Slamf7 (SLAM family member 7) - Rat Genome Database

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Gene: Slamf7 (SLAM family member 7) Rattus norvegicus
Analyze
Symbol: Slamf7
Name: SLAM family member 7
RGD ID: 1560190
Description: Predicted to enable identical protein binding activity. Predicted to be involved in T cell activation and immune response. Predicted to act upstream of or within regulation of natural killer cell activation. Predicted to be located in plasma membrane. Predicted to be active in external side of plasma membrane. Orthologous to human SLAMF7 (SLAM family member 7); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC364049; RGD1560190; similar to SLAM family member 7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81386,668,060 - 86,688,222 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1386,668,060 - 86,686,341 (-)EnsemblGRCr8
mRatBN7.21384,135,656 - 84,154,528 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1384,136,899 - 84,154,105 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1386,642,848 - 86,659,679 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01388,040,677 - 88,057,506 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01385,240,026 - 85,256,866 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01390,056,726 - 90,075,159 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1390,058,127 - 90,075,144 (-)Ensemblrn6Rnor6.0
Rnor_5.01394,678,628 - 94,696,989 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41387,637,105 - 87,653,930 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1383,765,447 - 83,782,293 (-)NCBICelera
Cytogenetic Map13q24NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
antirheumatic drug  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP)
Bufotalin  (ISO)
buta-1,3-diene  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
camptothecin  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
crocidolite asbestos  (ISO)
Dibutyl phosphate  (ISO)
dimethylarsinic acid  (ISO)
diuron  (ISO)
ethyl methanesulfonate  (ISO)
ferroheme b  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
gardiquimod  (ISO)
heme b  (ISO)
hydroxychloroquine  (ISO)
L-methionine  (ISO)
lidocaine  (EXP)
lipopolysaccharide  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylarsonic acid  (ISO)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
Nutlin-3  (ISO)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (ISO)
pentanal  (ISO)
propanal  (ISO)
protein kinase inhibitor  (ISO)
rac-lactic acid  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
sulfasalazine  (ISO)
testosterone  (EXP)
thiram  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15153464   PMID:19151721   PMID:19648922   PMID:21982860  


Genomics

Comparative Map Data
Slamf7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81386,668,060 - 86,688,222 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1386,668,060 - 86,686,341 (-)EnsemblGRCr8
mRatBN7.21384,135,656 - 84,154,528 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1384,136,899 - 84,154,105 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1386,642,848 - 86,659,679 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01388,040,677 - 88,057,506 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01385,240,026 - 85,256,866 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01390,056,726 - 90,075,159 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1390,058,127 - 90,075,144 (-)Ensemblrn6Rnor6.0
Rnor_5.01394,678,628 - 94,696,989 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41387,637,105 - 87,653,930 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1383,765,447 - 83,782,293 (-)NCBICelera
Cytogenetic Map13q24NCBI
SLAMF7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381160,739,057 - 160,754,821 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1160,739,057 - 160,754,821 (+)Ensemblhg38GRCh38
GRCh371160,708,847 - 160,724,611 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361158,975,701 - 158,991,225 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341157,522,149 - 157,537,673NCBI
Celera1133,777,800 - 133,793,320 (+)NCBICelera
Cytogenetic Map1q23.3NCBI
HuRef1132,065,275 - 132,080,797 (+)NCBIHuRef
CHM1_11162,104,443 - 162,119,967 (+)NCBICHM1_1
T2T-CHM13v2.01159,876,146 - 159,891,896 (+)NCBIT2T-CHM13v2.0
Slamf7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,458,506 - 171,480,522 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1171,459,971 - 171,480,603 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381171,632,403 - 171,653,037 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1171,632,403 - 171,653,035 (-)Ensemblmm10GRCm38
MGSCv371173,562,534 - 173,583,168 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361173,469,078 - 173,489,712 (-)NCBIMGSCv36mm8
Celera1174,487,265 - 174,507,984 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.54NCBI
Slamf7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546812,439,841 - 12,458,000 (+)Ensembl
ChiLan1.0NW_00495546812,440,157 - 12,457,445 (+)NCBIChiLan1.0ChiLan1.0
SLAMF7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2189,095,644 - 89,111,414 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1188,835,652 - 88,851,438 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01136,094,600 - 136,110,360 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11140,017,185 - 140,033,105 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1140,017,185 - 140,033,096 (+)EnsemblpanPan2panpan1.1
SLAMF7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13821,580,583 - 21,596,367 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3821,581,439 - 21,596,348 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3821,653,565 - 21,669,393 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03821,697,791 - 21,713,637 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3821,697,898 - 21,713,575 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13821,585,020 - 21,600,845 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03821,998,811 - 22,014,663 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03822,408,376 - 22,424,225 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Slamf7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050586,844,920 - 6,851,399 (+)NCBIHiC_Itri_2
SLAMF7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl489,759,872 - 89,785,692 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1489,762,080 - 89,785,748 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2497,461,897 - 97,482,128 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLAMF7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1203,204,784 - 3,219,275 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl203,202,661 - 3,219,199 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660382,243,017 - 2,259,398 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slamf7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624794520,739 - 537,952 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Slamf7
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11050,815,601 - 50,829,339 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Slamf7
109 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:31
Count of miRNA genes:31
Interacting mature miRNAs:31
Transcripts:ENSRNOT00000038006
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134863963493639634Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133721624190057603Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)1371610804109350286Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1383286150109350286Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)137161080489333251Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134874981487285480Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)137161080489333251Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137298450699745408Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)137161080489333251Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1368983334109350286Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)136242459288113509Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat

