Ccdc107 (coiled-coil domain containing 107)

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Gene: Ccdc107 (coiled-coil domain containing 107) Rattus norvegicus

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Symbol:

Ccdc107

Name:

coiled-coil domain containing 107

RGD ID:

1560252

Description:

Predicted to be located in membrane. Orthologous to human CCDC107 (coiled-coil domain containing 107); INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

coiled-coil domain-containing protein 107; LOC313496; RGD1560252; similar to hypothetical protein MGC31967

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	62,545,273 - 62,548,711 (+)	NCBI		GRCr8
mRatBN7.2	5	57,749,502 - 57,752,920 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	57,748,999 - 57,752,918 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	59,729,473 - 59,732,802 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	61,548,286 - 61,551,615 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	61,519,701 - 61,523,066 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	58,995,211 - 58,998,620 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	58,995,249 - 58,997,953 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	63,519,835 - 63,523,212 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	59,973,255 - 59,975,669 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	56,330,086 - 56,333,495 (+)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acromesomelic dysplasia, Maroteaux type (ISO)

anauxetic dysplasia (ISO)

anauxetic dysplasia 1 (ISO)

autosomal recessive distal hereditary motor neuronopathy 2 (ISO)

cartilage-hair hypoplasia (ISO)

distal arthrogryposis type 1A (ISO)

frontotemporal dementia and/or amyotrophic lateral sclerosis 6 (ISO)

galactosemia (ISO)

hyperphosphatasia with impaired intellectual development syndrome 2 (ISO)

Metaphyseal Dysplasia without Hypotrichosis (ISO)

paraplegia (ISO)

primary ciliary dyskinesia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

1,3-dinitrobenzene (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-hydroxypropanoic acid (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

chlorpyrifos (ISO)

choline (ISO)

cisplatin (ISO)

clofibrate (ISO)

copper(II) sulfate (ISO)

dexamethasone (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

ethanol (ISO)

folic acid (ISO)

glyphosate (EXP)

indometacin (ISO)

inulin (ISO)

L-methionine (ISO)

nefazodone (EXP)

nimesulide (EXP)

paracetamol (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

rac-lactic acid (ISO)

sunitinib (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548

Genomics

Comparative Map Data

Ccdc107
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	62,545,273 - 62,548,711 (+)	NCBI		GRCr8
mRatBN7.2	5	57,749,502 - 57,752,920 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	57,748,999 - 57,752,918 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	59,729,473 - 59,732,802 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	61,548,286 - 61,551,615 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	61,519,701 - 61,523,066 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	58,995,211 - 58,998,620 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	58,995,249 - 58,997,953 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	63,519,835 - 63,523,212 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	59,973,255 - 59,975,669 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	56,330,086 - 56,333,495 (+)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

CCDC107
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	35,658,292 - 35,661,511 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	35,658,290 - 35,661,511 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	35,658,289 - 35,661,508 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	35,648,311 - 35,651,184 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	9	35,591,860 - 35,594,733 (+)	NCBI		Celera
Cytogenetic Map	9	p13.3	NCBI
HuRef	9	35,613,896 - 35,617,109 (+)	NCBI		HuRef
CHM1_1	9	35,658,115 - 35,661,328 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	35,678,944 - 35,682,163 (+)	NCBI		T2T-CHM13v2.0

Ccdc107
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	43,493,365 - 43,495,921 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	43,492,900 - 43,495,921 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	43,493,340 - 43,495,921 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	43,492,900 - 43,495,921 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	43,506,269 - 43,508,792 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	43,514,497 - 43,517,020 (+)	NCBI		MGSCv36	mm8
Celera	4	43,527,417 - 43,529,940 (+)	NCBI		Celera
Cytogenetic Map	4	A5	NCBI
cM Map	4	23.04	NCBI

Ccdc107
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955472	633,405 - 640,175 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955472	636,633 - 640,198 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCDC107
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	88,925,635 - 88,929,080 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	88,931,574 - 88,934,999 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	35,510,289 - 35,513,195 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	36,312,688 - 36,315,926 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	36,312,688 - 36,315,926 (+)	Ensembl	panpan1.1		panPan2

