Cdh24 (cadherin 24) - Rat Genome Database

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Gene: Cdh24 (cadherin 24) Rattus norvegicus
Analyze
Symbol: Cdh24
Name: cadherin 24
RGD ID: 1560161
Description: Predicted to enable several functions, including alpha-catenin binding activity; beta-catenin binding activity; and delta-catenin binding activity. Predicted to be involved in several processes, including calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules; cell-cell adhesion mediated by cadherin; and cell-cell junction organization. Predicted to act upstream of or within cell-cell adhesion. Predicted to be located in cell-cell junction. Predicted to be part of catenin complex. Predicted to be active in adherens junction. Orthologous to human CDH24 (cadherin 24); INTERACTS WITH 6-propyl-2-thiouracil; alpha-Zearalanol; amitrole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cadherin 24, type 2; cadherin-24; cadherin-like 24; LOC498515; RGD1560161; similar to Cadherin-like 24
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,061,588 - 32,071,323 (-)NCBIGRCr8
mRatBN7.21528,091,578 - 28,101,330 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,091,637 - 28,101,340 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01533,277,845 - 33,287,546 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,278,713 - 33,285,779 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01537,162,640 - 37,172,757 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41532,710,204 - 32,717,270 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1527,669,781 - 27,679,490 (-)NCBICelera
Cytogenetic Map15p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cdh24RatBrain-Lung-Thyroid Syndrome  ISOCDH24 (Homo sapiens)8554872ClinVar Annotator: match by term: Brain-lung-thyroid syndromeClinVarPMID:25741868
Cdh24Ratlysinuric protein intolerance  ISOCDH24 (Homo sapiens)8554872ClinVar Annotator: match by term: Lysinuric protein intoleranceClinVarPMID:28492532
Cdh24RatSpecific Granule Deficiency  ISOCDH24 (Homo sapiens)8554872ClinVar Annotator: match by term: Specific granule deficiencyClinVarPMID:28492532

1 to 20 of 54 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cdh24Rat1,2-dimethylhydrazine decreases expressionISOCdh24 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of CDH24 mRNACTDPMID:22206623
Cdh24Rat2-hydroxypropanoic acid increases expressionISOCDH24 (Homo sapiens)6480464Lactic Acid results in increased expression of CDH24 mRNACTDPMID:30851411
Cdh24Rat4,4'-diaminodiphenylmethane decreases expressionISOCdh24 (Mus musculus)64804644 and 4'-diaminodiphenylmethane results in decreased expression of CDH24 mRNACTDPMID:18648102
Cdh24Rat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of CDH24 mRNACTDPMID:30047161
Cdh24Ratacrolein multiple interactionsISOCDH24 (Homo sapiens)6480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of CDH24 mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in increased oxidation of CDH24 mRNACTDPMID:32699268
Cdh24Ratactinomycin D multiple interactionsISOCDH24 (Homo sapiens)6480464[Dactinomycin co-treated with nutlin 3] results in increased expression of CDH24 mRNACTDPMID:38460933
Cdh24Rataflatoxin B1 increases expressionISOCDH24 (Homo sapiens)6480464Aflatoxin B1 results in increased expression of CDH24 mRNACTDPMID:21641981
Cdh24Rataflatoxin B1 decreases expressionISOCDH24 (Homo sapiens)6480464Aflatoxin B1 results in decreased expression of CDH24 mRNACTDPMID:22100608
Cdh24Ratall-trans-retinoic acid decreases expressionISOCDH24 (Homo sapiens)6480464Tretinoin results in decreased expression of CDH24 mRNACTDPMID:23724009 and PMID:33167477
Cdh24Ratalpha-pinene multiple interactionsISOCDH24 (Homo sapiens)6480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of CDH24 mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in increased oxidation of CDH24 mRNACTDPMID:32699268
Cdh24Ratalpha-Zearalanol multiple interactionsEXP 6480464[Zeranol co-treated with perfluorooctanoic acid] results in decreased expression of CDH24 mRNACTDPMID:35163327
Cdh24Ratamitrole decreases expressionEXP 6480464Amitrole results in decreased expression of CDH24 mRNACTDPMID:30047161
Cdh24Ratamphetamine decreases expressionEXP 6480464Amphetamine results in decreased expression of CDH24 mRNACTDPMID:30779732
Cdh24Rataristolochic acid A increases expressionISOCDH24 (Homo sapiens)6480464aristolochic acid I results in increased expression of CDH24 mRNACTDPMID:33212167
Cdh24Ratarsane affects methylationISOCDH24 (Homo sapiens)6480464Arsenic affects the methylation of CDH24 geneCTDPMID:25304211
Cdh24Ratarsane multiple interactionsISOCDH24 (Homo sapiens)6480464[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of CDH24 mRNACTDPMID:39836092
Cdh24Ratarsenic atom affects methylationISOCDH24 (Homo sapiens)6480464Arsenic affects the methylation of CDH24 geneCTDPMID:25304211
Cdh24Ratarsenic atom multiple interactionsISOCDH24 (Homo sapiens)6480464[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of CDH24 mRNACTDPMID:39836092
Cdh24Ratbenzo[a]pyrene increases expressionISOCDH24 (Homo sapiens)6480464Benzo(a)pyrene results in increased expression of CDH24 mRNACTDPMID:21871943 and PMID:32234424
Cdh24Ratbenzo[a]pyrene increases methylationISOCDH24 (Homo sapiens)6480464Benzo(a)pyrene results in increased methylation of CDH24 3' UTRCTDPMID:27901495