Markers in Region
D7S2869  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21384,137,874 - 84,137,979 (+)MAPPERmRatBN7.2
mRatBN7.2X58,982,131 - 58,982,236 (+)MAPPERmRatBN7.2
Rnor_6.0X63,329,541 - 63,329,645NCBIRnor6.0
Rnor_6.01390,058,945 - 90,059,049NCBIRnor6.0
Rnor_5.01394,680,847 - 94,680,951UniSTSRnor5.0
Rnor_5.0X63,924,570 - 63,924,674UniSTSRnor5.0
RGSC_v3.4X81,615,398 - 81,615,502UniSTSRGSC3.4
RGSC_v3.41387,637,923 - 87,638,027UniSTSRGSC3.4
Celera1383,766,265 - 83,766,369UniSTS
CeleraX59,415,912 - 59,416,016UniSTS
Cytogenetic Map13q24UniSTS
Cytogenetic MapXq31UniSTS
Eef1g  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21384,138,098 - 84,138,492 (+)MAPPERmRatBN7.2
Rnor_6.01390,059,169 - 90,059,562NCBIRnor6.0
Rnor_5.01394,681,071 - 94,681,464UniSTSRnor5.0
RGSC_v3.41387,638,147 - 87,638,540UniSTSRGSC3.4
RGSC_v3.4375,296,563 - 75,296,965UniSTSRGSC3.4
Celera1383,766,489 - 83,766,882UniSTS
Celera376,125,167 - 76,125,547UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map13q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 63 129 85 85 54 91 54 6 342 186 11 109 79 88 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000038006   ⟹   ENSRNOP00000038176
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1386,668,060 - 86,686,341 (-)Ensembl
mRatBN7.2 Ensembl1384,136,899 - 84,154,105 (-)Ensembl
Rnor_6.0 Ensembl1390,058,127 - 90,074,952 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000088884   ⟹   ENSRNOP00000073407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1386,668,060 - 86,686,341 (-)Ensembl
mRatBN7.2 Ensembl1384,136,899 - 84,154,105 (-)Ensembl
Rnor_6.0 Ensembl1390,061,028 - 90,075,144 (-)Ensembl
RefSeq Acc Id: NM_001412827   ⟹   NP_001399756
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81386,668,060 - 86,686,341 (-)NCBI
mRatBN7.21384,135,656 - 84,153,939 (-)NCBI
RefSeq Acc Id: XM_039090954   ⟹   XP_038946882
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81386,670,084 - 86,688,222 (-)NCBI
mRatBN7.21384,139,678 - 84,154,528 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001399756 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946882 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL94661 (Get FASTA)   NCBI Sequence Viewer  
  EDL94662 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000038176
  ENSRNOP00000038176.5
  ENSRNOP00000073407
  ENSRNOP00000073407.1
Ensembl Acc Id: ENSRNOP00000038176   ⟸   ENSRNOT00000038006
Ensembl Acc Id: ENSRNOP00000073407   ⟸   ENSRNOT00000088884
RefSeq Acc Id: XP_038946882   ⟸   XM_039090954
- Peptide Label: isoform X1
- UniProtKB: D4ABU3 (UniProtKB/TrEMBL),   A6JG06 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001399756   ⟸   NM_001412827
- Peptide Label: precursor
- UniProtKB: A0A0G2K5F6 (UniProtKB/TrEMBL),   A6JG05 (UniProtKB/TrEMBL)
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ABU3-F1-model_v2 AlphaFold D4ABU3 1-342 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699013
Promoter ID:EPDNEW_R9538
Type:multiple initiation site
Name:Slamf7_1
Description:SLAM family member 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01390,075,007 - 90,075,067EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560190 AgrOrtholog
BioCyc Gene G2FUF-17352 BioCyc
Ensembl Genes ENSRNOG00000023209 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000038006 ENTREZGENE
  ENSRNOT00000038006.7 UniProtKB/TrEMBL
  ENSRNOT00000088884 ENTREZGENE
  ENSRNOT00000088884.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro CD2/SLAM_rcpt UniProtKB/TrEMBL
  Ig-like UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
NCBI Gene 364049 ENTREZGENE
PANTHER SIGNALING LYMPHOCYTIC ACTIVATION MOLECULE UniProtKB/TrEMBL
  SLAM FAMILY MEMBER 7 UniProtKB/TrEMBL
PhenoGen Slamf7 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000023209 RatGTEx
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A0G2K5F6 ENTREZGENE, UniProtKB/TrEMBL
  A6JG05 ENTREZGENE, UniProtKB/TrEMBL
  A6JG06 ENTREZGENE, UniProtKB/TrEMBL
  D4ABU3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-28 Slamf7  SLAM family member 7  RGD1560190_predicted  similar to SLAM family member 7 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1560190_predicted  similar to SLAM family member 7 (predicted)  LOC364049  similar to SLAM family member 7  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC364049  similar to SLAM family member 7      Symbol and Name status set to provisional 70820 PROVISIONAL