CCDC107
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	52,194,412 - 52,196,817 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	52,194,293 - 52,196,815 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	50,762,407 - 50,764,844 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	53,259,766 - 53,262,203 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	53,259,333 - 53,262,203 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	51,804,359 - 51,806,795 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	51,787,838 - 51,790,275 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	52,489,973 - 52,492,410 (+)	NCBI		UU_Cfam_GSD_1.0

Ccdc107
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	167,109,506 - 167,112,271 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936524	3,657,170 - 3,659,821 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936524	3,657,094 - 3,659,851 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC107
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	236,380,577 - 236,383,666 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	236,380,572 - 236,383,671 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	264,105,613 - 264,108,706 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC107
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	44,941,951 - 44,944,935 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	44,939,377 - 44,944,842 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	42,046,763 - 42,049,671 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc107
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624868	5,130,938 - 5,133,871 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624868	5,129,818 - 5,133,780 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ccdc107
13 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	53
Count of miRNA genes:	50
Interacting mature miRNAs:	51
Transcripts:	ENSRNOT00000023411
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	27955440	72955440	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	33215665	78215665	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	47869062	90099692	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	18873947	74251464	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	12789751	113558310	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	43726656	129132602	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	33215665	78215665	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	33215665	78215665	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	28515489	73515489	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	27955440	72955440	Rat
7411561	Bw134	Body weight QTL 134	24	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	49463600	94463600	Rat
1641922	Alcrsp8	Alcohol response QTL 8			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	5	35189153	68564008	Rat
2303615	Vencon7	Ventilatory control QTL 7		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	5	50983895	95983895	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	28515489	73515489	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	34730116	104251008	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	9823266	99753708	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	43726656	86724018	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	729470	86724018	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	55715622	100715622	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	2282226	69540447	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
9589025	Epfw7	Epididymal fat weight QTL 7	20.66	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	5	49463600	94463600	Rat
2303574	Gluco42	Glucose level QTL 42	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	53496719	98496719	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	90450412	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	21226744	66226744	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	34944474	113558310	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	18873947	63873947	Rat

Markers in Region

RH137090

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	57,752,662 - 57,752,867 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	58,998,363 - 58,998,567	NCBI	Rnor6.0
Rnor_5.0	5	63,522,957 - 63,523,161	UniSTS	Rnor5.0
RGSC_v3.4	5	59,975,843 - 59,976,047	UniSTS	RGSC3.4
Celera	5	56,333,238 - 56,333,442	UniSTS
RH 3.4 Map	5	392.6	UniSTS
Cytogenetic Map	5	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
6	38	94	64	60	48	6	48	6	144	56	82	34	49	12

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003749929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003754010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006225271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006225272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006225273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC121204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB327616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000023411 ⟹ ENSRNOP00000023411

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	57,749,463 - 57,752,918 (+)	Ensembl
Rnor_6.0 Ensembl	5	58,995,249 - 58,997,953 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095061 ⟹ ENSRNOP00000090871

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	57,748,999 - 57,752,918 (+)	Ensembl

RefSeq Acc Id:

NM_001107957 ⟹ NP_001101427

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	62,545,350 - 62,548,711 (+)	NCBI
mRatBN7.2	5	57,749,559 - 57,752,920 (+)	NCBI

RefSeq Acc Id:

XM_006238135 ⟹ XP_006238197

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	62,545,309 - 62,548,711 (+)	NCBI
mRatBN7.2	5	57,749,502 - 57,752,802 (+)	NCBI
Rnor_6.0	5	58,995,211 - 58,998,620 (+)	NCBI
Rnor_5.0	5	63,519,835 - 63,523,212 (+)	NCBI

