Lmntd1 (lamin tail domain containing 1) - Rat Genome Database

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Gene: Lmntd1 (lamin tail domain containing 1) Rattus norvegicus
Analyze
Symbol: Lmntd1
Name: lamin tail domain containing 1
RGD ID: 1560077
Description: Predicted to act upstream of or within cell population proliferation. Predicted to be located in nucleus. Predicted to be active in cytoplasm and nuclear envelope. Orthologous to human LMNTD1 (lamin tail domain containing 1); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Ifltd1; intermediate filament tail domain containing 1; intermediate filament tail domain-containing protein 1; intermediate filament tail domain-containing protein 1-like; lamin tail domain-containing protein 1; lamin tail domain-containing protein 1-like; LOC100912509; LOC500362; RGD1560077; similar to RIKEN cDNA 4933403M22
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84180,085,128 - 180,319,362 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4180,085,134 - 180,329,707 (-)EnsemblGRCr8
mRatBN7.24178,354,302 - 178,588,483 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4178,354,137 - 178,588,477 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4184,664,023 - 184,694,910 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04180,448,521 - 180,479,409 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04179,068,943 - 179,099,831 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04179,658,348 - 179,905,049 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4179,651,164 - 179,904,844 (-)Ensemblrn6Rnor6.0
Rnor_5.04243,831,585 - 244,092,860 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44183,044,223 - 183,077,661 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4166,881,530 - 166,913,079 (-)NCBICelera
Cytogenetic Map4q44NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,ISO)
nuclear envelope  (IBA,ISO)
nucleus  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Lmntd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84180,085,128 - 180,319,362 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4180,085,134 - 180,329,707 (-)EnsemblGRCr8
mRatBN7.24178,354,302 - 178,588,483 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4178,354,137 - 178,588,477 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4184,664,023 - 184,694,910 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04180,448,521 - 180,479,409 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04179,068,943 - 179,099,831 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04179,658,348 - 179,905,049 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4179,651,164 - 179,904,844 (-)Ensemblrn6Rnor6.0
Rnor_5.04243,831,585 - 244,092,860 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44183,044,223 - 183,077,661 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4166,881,530 - 166,913,079 (-)NCBICelera
Cytogenetic Map4q44NCBI
LMNTD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381225,476,082 - 25,648,578 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1225,409,307 - 25,648,579 (-)Ensemblhg38GRCh38
GRCh371225,629,016 - 25,801,512 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361225,520,283 - 25,597,445 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1230,775,975 - 30,947,972 (-)NCBICelera
Cytogenetic Map12p12.1NCBI
HuRef1225,400,453 - 25,572,229 (-)NCBIHuRef
CHM1_11225,594,063 - 25,766,532 (-)NCBICHM1_1
T2T-CHM13v2.01225,349,099 - 25,521,179 (-)NCBIT2T-CHM13v2.0
Lmntd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396145,311,619 - 145,560,045 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6145,310,860 - 145,560,045 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm386145,389,314 - 145,450,767 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6145,365,134 - 145,614,319 (-)Ensemblmm10GRCm38
MGSCv376145,345,755 - 145,383,445 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366145,354,394 - 145,392,084 (-)NCBIMGSCv36mm8
Celera6148,465,890 - 148,503,902 (-)NCBICelera
Cytogenetic Map6G3NCBI
cM Map677.37NCBI
Lmntd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541320,508,574 - 20,771,188 (-)NCBIChiLan1.0ChiLan1.0
LMNTD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21071,271,915 - 71,352,040 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11271,269,308 - 71,348,436 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01260,769,889 - 60,835,765 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11263,287,943 - 63,452,305 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1263,287,954 - 63,452,305 (+)EnsemblpanPan2panpan1.1
LMNTD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12722,029,896 - 22,079,824 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2721,736,630 - 22,079,823 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2724,294,995 - 24,348,936 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02722,227,365 - 22,277,508 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2722,098,283 - 22,277,755 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12722,038,816 - 22,088,963 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02722,063,479 - 22,112,995 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02724,468,435 - 24,518,578 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Lmntd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494583,614,443 - 83,949,278 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365481,784,651 - 1,871,221 