Pdzd11 (PDZ domain containing 11) - Rat Genome Database

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Gene: Pdzd11 (PDZ domain containing 11) Rattus norvegicus
Analyze
Symbol: Pdzd11
Name: PDZ domain containing 11
RGD ID: 1560007
Description: Predicted to enable protein-macromolecule adaptor activity. Predicted to be involved in several processes, including pore complex assembly; regulation of synaptic assembly at neuromuscular junction; and synaptic vesicle transport. Predicted to be located in cytosol. Predicted to be part of pore complex. Predicted to be active in basolateral plasma membrane and cell-cell junction. Orthologous to human PDZD11 (PDZ domain containing 11); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC302422; MGC188839; PDZ domain-containing protein 11; RGD1560007; similar to PDZ domain containing 11
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X69,758,765 - 69,761,811 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX69,759,029 - 69,761,797 (-)EnsemblGRCr8
mRatBN7.2X65,718,689 - 65,721,742 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX65,704,067 - 65,721,642 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX67,202,104 - 67,205,135 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X70,702,493 - 70,705,524 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X68,263,396 - 68,266,427 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X70,458,601 - 70,461,635 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX70,458,603 - 70,461,635 (-)Ensemblrn6Rnor6.0
Rnor_5.0X71,330,221 - 71,333,253 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X88,621,186 - 88,624,218 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX66,077,547 - 66,080,579 (-)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12763866   PMID:30463011  


Genomics

Comparative Map Data
Pdzd11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X69,758,765 - 69,761,811 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX69,759,029 - 69,761,797 (-)EnsemblGRCr8
mRatBN7.2X65,718,689 - 65,721,742 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX65,704,067 - 65,721,642 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX67,202,104 - 67,205,135 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X70,702,493 - 70,705,524 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X68,263,396 - 68,266,427 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X70,458,601 - 70,461,635 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX70,458,603 - 70,461,635 (-)Ensemblrn6Rnor6.0
Rnor_5.0X71,330,221 - 71,333,253 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X88,621,186 - 88,624,218 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX66,077,547 - 66,080,579 (-)NCBICelera
Cytogenetic MapXq22NCBI
PDZD11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X70,286,595 - 70,289,927 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX70,281,118 - 70,290,596 (-)Ensemblhg38GRCh38
GRCh37X69,506,445 - 69,509,777 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X69,422,936 - 69,426,523 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34X69,288,981 - 69,292,893NCBI
CeleraX69,859,545 - 69,863,133 (-)NCBICelera
Cytogenetic MapXq13.1NCBI
HuRefX63,327,124 - 63,330,712 (-)NCBIHuRef
CHM1_1X69,400,169 - 69,403,756 (-)NCBICHM1_1
T2T-CHM13v2.0X68,719,913 - 68,723,246 (-)NCBIT2T-CHM13v2.0
Pdzd11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X99,665,949 - 99,673,667 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX99,666,489 - 99,670,174 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38X100,622,871 - 100,625,948 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX100,622,883 - 100,626,568 (-)Ensemblmm10GRCm38
MGSCv37X97,818,245 - 97,821,246 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X96,825,625 - 96,828,626 (-)NCBIMGSCv36mm8
CeleraX87,548,933 - 87,551,934 (-)NCBICelera
Cytogenetic MapXC3NCBI
cM MapX43.72NCBI
Pdzd11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554759,841,950 - 9,845,565 (-)Ensembl
ChiLan1.0NW_0049554759,841,950 - 9,845,565 (-)NCBIChiLan1.0ChiLan1.0
PDZD11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X69,963,869 - 69,967,277 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X69,964,843 - 69,970,874 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X59,555,033 - 59,558,459 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X69,614,378 - 69,617,802 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX69,614,384 - 69,617,760 (-)EnsemblpanPan2panpan1.1
PDZD11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X54,735,579 - 54,739,084 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX54,731,840 - 54,739,010 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX45,561,570 - 45,565,073 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X55,701,731 - 55,705,234 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX55,693,204 - 55,705,151 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X53,670,698 - 53,674,201 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X55,001,762 - 55,005,265 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X54,928,683 - 54,932,186 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pdzd11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X47,426,194 - 47,429,194 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367621,188,568 - 1,194,306 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367621,188,394 - 1,191,368 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDZD11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX56,312,754 - 56,319,405 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X56,316,181 - 56,319,424 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X63,511,044 - 63,514,204 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PDZD11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X60,131,952 - 60,135,354 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX60,129,184 - 60,135,283 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660651,976,527 - 1,979,933 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pdzd11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624903257,554 - 260,979 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624903258,048 - 261,012 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Pdzd11
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X58,373,128 - 58,376,142 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pdzd11
7 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:132
Count of miRNA genes:116
Interacting mature miRNAs:124
Transcripts:ENSRNOT00000003872
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X4493088389930883Rat

