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Gene: Wdr88 (WD repeat domain 88) Rattus norvegicus

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Symbol:

Wdr88

Name:

WD repeat domain 88

RGD ID:

1560122

Description:

Orthologous to human WDR88 (WD repeat domain 88); INTERACTS WITH bisphenol A; copper atom; copper(0).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical LOC292809; LOC292809; RGD1560122; WD repeat-containing protein 88

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	WDR88 (WD repeat domain 88)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Wdr88 (WD repeat domain 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Wdr88 (WD repeat domain 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	WDR88 (WD repeat domain 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	WDR88 (WD repeat domain 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Wdr88 (WD repeat domain 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	WDR88 (WD repeat domain 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	WDR88 (WD repeat domain 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Wdr88 (WD repeat domain 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Wdr88 (WD repeat domain 88)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	UNC13D (unc-13 homolog D)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	WDR88 (WD repeat domain 88)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	WDR88 (WD repeat domain 88)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Wdr88 (WD repeat domain 88)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Wdr88 (WD repeat domain 88)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	wdr88	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	97,021,259 - 97,061,646 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	97,020,943 - 97,061,790 (-)	Ensembl				GRCr8
mRatBN7.2	1	87,884,316 - 87,924,719 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	87,884,323 - 87,924,695 (-)	Ensembl				mRatBN7.2
Rnor_6.0	1	91,487,807 - 91,528,318 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	91,488,066 - 91,526,570 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	92,618,095 - 92,658,146 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	1	82,234,739 - 82,274,610 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

copper atom (EXP)

copper(0) (EXP)

fulvestrant (ISO)

GSK-J4 (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

trichloroethene (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Wdr88
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	97,021,259 - 97,061,646 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	97,020,943 - 97,061,790 (-)	Ensembl				GRCr8
mRatBN7.2	1	87,884,316 - 87,924,719 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	87,884,323 - 87,924,695 (-)	Ensembl				mRatBN7.2
Rnor_6.0	1	91,487,807 - 91,528,318 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	91,488,066 - 91,526,570 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	92,618,095 - 92,658,146 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	1	82,234,739 - 82,274,610 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

WDR88
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	33,132,114 - 33,175,799 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	33,132,090 - 33,175,799 (+)	Ensembl			hg38	GRCh38
GRCh37	19	33,623,020 - 33,666,705 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	38,314,838 - 38,358,545 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	19	30,316,626 - 30,360,287 (+)	NCBI		Celera
Cytogenetic Map	19	q13.11	NCBI
HuRef	19	30,125,344 - 30,168,768 (+)	NCBI		HuRef
CHM1_1	19	33,624,067 - 33,667,719 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	35,650,799 - 35,694,435 (+)	NCBI		T2T-CHM13v2.0

Wdr88
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	34,935,658 - 34,975,919 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	34,938,216 - 34,974,958 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	35,236,233 - 35,275,556 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	35,238,791 - 35,275,533 (-)	Ensembl			mm10	GRCm38
MGSCv37	7	36,021,252 - 36,060,410 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	34,947,655 - 34,984,151 (-)	NCBI		MGSCv36	mm8
Celera	7	30,376,336 - 30,417,399 (-)	NCBI		Celera
Cytogenetic Map	7	B2	NCBI
cM Map	7	21.21	NCBI

Wdr88
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955468	551,574 - 563,630 (+)	NCBI	ChiLan1.0	ChiLan1.0

WDR88
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	39,104,095 - 39,149,192 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	41,104,016 - 41,147,911 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	30,054,254 - 30,099,464 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	38,810,390 - 38,827,972 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	38,797,253 - 38,842,843 (+)	Ensembl			panPan2	panpan1.1

WDR88
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	118,962,602 - 119,007,836 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	118,962,605 - 119,007,759 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	118,362,799 - 118,407,991 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	119,560,796 - 119,606,385 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	119,560,799 - 119,606,552 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	119,120,811 - 119,172,258 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	118,747,334 - 118,793,162 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	119,806,760 - 119,852,290 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Wdr88
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	8,941,181 - 8,990,729 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936570	2,655,740 - 2,704,811 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