Sequence:

show sequence

TGAGTGATCCAGAACCGGAGTAGTTGTGGTCTCCTGCGCGTGCGCTCTACGACCGGAGGCCCAG
CGGTGGAACGCGGGGACCTCCGTGCACTATTCTGGTGGGCCAGGCATGGCGGGCGCTGGCCCGG
TGTTGAGTATTCTGGGGCTGCTGCTTGTGTCTGCTCTGTTTGGCGTCCTCGGAGAGCGCCCCAA
CCCCGATCTGGGGGCACACCCAGGTACCAAACGCCGCTCCCAGGTCGGTCCCGGGGCCACCGAA
CCTCGGCGGCAGCCGCCACCCAAGGACCAGCGCGAGCGGGCCCGGGCCGGATCGCTGTCTTTGG
GCGCGCTGTACACCGCAGCCATCGTGGCTTTTGTGCTGTTCAAGTGTTTGCAGCAGGGCCCAGA
TGAGGCTGCTGTCCCCCGAGAGGAAAAAAACAAGAAGAAATCCTCACAGTCAGAACAACAGCTG
GTGCAGCTGACCCAACAGCTGGCCCAGACAGAAGAGCACCTGAACAACCTGATGACCCAGCTGG
ATCCCCTCTTTGAGCGGGTGACTACTTTGGTTGGAACCCAGCGGGAACTTCTAAACGCAAAATT
AAAGACCATCCACCACCTTCTACAAGACTGCAAGCCTGGCATAGGGGTGGAAGCTCCAGAACCA
GAAGCCCCCATACACTTTCCGGAGGACCTGGGGAAAGAAGACCAAGAGGATGCTGGAAACAGTC
AGGCCTGGGAAGAACCCATAAACTGGAGCTCAGAGACATGGAACCTAGCTCCTTCCTGGGAAGT
GGAGCAGGGGCTGAGGAGAAGGTGGCACAAGACAAAGGGTCCAGCAGTAAATGGGGGACAAGCA
CTGAAGGTTTAGTAAAAACAGTCGTCTTGGGATTGGGGATTTAGCTCAGTGGTAGAGCACTTCC
CTAGAAACTGCAAGGCCCTGGGTTGGGTCCCCAGCTCCGAAAAAAAGAAAAAGGAGGAAAAACA
AAACAACAACAAAAAAAAAAACCAGTTGTCTCATACTAGGTCTTCCTCTGTGCTTTTCCCACTC
CCAGCTGTACACACACACACACACACACACACACACACACACACACACACACACGGTGCATAAG
CCAAGCGGGCTTCCCTTATTAGGAAAAGAGAGACTGCCTTTCAGAATGTGAATGGAGAAGACAG
ACAGTGGGAGCTACAGTTCCCTTGTGTTCCCGAGGCTACCGATGTGCCAGCCACCGAGGCTCAA
ACTCGGTTTTCTCATGGTTTAGACAGAAAGGCCTTTGCAAAAACAAAACAGCAGCACTTTATTA
AAATCCAGTGAGGAAATAAATTATAGAACTTTTACATCATAGGAGGTAGTTCAAGAGGATCTGG
AGTTTAAGGCCACCCTGGGCTACATGAAACTTTGTCTCAAGAAAAACAAAACTATGTACAGTAG
CCAGGTACGGCAGCACACACCTATACACCCAACACCTGAGAGGCTGAGGCAGGAGGCATTCAAG
TTCACTGTCAGCCTGGGTCACATAGTAAGATCCTTTCTCAAAAATAAAACAAACCATAGGCAAC
AACAAAATGGCCTCCTTTACAAAGCCGCAAATGTGATAACAGCTGGCCACAGACCACAGGAGCT
TTACAGCCCCGCCCCACCCCACCCCCAGTGGCATGGCATTAAAGGGGCTTGTTCAACTGAG

hide sequence

RefSeq Acc Id:

XM_006238136 ⟹ XP_006238198

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	62,545,299 - 62,548,711 (+)	NCBI
mRatBN7.2	5	57,749,502 - 57,752,802 (+)	NCBI
Rnor_6.0	5	58,995,211 - 58,998,620 (+)	NCBI
Rnor_5.0	5	63,519,835 - 63,523,212 (+)	NCBI