1 to 20 of 54 rows

Biological Process
1 to 14 of 14 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cdh24Ratadherens junction organization involved_inIBAPANTHER:PTN000616280 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cdh24Ratbiological_process  ND 159840712/2008: no relevant rat dataRGD 
Cdh24Ratcalcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules involved_inIBAMGI:1095414 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cdh24Ratcell adhesion involved_inIEAInterPro:IPR0208941600115GO_REF:0000002InterProGO_REF:0000002
Cdh24Ratcell adhesion involved_inIEAUniProtKB-KW:KW-01301600115GO_REF:0000043UniProtGO_REF:0000043
Cdh24Ratcell migration involved_inIBAMGI:2685011 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cdh24Ratcell morphogenesis involved_inIBAMGI:105057 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cdh24Ratcell-cell adhesion acts_upstream_of_or_withinISOCDH24 (Homo sapiens)1624291 PMID:12734196RGDPMID:12734196
Cdh24Ratcell-cell adhesion involved_inIEAInterPro:IPR0398081600115GO_REF:0000002InterProGO_REF:0000002
Cdh24Ratcell-cell adhesion acts_upstream_of_or_withinIEAUniProtKB:Q86UP0 and ensembl:ENSP000004348211600115GO_REF:0000107EnsemblGO_REF:0000107
Cdh24Ratcell-cell adhesion involved_inISOCDH24 (Homo sapiens) more ...1624291 PMID:12734196RGDPMID:12734196
Cdh24Ratcell-cell adhesion mediated by cadherin involved_inIBAMGI:88354 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cdh24Ratcell-cell junction assembly involved_inIBAMGI:88354 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cdh24Rathomophilic cell adhesion via plasma membrane adhesion molecules involved_inIEAInterPro:IPR000233 and InterPro:IPR0021261600115GO_REF:0000002InterProGO_REF:0000002
1 to 14 of 14 rows

Cellular Component
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cdh24Ratadherens junction is_active_inIBAMGI:105057 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cdh24Ratcatenin complex part_ofIBAMGI:88354 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cdh24Ratcell-cell junction located_inISOCDH24 (Homo sapiens) more ...1624291 PMID:12734196RGDPMID:12734196
Cdh24Ratcell-cell junction located_inIEAUniProtKB:Q86UP0 and ensembl:ENSP000004348211600115GO_REF:0000107EnsemblGO_REF:0000107
Cdh24Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Cdh24Ratmembrane located_inIEAInterPro:IPR002126 and InterPro:IPR0159191600115GO_REF:0000002InterProGO_REF:0000002
Cdh24Ratplasma membrane located_inIEAInterPro:IPR0208941600115GO_REF:0000002InterProGO_REF:0000002
Cdh24Ratplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
Cdh24Ratplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
1 to 9 of 9 rows