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365481,784,693 - 1,870,847 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LMNTD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl547,848,084 - 48,312,305 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1547,842,173 - 48,399,901 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2551,786,081 - 51,974,712 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LMNTD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11125,226,310 - 25,402,044 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1125,272,782 - 25,303,330 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660699,712,023 - 9,869,359 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lmntd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475213,553,556 - 13,632,818 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475213,553,599 - 13,607,870 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Lmntd1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v163,160,178 - 3,189,816 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Lmntd1
1394 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:80
Count of miRNA genes:67
Interacting mature miRNAs:76
Transcripts:ENSRNOT00000021306
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
6478720Alc23Alcohol consumption QTL 230.00509drinking behavior trait (VT:0001422)ethanol drink intake rate to body weight ratio (CMO:0001616)4155834926184426481Rat
6478785Anxrr53Anxiety related response QTL 530.01397locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4137447185182447185Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
6478757Anxrr44Anxiety related response QTL 440.01087locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4137430611182430611Rat
6478728Anxrr36Anxiety related response QTL 360.01061locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4140059299181024663Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478733Anxrr37Anxiety related response QTL 370.00095locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4157292416184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478737Anxrr38Anxiety related response QTL 380.00159locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4160623982184426481Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
6478782Anxrr52Anxiety related response QTL 520.02091locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4176806581181925369Rat

Markers in Region
BF403561  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24178,354,379 - 178,354,513 (+)MAPPERmRatBN7.2
Rnor_6.04179,651,479 - 179,651,612NCBIRnor6.0
Rnor_5.04243,831,697 - 243,831,830UniSTSRnor5.0
RGSC_v3.44183,036,293 - 183,036,426UniSTSRGSC3.4
Celera4166,873,600 - 166,873,733UniSTS
RH 3.4 Map41068.2UniSTS
Cytogenetic Map4q44UniSTS
BF397362  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24178,258,378 - 178,258,511 (+)MAPPERmRatBN7.2
Rnor_6.04179,555,478 - 179,555,610NCBIRnor6.0
Rnor_5.04243,736,266 - 243,736,398UniSTSRnor5.0
RGSC_v3.44182,938,200 - 182,938,332UniSTSRGSC3.4
Celera4166,777,897 - 166,778,029UniSTS
RH 3.4 Map41070.3UniSTS
Cytogenetic Map4q44UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
7 8 16 120 42 44 21 10 21 3 145 42 3 105 68 89 23 10 10

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001419517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000021306   ⟹   ENSRNOP00000021306
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4180,085,134 - 180,127,382 (-)Ensembl
mRatBN7.2 Ensembl4178,354,137 - 178,396,742 (-)Ensembl
Rnor_6.0 Ensembl4179,659,409 - 179,700,130 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000085386   ⟹   ENSRNOP00000073731
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4180,085,134 - 180,319,446 (-)Ensembl
mRatBN7.2 Ensembl4178,354,137 - 178,588,477 (-)Ensembl
Rnor_6.0 Ensembl4179,651,164 - 179,904,844 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089565
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl4180,141,986 - 180,153,906 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109988   ⟹   ENSRNOP00000085599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4180,085,134 - 180,329,707 (-)Ensembl
mRatBN7.2 Ensembl4178,354,137 - 178,527,301 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000167407   ⟹   ENSRNOP00000099498
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4180,085,134 - 180,152,132 (-)Ensembl
RefSeq Acc Id: NM_001419517   ⟹   NP_001406446
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84180,085,134 - 180,127,382 (-)NCBI
mRatBN7.24178,354,302 - 178,396,554 (-)NCBI
RefSeq Acc Id: XM_008763420   ⟹   XP_008761642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84180,085,128 - 180,127,115 (-)NCBI
mRatBN7.24178,354,305 - 178,396,287 (-)NCBI
Rnor_6.04179,658,348 - 179,700,135 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008763421   ⟹   XP_008761643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84180,085,128 - 180,146,213 (-)NCBI
mRatBN7.24178,354,305 - 178,409,724 (-)NCBI
Rnor_6.04179,658,348 - 179,713,670 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017592840   ⟹   XP_017448329
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84180,085,128 - 180,319,359 (-)NCBI
mRatBN7.24178,354,305 - 178,588,483 (-)NCBI
Rnor_6.04179,658,348 - 179,905,049 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017592842   ⟹   XP_017448331
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84180,085,128 - 180,127,406 (-)NCBI
mRatBN7.24178,354,305 - 178,396,518 (-)NCBI