Sequence:

show sequence

TGAGTGATCCAGAACCGGAGTAGTTGTGGTCTCCTGCGCGTGCGCTCTACGACCGGAGGCCCAG
CGGTGGAACGCGGGGACCTCCGTGCACTATTCTGGTGGGCCAGGCATGGCGGGCGCTGGCCCGG
TGTTGAGTATTCTGGGGCTGCTGCTTGTGTCTGCTCTGTTTGGCGTCCTCGGAGAGCGCCCCAA
CCCCGATCTGGGGGCACACCCAGGTACCAAACGCCGCTCCCAGGTCGGTCCCGGGGCCACCGAA
CCTCGGCGGCAGCCGCCACCCAAGGACCAGCGCGAGCGGGCCCGGGCCGGATCGCTGTCTTTGG
GCGCGCTGTACACCGCAGCCATCGTGGCTTTTGTGCTGTTCAAGTGTTTGCAGGGCCCAGATGA
GGCTGCTGTCCCCCGAGAGGAAAAAAACAAGAAGAAATCCTCACAGTCAGAACAACAGCTGGTG
CAGCTGACCCAACAGCTGGCCCAGACAGAAGAGCACCTGAACAACCTGATGACCCAGCTGGATC
CCCTCTTTGAGCGGGTGACTACTTTGGTTGGAACCCAGCGGGAACTTCTAAACGCAAAATTAAA
GACCATCCACCACCTTCTACAAGACTGCAAGCCTGGCATAGGGGTGGAAGCTCCAGAACCAGAA
GCCCCCATACACTTTCCGGAGGACCTGGGGAAAGAAGACCAAGAGGATGCTGGAAACAGTCAGG
CCTGGGAAGAACCCATAAACTGGAGCTCAGAGACATGGAACCTAGCTCCTTCCTGGGAAGTGGA
GCAGGGGCTGAGGAGAAGGTGGCACAAGACAAAGGGTCCAGCAGTAAATGGGGGACAAGCACTG
AAGGTTTAGTAAAAACAGTCGTCTTGGGATTGGGGATTTAGCTCAGTGGTAGAGCACTTCCCTA
GAAACTGCAAGGCCCTGGGTTGGGTCCCCAGCTCCGAAAAAAAGAAAAAGGAGGAAAAACAAAA
CAACAACAAAAAAAAAAACCAGTTGTCTCATACTAGGTCTTCCTCTGTGCTTTTCCCACTCCCA
GCTGTACACACACACACACACACACACACACACACACACACACACACACACGGTGCATAAGCCA
AGCGGGCTTCCCTTATTAGGAAAAGAGAGACTGCCTTTCAGAATGTGAATGGAGAAGACAGACA
GTGGGAGCTACAGTTCCCTTGTGTTCCCGAGGCTACCGATGTGCCAGCCACCGAGGCTCAAACT
CGGTTTTCTCATGGTTTAGACAGAAAGGCCTTTGCAAAAACAAAACAGCAGCACTTTATTAAAA
TCCAGTGAGGAAATAAATTATAGAACTTTTACATCATAGGAGGTAGTTCAAGAGGATCTGGAGT
TTAAGGCCACCCTGGGCTACATGAAACTTTGTCTCAAGAAAAACAAAACTATGTACAGTAGCCA
GGTACGGCAGCACACACCTATACACCCAACACCTGAGAGGCTGAGGCAGGAGGCATTCAAGTTC
ACTGTCAGCCTGGGTCACATAGTAAGATCCTTTCTCAAAAATAAAACAAACCATAGGCAACAAC
AAAATGGCCTCCTTTACAAAGCCGCAAATGTGATAACAGCTGGCCACAGACCACAGGAGCTTTA
CAGCCCCGCCCCACCCCACCCCCAGTGGCATGGCATTAAAGGGGCTTGTTCAACTGAG

hide sequence

RefSeq Acc Id:

XM_006238137 ⟹ XP_006238199

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	62,545,273 - 62,548,711 (+)	NCBI
mRatBN7.2	5	57,749,502 - 57,752,802 (+)	NCBI
Rnor_6.0	5	58,995,213 - 58,998,620 (+)	NCBI
Rnor_5.0	5	63,519,835 - 63,523,212 (+)	NCBI