Molecular Function
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cdh24Ratalpha-catenin binding enablesISOCDH24 (Homo sapiens) more ...1624291UniProtKB:P35221 and PMID:12734196RGDPMID:12734196
Cdh24Ratbeta-catenin binding enablesISOCDH24 (Homo sapiens) more ...1624291UniProtKB:P35222 and PMID:12734196RGDPMID:12734196
Cdh24Ratbeta-catenin binding enablesIBAMGI:88354 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cdh24Ratcadherin binding enablesIBAMGI:107433 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cdh24Ratcalcium ion binding enablesISOCDH24 (Homo sapiens)1624291 PMID:12734196RGDPMID:12734196
Cdh24Ratcalcium ion binding enablesIEAUniProtKB:Q86UP0 and ensembl:ENSP000004348211600115GO_REF:0000107EnsemblGO_REF:0000107
Cdh24Ratcalcium ion binding enablesIEAInterPro:IPR000233 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Cdh24Ratcalcium ion binding enablesIEAUniRule:UR0004134501600115GO_REF:0000104UniProtGO_REF:0000104
Cdh24Ratdelta-catenin binding enablesISOCDH24 (Homo sapiens) more ...1624291UniProtKB:O60716 and PMID:12734196RGDPMID:12734196
1 to 9 of 9 rows


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
PMID:12734196  



Cdh24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,061,588 - 32,071,323 (-)NCBIGRCr8
mRatBN7.21528,091,578 - 28,101,330 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,091,637 - 28,101,340 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01533,277,845 - 33,287,546 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,278,713 - 33,285,779 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01537,162,640 - 37,172,757 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41532,710,204 - 32,717,270 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1527,669,781 - 27,679,490 (-)NCBICelera
Cytogenetic Map15p13NCBI
CDH24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381423,047,067 - 23,057,520 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1423,047,062 - 23,057,538 (-)EnsemblGRCh38hg38GRCh38
GRCh371423,516,276 - 23,526,729 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361422,586,709 - 22,594,875 (-)NCBINCBI36Build 36hg18NCBI36
Build 341422,586,708 - 22,594,875NCBI
Celera143,378,962 - 3,389,437 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef143,633,349 - 3,643,699 (-)NCBIHuRef
CHM1_11423,514,900 - 23,525,377 (-)NCBICHM1_1
T2T-CHM13v2.01417,247,688 - 17,258,139 (-)NCBIT2T-CHM13v2.0
Cdh24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,868,688 - 54,878,853 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,868,688 - 54,878,821 (-)EnsemblGRCm39 Ensembl
GRCm381454,631,231 - 54,642,067 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,631,231 - 54,641,364 (-)EnsemblGRCm38mm10GRCm38
MGSCv371455,250,829 - 55,260,201 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361453,585,436 - 53,595,523 (-)NCBIMGSCv36mm8
Celera1452,420,388 - 52,429,748 (-)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1427.87NCBI
Cdh24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540937,249,531 - 37,256,603 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540937,249,377 - 37,257,420 (+)NCBIChiLan1.0ChiLan1.0
CDH24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21524,479,600 - 24,490,032 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11423,696,087 - 23,706,518 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0143,866,958 - 3,877,393 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11421,963,975 - 21,974,369 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1421,964,897 - 21,972,528 (-)Ensemblpanpan1.1panPan2
CDH24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.183,359,452 - 3,369,590 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl83,359,875 - 3,367,942 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha83,308,149 - 3,318,203 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.083,467,319 - 3,477,376 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl83,467,250 - 3,475,742 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,158,726 - 3,168,781 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.083,219,964 - 3,230,010 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.083,482,028 - 3,492,086 (-)NCBIUU_Cfam_GSD_1.0
Cdh24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864035,113,156 - 35,123,474 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367221,265,219 - 1,275,920 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367221,265,583 - 1,276,443 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDH24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl775,990,220 - 76,001,130 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1775,990,185 - 76,001,133 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2781,327,040 - 81,351,723 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDH24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12923,416,449 - 23,427,764 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2923,417,354 - 23,426,738 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605922,990,284 - 23,000,750 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdh24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248209,485,919 - 9,494,990 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248209,484,779 - 9,494,891 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Cdh24
49 total Variants