Rnor_6.04179,658,348 - 179,701,527 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039108227   ⟹   XP_038964155
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84180,093,454 - 180,319,362 (-)NCBI
mRatBN7.24178,362,392 - 178,588,483 (-)NCBI
RefSeq Acc Id: XM_039108228   ⟹   XP_038964156
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84180,085,128 - 180,257,922 (-)NCBI
mRatBN7.24178,354,305 - 178,527,106 (-)NCBI
RefSeq Acc Id: XM_039108230   ⟹   XP_038964158
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84180,085,128 - 180,186,478 (-)NCBI
mRatBN7.24178,354,305 - 178,455,628 (-)NCBI
RefSeq Acc Id: XM_063286595   ⟹   XP_063142665
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84180,086,936 - 180,319,361 (-)NCBI
RefSeq Acc Id: XM_063286596   ⟹   XP_063142666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84180,086,936 - 180,127,409 (-)NCBI
RefSeq Acc Id: XM_063286597   ⟹   XP_063142667
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84180,093,454 - 180,127,411 (-)NCBI
RefSeq Acc Id: XM_063286598   ⟹   XP_063142668
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84180,085,128 - 180,257,922 (-)NCBI
RefSeq Acc Id: XM_063286599   ⟹   XP_063142669
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84180,085,128 - 180,319,134 (-)NCBI
RefSeq Acc Id: XP_008761643   ⟸   XM_008763421
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008761642   ⟸   XM_008763420
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017448329   ⟸   XM_017592840
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K698 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448331   ⟸   XM_017592842
- Peptide Label: isoform X6
- Sequence:
Ensembl Acc Id: ENSRNOP00000021306   ⟸   ENSRNOT00000021306
Ensembl Acc Id: ENSRNOP00000073731   ⟸   ENSRNOT00000085386
RefSeq Acc Id: XP_038964156   ⟸   XM_039108228
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038964158   ⟸   XM_039108230
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038964155   ⟸   XM_039108227
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000085599   ⟸   ENSRNOT00000109988
RefSeq Acc Id: NP_001406446   ⟸   NM_001419517
- UniProtKB: D4ABG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142669   ⟸   XM_063286599
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063142668   ⟸   XM_063286598
- Peptide Label: isoform X5
- UniProtKB: A0A8I6A477 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142665   ⟸   XM_063286595
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K698 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142666   ⟸   XM_063286596
- Peptide Label: isoform X3
- UniProtKB: D4ABG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142667   ⟸   XM_063286597
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000099498   ⟸   ENSRNOT00000167407
Protein Domains
LTD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K698-F1-model_v2 AlphaFold A0A0G2K698 1-467 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693498
Promoter ID:EPDNEW_R4023
Type:single initiation site
Name:Lmntd1_1
Description:lamin tail domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04179,700,032 - 179,700,092EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560077 AgrOrtholog
BioCyc Gene G2FUF-42454 BioCyc
Ensembl Genes ENSRNOG00000015910 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000060730 Ensembl
Ensembl Transcript ENSRNOT00000021306 ENTREZGENE
  ENSRNOT00000021306.9 UniProtKB/TrEMBL
  ENSRNOT00000085386 ENTREZGENE
  ENSRNOT00000085386.3 UniProtKB/TrEMBL
  ENSRNOT00000109988 ENTREZGENE
  ENSRNOT00000109988.2 UniProtKB/TrEMBL
  ENSRNOT00000167407 ENTREZGENE
  ENSRNOT00000167407.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.1260 UniProtKB/TrEMBL
InterPro IF_tail_C UniProtKB/TrEMBL
  Lamin_tail_dom_sf UniProtKB/TrEMBL
  LMNTD1 UniProtKB/TrEMBL
NCBI Gene 500362 ENTREZGENE
PANTHER LAMIN TAIL DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR47012 UniProtKB/TrEMBL
Pfam IF_tail UniProtKB/TrEMBL
PhenoGen Lmntd1 PhenoGen
PROSITE LTD UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015910 RatGTEx
  ENSRNOG00000060730 RatGTEx
Superfamily-SCOP SSF74853 UniProtKB/TrEMBL
UniProt A0A0G2K698 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A477 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L6F6_RAT UniProtKB/TrEMBL
  D4ABG2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Lmntd1  lamin tail domain containing 1  LOC100912509  intermediate filament tail domain-containing protein 1-like  Data merged from RGD:6486776 737654 PROVISIONAL
2014-06-06 Lmntd1  lamin tail domain containing 1  Ifltd1  intermediate filament tail domain containing 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100912509  intermediate filament tail domain-containing protein 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Ifltd1  intermediate filament tail domain containing 1   Ifltd1_predicted  intermediate filament tail domain containing 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-12-01 Ifltd1_predicted  intermediate filament tail domain containing 1 (predicted)  RGD1560077_predicted  similar to RIKEN cDNA 4933403M22 (predicted)  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1560077_predicted  similar to RIKEN cDNA 4933403M22 (predicted)  LOC500362  similar to RIKEN cDNA 4933403M22  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500362  similar to RIKEN cDNA 4933403M22      Symbol and Name status set to provisional 70820 PROVISIONAL