Sequence:

show sequence

AGTGATCCAGAACCGGAGTAGTTGTGGTCTCCTGCGCGTGCGCTCTACGACCGGAGGCCCAGCG
GTGGAACGCGGGGACCTCCGTGCACTATTCTGGTGGGCCAGGCATGGCGGGCGCTGGCCCGGTG
TTGAGTATTCTGGGGCTGCTGCTTGTGTCTGCTCTGTTTGGCGTCCTCGGAGAGCGCCCCAACC
CCGATCTGGGGGCACACCCAGAACGCCGCTCCCAGGTCGGTCCCGGGGCCACCGAACCTCGGCG
GCAGCCGCCACCCAAGGACCAGCGCGAGCGGGCCCGGGCCGGATCGCTGTCTTTGGGCGCGCTG
TACACCGCAGCCATCGTGGCTTTTGTGCTGTTCAAGTGTTTGCAGCAGGGCCCAGATGAGGCTG
CTGTCCCCCGAGAGGAAAAAAACAAGAAGAAATCCTCACAGTCAGAACAACAGCTGGTGCAGCT
GACCCAACAGCTGGCCCAGACAGAAGAGCACCTGAACAACCTGATGACCCAGCTGGATCCCCTC
TTTGAGCGGGTGACTACTTTGGTTGGAACCCAGCGGGAACTTCTAAACGCAAAATTAAAGACCA
TCCACCACCTTCTACAAGACTGCAAGCCTGGCATAGGGGTGGAAGCTCCAGAACCAGAAGCCCC
CATACACTTTCCGGAGGACCTGGGGAAAGAAGACCAAGAGGATGCTGGAAACAGTCAGGCCTGG
GAAGAACCCATAAACTGGAGCTCAGAGACATGGAACCTAGCTCCTTCCTGGGAAGTGGAGCAGG
GGCTGAGGAGAAGGTGGCACAAGACAAAGGGTCCAGCAGTAAATGGGGGACAAGCACTGAAGGT
TTAGTAAAAACAGTCGTCTTGGGATTGGGGATTTAGCTCAGTGGTAGAGCACTTCCCTAGAAAC
TGCAAGGCCCTGGGTTGGGTCCCCAGCTCCGAAAAAAAGAAAAAGGAGGAAAAACAAAACAACA
ACAAAAAAAAAAACCAGTTGTCTCATACTAGGTCTTCCTCTGTGCTTTTCCCACTCCCAGCTGT
ACACACACACACACACACACACACACACACACACACACACACACACGGTGCATAAGCCAAGCGG
GCTTCCCTTATTAGGAAAAGAGAGACTGCCTTTCAGAATGTGAATGGAGAAGACAGACAGTGGG
AGCTACAGTTCCCTTGTGTTCCCGAGGCTACCGATGTGCCAGCCACCGAGGCTCAAACTCGGTT
TTCTCATGGTTTAGACAGAAAGGCCTTTGCAAAAACAAAACAGCAGCACTTTATTAAAATCCAG
TGAGGAAATAAATTATAGAACTTTTACATCATAGGAGGTAGTTCAAGAGGATCTGGAGTTTAAG
GCCACCCTGGGCTACATGAAACTTTGTCTCAAGAAAAACAAAACTATGTACAGTAGCCAGGTAC
GGCAGCACACACCTATACACCCAACACCTGAGAGGCTGAGGCAGGAGGCATTCAAGTTCACTGT
CAGCCTGGGTCACATAGTAAGATCCTTTCTCAAAAATAAAACAAACCATAGGCAACAACAAAAT
GGCCTCCTTTACAAAGCCGCAAATGTGATAACAGCTGGCCACAGACCACAGGAGCTTTACAGCC
CCGCCCCACCCCACCCCCAGTGGCATGGCATTAAAGGGGCTTGTTCAACTGAG

hide sequence

RefSeq Acc Id:

XM_039109982 ⟹ XP_038965910

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	62,545,613 - 62,548,711 (+)	NCBI
mRatBN7.2	5	57,749,797 - 57,752,802 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101427	(Get FASTA)	NCBI Sequence Viewer
	XP_006238197	(Get FASTA)	NCBI Sequence Viewer
	XP_006238198	(Get FASTA)	NCBI Sequence Viewer
	XP_006238199	(Get FASTA)	NCBI Sequence Viewer
	XP_038965910	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL98739	(Get FASTA)	NCBI Sequence Viewer
	EDL98740	(Get FASTA)	NCBI Sequence Viewer
	EDL98741	(Get FASTA)	NCBI Sequence Viewer
	EDL98742	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000023411.7
	ENSRNOP00000090871.1