Predicted Target Of
Summary Value
Count of predictions:83
Count of miRNA genes:78
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000036150
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 31 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152024860037896129Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat

1 to 10 of 31 rows
AI073030  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21528,102,205 - 28,102,399 (+)MAPPERmRatBN7.2
Rnor_6.01533,288,463 - 33,288,656NCBIRnor6.0
Rnor_5.01537,173,258 - 37,173,451UniSTSRnor5.0
RGSC_v3.41532,719,954 - 32,720,147UniSTSRGSC3.4
Celera1527,680,407 - 27,680,600UniSTS
Cytogenetic Map15p13UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 49 113 91 90 59 25 59 6 217 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000036150   ⟹   ENSRNOP00000037678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1528,091,637 - 28,101,340 (-)Ensembl
Rnor_6.0 Ensembl1533,278,713 - 33,285,779 (-)Ensembl
RefSeq Acc Id: NM_001427281   ⟹   NP_001414210
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,061,588 - 32,071,283 (-)NCBI
RefSeq Acc Id: XM_039093832   ⟹   XP_038949760
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,064,005 - 32,071,323 (-)NCBI
mRatBN7.21528,093,995 - 28,101,330 (-)NCBI
Protein RefSeqs NP_001414210 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949760 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM14184 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000037678
  ENSRNOP00000037678.3
Ensembl Acc Id: ENSRNOP00000037678   ⟸   ENSRNOT00000036150
RefSeq Acc Id: XP_038949760   ⟸   XM_039093832
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001414210   ⟸   NM_001427281
- Peptide Label: precursor
- UniProtKB: A6KGV5 (UniProtKB/TrEMBL),   D3ZTI3 (UniProtKB/TrEMBL)
Cadherin

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZTI3-F1-model_v2 AlphaFold D3ZTI3 1-781 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 26 of 26 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-13787 BioCyc
Ensembl Genes ENSRNOG00000013503 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000036150 ENTREZGENE
  ENSRNOT00000036150.4 UniProtKB/TrEMBL
Gene3D-CATH 4.10.900.10 UniProtKB/TrEMBL
  Cadherins UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/TrEMBL
  Cadherin UniProtKB/TrEMBL
  Cadherin-like UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_cytoplasmic-dom UniProtKB/TrEMBL
  Catenin_binding_dom UniProtKB/TrEMBL
NCBI Gene 498515 ENTREZGENE
PANTHER CADHERIN-24 UniProtKB/TrEMBL
  PTHR24027 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_C UniProtKB/TrEMBL
PhenoGen Cdh24 PhenoGen
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013503 RatGTEx
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP Cadherin UniProtKB/TrEMBL
UniProt A6KGV5 ENTREZGENE, UniProtKB/TrEMBL
  D3ZTI3 ENTREZGENE, UniProtKB/TrEMBL
1 to 26 of 26 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-20 Cdh24  cadherin 24  Cdh24  cadherin 24, type 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-29 Cdh24  cadherin 24, type 2  Cdh24  cadherin-like 24  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-28 Cdh24  cadherin-like 24  RGD1560161_predicted  similar to Cadherin-like 24 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1560161_predicted  similar to Cadherin-like 24 (predicted)  LOC498515  similar to Cadherin-like 24  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498515  similar to Cadherin-like 24      Symbol and Name status set to provisional 70820 PROVISIONAL