WDR88
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	42,942,193 - 42,968,436 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	42,942,231 - 42,967,828 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	38,519,654 - 38,545,485 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

WDR88
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	28,169,291 - 28,213,533 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	28,169,562 - 28,213,518 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666073	5,756,735 - 5,801,268 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Wdr88
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624794	9,932,754 - 9,954,529 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Wdr88
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	163,400,860 - 163,439,947 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Wdr88
134 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	41
Count of miRNA genes:	40
Interacting mature miRNAs:	41
Transcripts:	ENSRNOT00000056583
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	51940904	101229020	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	87889942	132889942	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
2300324	Fetw1	Fetal weight QTL 1	12.1	0.005	fetal growth trait (VT:0004201)	fetal body weight (CMO:0002080)	1	92963855	109494029	Rat
1331800	Scl25	Serum cholesterol level QTL 25	3.013		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	87785026	142582336	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	83019780	128019780	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	66404680	111404680	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	81269860	99645535	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
631519	Pia11	Pristane induced arthritis QTL 11	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	93903998	191260518	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	66400974	132889942	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	84107164	115183752	Rat
2313083	Bmd74	Bone mineral density QTL 74	4	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	91302413	136302413	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	86622262	131622262	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	58769992	103769992	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	66077886	111077886	Rat
738022	Anxrr13	Anxiety related response QTL 13	4.6	0.00039	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)	1	92683681	137683681	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	86993904	131993904	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	52891222	109116986	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	92683681	137683681	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	87558587	132558587	Rat
724529	Cm16	Cardiac mass QTL 16	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	1	96717367	160111531	Rat

Markers in Region

RH137317

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	87,925,650 - 87,925,810 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	91,529,141 - 91,529,300	NCBI	Rnor6.0
Rnor_5.0	1	92,659,111 - 92,659,270	UniSTS	Rnor5.0
RGSC_v3.4	1	87,793,241 - 87,793,400	UniSTS	RGSC3.4
Celera	1	82,275,433 - 82,275,592	UniSTS
RH 3.4 Map	1	865.7	UniSTS
Cytogenetic Map	1	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
9	4	7	84	44	43	22	22	22	6	98	42	71	21	45	21	2	2

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001432130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432131	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_197268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006223200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039100859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280923	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC114383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000056583 ⟹ ENSRNOP00000053423

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	97,020,943 - 97,061,790 (-)	Ensembl
mRatBN7.2 Ensembl	1	87,884,323 - 87,924,695 (-)	Ensembl
Rnor_6.0 Ensembl	1	91,488,066 - 91,526,570 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115036 ⟹ ENSRNOP00000077103

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	97,020,943 - 97,061,790 (-)	Ensembl
mRatBN7.2 Ensembl	1	87,884,323 - 87,924,695 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000138719 ⟹ ENSRNOP00000099888

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	97,020,943 - 97,061,790 (-)	Ensembl

RefSeq Acc Id:

XM_006228899 ⟹ XP_006228961

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	97,021,259 - 97,061,644 (-)	NCBI
mRatBN7.2	1	87,884,316 - 87,924,716 (-)	NCBI
Rnor_6.0	1	91,487,807 - 91,528,318 (-)	NCBI
Rnor_5.0	1	92,618,095 - 92,658,146 (-)	NCBI

Sequence:

show sequence

GCCTGGAAGGGAACAATCCTGCGAGATGCCTCCGAGTCAGCAAGTGGGCAGGTAAATAGAACCT
GGTGCAGCACGTGGATCCGAAGGGCTCAGCGAGGCGTGTGGGCACGTGGTGCCACCGTTCCCGC
TGCGCCCGCGGCTGGCCCGCGGCTGGCCCGGCAGGCTCCAAGATGGCCTCACCCCAAGTCCCCC
GGAAAGCCTTGGGGGACACCAGGAAAGGTTCAGGAGAGACTAGGACGGGTTCAGAAGACACTAG
GACCGGTTCAGAAGAGACTAGGACGGGTTCAGAGGAGACTGGGAGGGGTTCAGAGGAGACTAGG
ACGGGTTCAAAAGAGACTAGAAGGGGTTCAGAGGAGACTAGGACGGGTTCAGAAGAGACTAGGA
GGGGTTCAGAGGAGACTGGGAGGGGTTCAGAGGAGACTAGGATGGGTTCAAAAGAGACTAGAAG
GGGTTCAGAGGAGACTAGGACGGGTTCAGAAGAGACTAGAAGGGGTTCAGAGGAGACTAGGAGG
GGTTCAGAGGAGACTAGGATAGGTTCAAAAGAGACTGGGAGGGGTTCAGAGGAGACTAGGATAG
GTTCAAAAGAGACTGGGAGGGGTTCAGAGGAGACTAGAAGGGGTTCAGAGGAGACTAGAAGGGG
TTCAGAGGAGACTAGAAGGGGTTCAGAGGAGACTAGGAGGGGTTCAGAGGAGACTAGGATAGGT
TCAAAAGAGACTGGGAGGGGTTCAGAGGAGACTAGGATAGGTTCAAAAGAGACTGGGAGGGGTT
CAGAGGAGACTAGAAGGGGTTCAGAGGAGACTAGAAGGGGTTCAGAGGAGACTAGGACGGGTTC
AGGGGAGACTAGGACGGGTTCAGGGGAGACTAGGACGGGTTCAGGGGAGACTAGGACGGGTTCA
GGGGAGACTAGGACGGGTTCAGGGGAGACTAGGGAGGATTCTAAAGATAGCAGAATAATTATTG
ATGAGATGAGGAAAGACACAGAAGAGGTCCAGAAGAGCTCTGGCAAGACCAGGAAGAGTTATGT
TAAGGTCAAGAAGAAGAGGAGGAAGAGTACTAAACAGAAGGGGCCTGAGCCCAAGAAGTTGGAT
TTTGTCAAGGACAGTTGGCAGAAGGGGTCTCTTGAGATCAAGAAGTTGGATTTTATCGGGGACC
GTTGGCAGACGGTGTCTCTTGAGCCCAAGATGTTGGGTTTTGTCGAGGACCCTTGGCGGAAGGG
GTCTCTTGAGCCCAAGATGTTGGATTTTGTTGAAGACCCTTGGCAGAAGGGGTCTCTTGAGCCC
AAGATGTTGGATATTGTTGAGGACAGTTGGCAGAAGGACTCTTTTGAGGCCATGAAGTTGGATT
TTGCCGAATACAATTGGATTTCGATAGATAACAGGAGAGTTTCGGCAGACAGCAAGAGGAGTTC
GGTCGATAGCAAAAGGAGTTCGGTCGATAGCAAAAGGAGTTCGGTCGATAGCAAGAGGGGGTCG
ATAGACAGCAGAAAGTTTTCCGTCGATAGCAAAAGGGATCCAGTCGATAACAAGAGGGATTCAG
TCGATAGCAAGAGGTTTTCCGTCGATAGCAAGAGGTTTTCCGTCGATAGCAGAAGGGTTTCCAT
CAGCAGCAAAAGGAGTTCGATCGATAGCAAAAGGAGTTCAGTTGATAGTAGGAAAAGCTCTGGC
GGGACTTTGCTGGATTTCAGTGAAGACAGGAGGAGTTCTGGCGAGGATAGAGACATTTCCAGTC
TCGCCAGGGTGCGACACAGTAGGGTGCCATGGGCCACCCTGATGAGAGCACTGGGTCGTTTCAA
GCTGTATCTCCCACATATCCGTCGGTATTATAATCTGTCCTCCCGTGACCCCCTGGCCTTAGAC
AAGGATTTTCTTCTGCCACGTGAGAAGCACCTCAAGGCAACAGTGCAGAAGTCCTGGGGCAACC
AGCAGCCTCTCTCTAAGATCCCGTATAAAACTCTGACTGGGCATGACCAAACCGTGAGTTCCTG
CCACTTTTGTATGGACGACACAAGGTTGCTCAGTAGTTCTTATGACTGCACTGTGAAACTGTGG
GACGCTGAAGACGGAACTGTGATTTGTGACTTTGAACCACGACCCAAAGCTCCTGTTTTAGAAT
GCAGTATCACAGCTGACAACAGAAGGATCGTGGCATCATCTTATGATAAAACGGTGAGGGCTTG
GGACGTTGAGACAGGTCAGCTTCTGTGGAAAGTCAGGCACGACACCTTCGTAGTGTGCTGCAAA
TTCTCTCCCAACGGGAAGTACGTGCTGTCAGCCTTGGATGTGAATCGCGGGATCTACCTAATGG
ATCCAGAAAACATCACCTCCGTGATCCATATGAAAGCTCAACACCAAAGGTCCATCACTTCATG
CTGCTTTGACCCCGACAGCCAGAAGGTGGCTTCTGTCTCCATGGACAAGAGTATCAAGATCTGG
GACGTCACATCCCGAGCCACGCTGTTTACCATACAGGAGGCACATACCAACGCCATCTCAGACT
GCTGCTTCACCTTTAGTGGACACTTCTTGTGTACCAGCTCCTGGGACAGAACCATAAAAATCTG
GAATGTCCACACGGGGGAGTTTCGAAACCAAGGAGCCTGTGTGACTCTGATGAAGGGCCACGAG
GGCTGTGTGAGCTCCTGCTGCATTGCCAGAGACAGCTCTTTTCTCATTTCTGGTGGATTTGACA
AGACCGTGGCTATTTGGGATGTAGGAGGTGGCTACCGGAAGTTGTCATTGAAGGGCCACGAGGA
CTGGGTGACGGATGTTGCTATTAGCAACGACAAGAAGTGGATCCTCTCGGCTTCAAAGGACAAC
TCCATGAGACTATGGAATATTGAAGAAATCGACAAAATTCCTTTGGTTTCTGAGAACAAAAGGG
CCATGGGCTTAAAGGTCAGGCAGTGCAGGAATTGTGACCAGCTTTTCTCCGTCTTAGAGAGTGA
CGTTTATTCTCAACTCTCCAACACGTGTCTGTTCTGCCGGAGAGAAAAGAAGAGCTTATCATCT
AGTTCTTCGTCGTTGTCGTTATCATCACTGGAGAGGCTCTGCATATGACGCCTGCTGAGCCCTT
CGAGTGCTTGAGGACAGACCACCTGCTACACAGCCCAGCCCGCAGTGTTCTTCAGGGCTCTGTT
CTGAGCTCCCCTCCCAGAATGCACCTGCCAGACTGAGGCAAGGGCCAGGCCCCCAAATAGACTG
TCAGCATGGTCTGCCTCTCTGCCTACCGCAGAACCCTTTCAGAGGGGAGCACTGTTAGTTTTAA
TATAGAATAAATCTTGATTCCTCTGGAAAA