RefSeq Acc Id:	XP_006238197 ⟸ XM_006238135
- Peptide Label:	isoform X1
- UniProtKB:	D4A3Y2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGAGPVLSILGLLLVSALFGVLGERPNPDLGAHPGTKRRSQVGPGATEPRRQPPPKDQRERAR AGSLSLGALYTAAIVAFVLFKCLQQGPDEAAVPREEKNKKKSSQSEQQLVQLTQQLAQTEEHLN NLMTQLDPLFERVTTLVGTQRELLNAKLKTIHHLLQDCKPGIGVEAPEPEAPIHFPEDLGKEDQ EDAGNSQAWEEPINWSSETWNLAPSWEVEQGLRRRWHKTKGPAVNGGQALKV hide sequence

RefSeq Acc Id:

XP_006238198 ⟸ XM_006238136

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAGAGPVLSILGLLLVSALFGVLGERPNPDLGAHPGTKRRSQVGPGATEPRRQPPPKDQRERAR
AGSLSLGALYTAAIVAFVLFKCLQGPDEAAVPREEKNKKKSSQSEQQLVQLTQQLAQTEEHLNN
LMTQLDPLFERVTTLVGTQRELLNAKLKTIHHLLQDCKPGIGVEAPEPEAPIHFPEDLGKEDQE
DAGNSQAWEEPINWSSETWNLAPSWEVEQGLRRRWHKTKGPAVNGGQALKV

hide sequence

RefSeq Acc Id:	XP_006238199 ⟸ XM_006238137
- Peptide Label:	isoform X3
- UniProtKB:	A6IJ19 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGAGPVLSILGLLLVSALFGVLGERPNPDLGAHPERRSQVGPGATEPRRQPPPKDQRERARAG SLSLGALYTAAIVAFVLFKCLQQGPDEAAVPREEKNKKKSSQSEQQLVQLTQQLAQTEEHLNNL MTQLDPLFERVTTLVGTQRELLNAKLKTIHHLLQDCKPGIGVEAPEPEAPIHFPEDLGKEDQED AGNSQAWEEPINWSSETWNLAPSWEVEQGLRRRWHKTKGPAVNGGQALKV hide sequence

Ensembl Acc Id:

ENSRNOP00000023411 ⟸ ENSRNOT00000023411

RefSeq Acc Id:	NP_001101427 ⟸ NM_001107957
- Peptide Label:	precursor

RefSeq Acc Id:	XP_038965910 ⟸ XM_039109982
- Peptide Label:	isoform X4
- UniProtKB:	A6IJ21 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000090871 ⟸ ENSRNOT00000095061

Protein Domains

Resistance to inhibitors of cholinesterase protein

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A3Y2-F1-model_v2	AlphaFold	D4A3Y2	1-241	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693684

Promoter ID:

EPDNEW_R4199

Type:

initiation region

Name:

Ccdc107_1

Description:

coiled-coil domain containing 107

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	58,995,260 - 58,995,320	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560252	AgrOrtholog
BioCyc Gene	G2FUF-41509	BioCyc
Ensembl Genes	ENSRNOG00000017253	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000023411.8	UniProtKB/TrEMBL
	ENSRNOT00000095061.1	UniProtKB/TrEMBL
InterPro	CCDC107	UniProtKB/TrEMBL
	RIC3_N	UniProtKB/TrEMBL
NCBI Gene	313496	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 107	UniProtKB/TrEMBL
	PTHR37345	UniProtKB/TrEMBL
Pfam	RIC3	UniProtKB/TrEMBL
PhenoGen	Ccdc107	PhenoGen
RatGTEx	ENSRNOG00000017253	RatGTEx
UniProt	A0A8I6ADG1_RAT	UniProtKB/TrEMBL
	A6IJ19	ENTREZGENE, UniProtKB/TrEMBL
	A6IJ21	ENTREZGENE, UniProtKB/TrEMBL
	D4A3Y2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-28	Ccdc107	coiled-coil domain containing 107	RGD1560252_predicted	similar to hypothetical protein MGC31967 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1560252_predicted	similar to hypothetical protein MGC31967 (predicted)	LOC313496	similar to hypothetical protein MGC31967	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC313496	similar to hypothetical protein MGC31967			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar