCCACTCCCACCCCAGCAGGCTGTAATTTC
TAAGCTGTGAACTTTTCGAGGTAAATTAACAGAGATGGGAAAGACGCTCAGCTGTTTAGTTTTT
TTTTTCTCCCAGAGGTTTACATAAGTTGAGCTAATATGTTTCTTTTAAAAATCAAACACATATT
CCATAACCAGACCCATCTTGCTGCCTACTTGTGAGACTGCTGTATATAAAACATTGGGTATTGC
AGACCAAATTAAGTGTTTTGCCTTGTAAATGCATGTTTAGTGAGCGCTAATACAAGCTTACTAC
AGAAGACTGTTCTAGTAGCTTATCGTGAAGCCAACTACGATGAATGTCAATGTCTTGTTTTAAA
GTCATAGCTGTCTTTGCACAAATGTACCAGTTAACAAGTATATTTTATATACTCCATAAAGTCA
CAAAAGAATGGTGACAAGGGCCCAGGTTTGATTTCGAATGGCTTTCTTGTGTCAGGGTGGCTGG
AGGACCGGAGGAAGCCAGCTTTCTAGGCGTCTTGTCCATCAGAGCAGCACTGGGAGCTCCAGTG
ACAAGCGGCCAAGGCCCGGCAGCAGGGAGCACAGGTGCGACACTAGTCTAAGAGACGAAGGTTC
TACAGATGTAGAAAAACAGAGACTTCCTAGCAATTTAACCCACATCCTTGGTGCAGGAGCCACG
TCTAGAACGTTCATTTCTCCTGCCCTCAGGTACCCTTCAAACAGTCAGGTGTGGGATATCCAGG
GAATTCACCCAATATAAGAGCCACAAAGGGACCTGCAGTGTCCAAGGCAGACCATGGAGATCCA
ACAGCTCTCTTCCTCACTGTGTTCTTCAAATGCAGCCAAGCTGAGCTGCTGCCTGGGCTGGTTC
ATCTCATGCACACTACTTTGAAATGAGGGCTGGAAATAAAATCTCCTGGCCACAGGCAAGCCAA
GCCTCACACACAGCTTCCATCGGAAGGCCTAAATACTCAAGAGTGTTGGTGGCAGACCCTGCCT
AAAAGGAGGCAGGAAGGTCTCTGTCCGGCAGCAGTCAAGCCATGTCTGTAGAACAAGACCTGCA
AAATGTAAACTAGCCCCCTGCAGGTCCCTGACAGAAGTTTAAACTTGAATGGTGGATTAAAATG
AATCCCTTAGTGGGTTGAAATTTTGAGACCTAGATTTTGTAATCTTAATTTCTCCTAGTGTCAT
TTCCTTACATTTTGTACTAAGGCTTGCCAACTCCTGTGGACCAAATGGTAAAGTCTGTTTTTGC
AAAGAAGAATCAACTCAAGTGGTTGAACATAAACAGGGGAAGGGAGCCAGCACGCTGGTGTTTG
CGAGGTAGGCTCATCGACTTCGGCTCTGCCTCAGGTTGAGCCAGACCCTGTTTCCTAGAGCTCA
GAGTTGGAGTGGGAACTAGAGGTGATCTCCAGCTATTCGGACATGAAAGGGCCGGATGCAGAGG
TTACGAACCCTGTGGTCACCAGAAAGCATGAAGAGTCCCAGAAGTGGTTACCCACAGACCTAAC
AGACCTATCTGTATGTTTCCTTCCTCCTCCCCACCTTGCCCCAGGAAGGCATTGGATGTGTGTA
ATTTTATGCATGTATGTTTGACCAAGGGACTTCACAGCATCAAGAGGGCCAAGTGCCTGAAGAC
ATCTGTCACTCCTGTGCCTAGGCATTGTTTTCCTGGTGTTCAGAGATCTCTGGCAGAAGTGGAG
CCTGTTTTGTTCCAAGTAAAGGCAGCTTGTGCTGTCAAGGGACTGGACTAAATGACTAAATGGC
TTATGACTTGAAGGATGTTTCAGAATGCCTGACTGTTCATACCTCGCTTAAGATAGAGAAGGGA
TGCTGTGGGTACTATCCCGCCCCAGCAATACTCCCCGGGGGACTGTCTACAGATGAATTTAATA
ATATAGATGTCATGCTATGTGGAGTGGCCCCGTTATCAGTTGGTTGTGTAGCTCTTGCCTGGCA
TTAAAGCATGTTTATTATTTAATATTA

hide sequence

RefSeq Acc Id:

XM_039079786 ⟹ XP_038935714

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	70,417,683 - 70,849,480 (-)	NCBI
mRatBN7.2	7	68,532,671 - 68,938,680 (-)	NCBI

RefSeq Acc Id:

XM_039079787 ⟹ XP_038935715

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	70,417,683 - 70,849,477 (-)	NCBI
mRatBN7.2	7	68,532,671 - 68,938,681 (-)	NCBI

RefSeq Acc Id:

XM_063264157 ⟹ XP_063120227

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	70,417,683 - 70,849,500 (-)	NCBI

RefSeq Acc Id:

XM_063264158 ⟹ XP_063120228

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	70,417,683 - 70,849,747 (-)	NCBI

RefSeq Acc Id:

XM_063264159 ⟹ XP_063120229

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	70,417,683 - 70,849,500 (-)	NCBI

RefSeq Acc Id:

XM_063264160 ⟹ XP_063120230

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	70,417,683 - 70,849,489 (-)	NCBI