hide sequence

RefSeq Acc Id:

XM_039100859 ⟹ XP_038956787

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	97,021,259 - 97,061,645 (-)	NCBI
mRatBN7.2	1	87,884,316 - 87,924,716 (-)	NCBI

RefSeq Acc Id:

XM_063280923 ⟹ XP_063136993

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	97,048,729 - 97,061,646 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001419059	(Get FASTA)	NCBI Sequence Viewer
	NP_001419060	(Get FASTA)	NCBI Sequence Viewer
	XP_006228961	(Get FASTA)	NCBI Sequence Viewer
	XP_038956787	(Get FASTA)	NCBI Sequence Viewer
	XP_063136993	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000053423.3
	ENSRNOP00000077103
	ENSRNOP00000077103.1
	ENSRNOP00000099888.1

RefSeq Acc Id:

XP_006228961 ⟸ XM_006228899

- Peptide Label:

isoform X1

- Sequence:

show sequence

MASPQVPRKALGDTRKGSGETRTGSEDTRTGSEETRTGSEETGRGSEETRTGSKETRRGSEETR
TGSEETRRGSEETGRGSEETRMGSKETRRGSEETRTGSEETRRGSEETRRGSEETRIGSKETGR
GSEETRIGSKETGRGSEETRRGSEETRRGSEETRRGSEETRRGSEETRIGSKETGRGSEETRIG
SKETGRGSEETRRGSEETRRGSEETRTGSGETRTGSGETRTGSGETRTGSGETRTGSGETREDS
KDSRIIIDEMRKDTEEVQKSSGKTRKSYVKVKKKRRKSTKQKGPEPKKLDFVKDSWQKGSLEIK
KLDFIGDRWQTVSLEPKMLGFVEDPWRKGSLEPKMLDFVEDPWQKGSLEPKMLDIVEDSWQKDS
FEAMKLDFAEYNWISIDNRRVSADSKRSSVDSKRSSVDSKRSSVDSKRGSIDSRKFSVDSKRDP
VDNKRDSVDSKRFSVDSKRFSVDSRRVSISSKRSSIDSKRSSVDSRKSSGGTLLDFSEDRRSSG
EDRDISSLARVRHSRVPWATLMRALGRFKLYLPHIRRYYNLSSRDPLALDKDFLLPREKHLKAT
VQKSWGNQQPLSKIPYKTLTGHDQTVSSCHFCMDDTRLLSSSYDCTVKLWDAEDGTVICDFEPR
PKAPVLECSITADNRRIVASSYDKTVRAWDVETGQLLWKVRHDTFVVCCKFSPNGKYVLSALDV
NRGIYLMDPENITSVIHMKAQHQRSITSCCFDPDSQKVASVSMDKSIKIWDVTSRATLFTIQEA
HTNAISDCCFTFSGHFLCTSSWDRTIKIWNVHTGEFRNQGACVTLMKGHEGCVSSCCIARDSSF
LISGGFDKTVAIWDVGGGYRKLSLKGHEDWVTDVAISNDKKWILSASKDNSMRLWNIEEIDKIP
LVSENKRAMGLKVRQCRNCDQLFSVLESDVYSQLSNTCLFCRREKKSLSSSSSSLSLSSLERLC
I

hide sequence

Ensembl Acc Id:

ENSRNOP00000053423 ⟸ ENSRNOT00000056583

RefSeq Acc Id:	XP_038956787 ⟸ XM_039100859
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000077103 ⟸ ENSRNOT00000115036

RefSeq Acc Id:	XP_063136993 ⟸ XM_063280923
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000099888 ⟸ ENSRNOT00000138719

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LZ35-F1-model_v2	AlphaFold	F1LZ35	1-429	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560122	AgrOrtholog
BioCyc Gene	G2FUF-59978	BioCyc
Ensembl Genes	ENSRNOG00000037393	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000056583.3	UniProtKB/TrEMBL
	ENSRNOT00000115036	ENTREZGENE
	ENSRNOT00000115036.2	UniProtKB/TrEMBL
	ENSRNOT00000138719.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
	Methyl-accepting chemotaxis protein	UniProtKB/TrEMBL
InterPro	G-protein_beta_WD-40_rep	UniProtKB/TrEMBL
	PQQ_beta_propeller_repeat	UniProtKB/TrEMBL
	Serralysin-like_metalloprot_C	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_CS	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
KEGG Report	rno:292809	UniProtKB/TrEMBL
NCBI Gene	292809	ENTREZGENE
PANTHER	PTHR45048	UniProtKB/TrEMBL
	WD REPEAT-CONTAINING PROTEIN 88	UniProtKB/TrEMBL
Pfam	WD40	UniProtKB/TrEMBL
PhenoGen	Wdr88	PhenoGen
PRINTS	GPROTEINBRPT	UniProtKB/TrEMBL
PROSITE	WD_REPEATS_1	UniProtKB/TrEMBL
	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000037393	RatGTEx
SMART	PQQ	UniProtKB/TrEMBL
	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	SSF101967	UniProtKB/TrEMBL
	SSF50978	UniProtKB/TrEMBL
UniProt	A0A8I5Y5D0_RAT	UniProtKB/TrEMBL
	A0ABK0LEK5_RAT	UniProtKB/TrEMBL
	F1LZ35_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-28	Wdr88	WD repeat domain 88	RGD1560122_predicted	RGD1560122 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1560122_predicted	RGD1560122 (predicted)	LOC292809	hypothetical LOC292809	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC292809	hypothetical LOC292809			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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