RefSeq Acc Id:

XM_063264162 ⟹ XP_063120232

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	70,417,683 - 70,513,211 (-)	NCBI

RefSeq Acc Id:

XR_010053035

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	70,424,512 - 70,513,813 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001019542	(Get FASTA)	NCBI Sequence Viewer
	XP_008763678	(Get FASTA)	NCBI Sequence Viewer
	XP_017450554	(Get FASTA)	NCBI Sequence Viewer
	XP_038935714	(Get FASTA)	NCBI Sequence Viewer
	XP_038935715	(Get FASTA)	NCBI Sequence Viewer
	XP_063120227	(Get FASTA)	NCBI Sequence Viewer
	XP_063120228	(Get FASTA)	NCBI Sequence Viewer
	XP_063120229	(Get FASTA)	NCBI Sequence Viewer
	XP_063120230	(Get FASTA)	NCBI Sequence Viewer
	XP_063120232	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87105	(Get FASTA)	NCBI Sequence Viewer
	EDM16373	(Get FASTA)	NCBI Sequence Viewer
	EDM16374	(Get FASTA)	NCBI Sequence Viewer
	EDM16375	(Get FASTA)	NCBI Sequence Viewer
	EDM16376	(Get FASTA)	NCBI Sequence Viewer
	EDM16377	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000073597
	ENSRNOP00000073597.1
GenBank Protein	Q5PQN0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001019542 ⟸ NM_001024371
- UniProtKB:	Q5PQN0 (UniProtKB/Swiss-Prot), A6HR47 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKF AEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAI YKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLLQCDPSSAGQ F hide sequence

RefSeq Acc Id:	XP_008763678 ⟸ XM_008765456
- Peptide Label:	isoform X1
- UniProtKB:	Q5PQN0 (UniProtKB/Swiss-Prot), A6HR47 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKF AEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAI YKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLLQCDPSSAGQ F hide sequence

RefSeq Acc Id:	XP_017450554 ⟸ XM_017595065
- Peptide Label:	isoform X1
- UniProtKB:	Q5PQN0 (UniProtKB/Swiss-Prot), A6HR47 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKF AEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAI YKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLLQCDPSSAGQ F hide sequence

Ensembl Acc Id:

ENSRNOP00000073597 ⟸ ENSRNOT00000080024

Ensembl Acc Id:

ENSRNOP00000062447 ⟸ ENSRNOT00000064513

RefSeq Acc Id:	XP_038935715 ⟸ XM_039079787
- Peptide Label:	isoform X1
- UniProtKB:	Q5PQN0 (UniProtKB/Swiss-Prot), A6HR47 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935714 ⟸ XM_039079786
- Peptide Label:	isoform X1
- UniProtKB:	Q5PQN0 (UniProtKB/Swiss-Prot), A6HR47 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120228 ⟸ XM_063264158
- Peptide Label:	isoform X1
- UniProtKB:	Q5PQN0 (UniProtKB/Swiss-Prot), A6HR47 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120227 ⟸ XM_063264157
- Peptide Label:	isoform X1
- UniProtKB:	Q5PQN0 (UniProtKB/Swiss-Prot), A6HR47 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120229 ⟸ XM_063264159
- Peptide Label:	isoform X1
- UniProtKB:	Q5PQN0 (UniProtKB/Swiss-Prot), A6HR47 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120230 ⟸ XM_063264160
- Peptide Label:	isoform X1
- UniProtKB:	Q5PQN0 (UniProtKB/Swiss-Prot), A6HR47 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120232 ⟸ XM_063264162
- Peptide Label:	isoform X1
- UniProtKB:	Q5PQN0 (UniProtKB/Swiss-Prot), A6HR47 (UniProtKB/TrEMBL)

Protein Domains

EF-hand

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5PQN0-F1-model_v2	AlphaFold	Q5PQN0	1-193	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695297

Promoter ID:

EPDNEW_R5822

Type:

multiple initiation site

Name:

Ncald_1

Description:

neurocalcin delta

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	76,294,666 - 76,294,726	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560287	AgrOrtholog
BioCyc Gene	G2FUF-33631	BioCyc
Ensembl Genes	ENSRNOG00000042978	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000080024	ENTREZGENE
	ENSRNOT00000080024.2	UniProtKB/Swiss-Prot
Gene3D-CATH	EF-hand	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7193019	IMAGE-MGC_LOAD
InterPro	EF-hand-dom_pair	UniProtKB/Swiss-Prot
	EF_Hand_1_Ca_BS	UniProtKB/Swiss-Prot
	EF_hand_dom	UniProtKB/Swiss-Prot
	Recoverin	UniProtKB/Swiss-Prot
KEGG Report	rno:553106	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94703	IMAGE-MGC_LOAD
NCBI Gene	553106	ENTREZGENE
PANTHER	NEUROCALCIN-DELTA	UniProtKB/Swiss-Prot
	PTHR23055	UniProtKB/Swiss-Prot
Pfam	EF-hand_1	UniProtKB/Swiss-Prot
	EF-hand_7	UniProtKB/Swiss-Prot
PhenoGen	Ncald	PhenoGen
PRINTS	RECOVERIN	UniProtKB/Swiss-Prot
PROSITE	EF_HAND_1	UniProtKB/Swiss-Prot
	EF_HAND_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000042978	RatGTEx
SMART	EFh	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF47473	UniProtKB/Swiss-Prot
UniProt	A6HR47	ENTREZGENE, UniProtKB/TrEMBL
	NCALD_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-02-09	Ncald	neurocalcin delta			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message