Markers in Region
AI854765  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X65,718,827 - 65,718,974 (+)MAPPERmRatBN7.2
Rnor_6.0X70,458,742 - 70,458,888NCBIRnor6.0
Rnor_5.0X71,330,360 - 71,330,506UniSTSRnor5.0
RGSC_v3.4X88,621,325 - 88,621,471UniSTSRGSC3.4
CeleraX66,077,686 - 66,077,832UniSTS
Cytogenetic MapXq31UniSTS
RH141081  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X65,718,948 - 65,719,167 (+)MAPPERmRatBN7.2
Rnor_6.0X70,458,863 - 70,459,081NCBIRnor6.0
Rnor_5.0X71,330,481 - 71,330,699UniSTSRnor5.0
RGSC_v3.4X88,621,446 - 88,621,664UniSTSRGSC3.4
CeleraX66,077,807 - 66,078,025UniSTS
Cytogenetic MapXq31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006257068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006257070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC141377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC168740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000003872   ⟹   ENSRNOP00000003872
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX70,458,603 - 70,461,635 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000075862   ⟹   ENSRNOP00000068205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX70,459,697 - 70,460,860 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076028   ⟹   ENSRNOP00000067959
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX70,459,604 - 70,461,531 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076110   ⟹   ENSRNOP00000068273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX70,459,307 - 70,461,553 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076360   ⟹   ENSRNOP00000068386
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX70,459,141 - 70,461,533 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076812   ⟹   ENSRNOP00000067975
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX70,458,626 - 70,461,635 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076824   ⟹   ENSRNOP00000068076
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX70,459,107 - 70,460,536 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096963   ⟹   ENSRNOP00000090635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX65,704,067 - 65,721,642 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000122231   ⟹   ENSRNOP00000105194
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX69,759,029 - 69,761,797 (-)Ensembl
RefSeq Acc Id: NM_001106945   ⟹   NP_001100415
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X69,758,765 - 69,761,797 (-)NCBI
mRatBN7.2X65,718,689 - 65,721,721 (-)NCBI
Rnor_6.0X70,458,603 - 70,461,635 (-)NCBI
Rnor_5.0X71,330,221 - 71,333,253 (-)NCBI
RGSC_v3.4X88,621,186 - 88,624,218 (-)RGD
CeleraX66,077,547 - 66,080,579 (-)RGD
Sequence:
RefSeq Acc Id: XM_006257068   ⟹   XP_006257130
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X69,758,788 - 69,761,811 (-)NCBI
mRatBN7.2X65,718,697 - 65,721,735 (-)NCBI
Rnor_6.0X70,458,609 - 70,461,613 (-)NCBI
Rnor_5.0X71,330,221 - 71,333,253 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006257070   ⟹   XP_006257132
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X69,758,788 - 69,761,811 (-)NCBI
mRatBN7.2X65,718,697 - 65,721,735 (-)NCBI
Rnor_6.0X70,458,601 - 70,461,630 (-)NCBI
Rnor_5.0X71,330,221 - 71,333,253 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039099594   ⟹   XP_038955522
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X69,758,788 - 69,761,811 (-)NCBI
mRatBN7.2X65,718,698 - 65,721,735 (-)NCBI
RefSeq Acc Id: XM_039099595   ⟹   XP_038955523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X69,758,788 - 69,761,684 (-)NCBI
mRatBN7.2X65,718,698 - 65,721,608 (-)NCBI
RefSeq Acc Id: XM_063279895   ⟹   XP_063135965
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X69,758,788 - 69,761,811 (-)NCBI
RefSeq Acc Id: XM_063279896   ⟹   XP_063135966
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X69,758,788 - 69,761,680 (-)NCBI
RefSeq Acc Id: XM_063279897   ⟹   XP_063135967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X69,758,788 - 69,761,806 (-)NCBI
RefSeq Acc Id: XM_063279898   ⟹   XP_063135968
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X69,758,788 - 69,761,680 (-)NCBI
RefSeq Acc Id: XM_063279899   ⟹   XP_063135969
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X69,758,788 - 69,761,680 (-)NCBI
RefSeq Acc Id: NP_001100415   ⟸   NM_001106945
- UniProtKB: A6IQ85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006257132   ⟸   XM_006257070
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006257130   ⟸   XM_006257068
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSRNOP00000068205   ⟸   ENSRNOT00000075862
Ensembl Acc Id: ENSRNOP00000067975   ⟸   ENSRNOT00000076812
Ensembl Acc Id: ENSRNOP00000068076   ⟸   ENSRNOT00000076824
Ensembl Acc Id: ENSRNOP00000003872   ⟸   ENSRNOT00000003872
Ensembl Acc Id: ENSRNOP00000068386   ⟸   ENSRNOT00000076360
Ensembl Acc Id: ENSRNOP00000067959   ⟸   ENSRNOT00000076028
Ensembl Acc Id: ENSRNOP00000068273   ⟸   ENSRNOT00000076110
RefSeq Acc Id: XP_038955522   ⟸   XM_039099594
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038955523   ⟸   XM_039099595
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000090635   ⟸   ENSRNOT00000096963
RefSeq Acc Id: XP_063135965   ⟸   XM_063279895
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A9Z8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135967   ⟸   XM_063279897
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063135969   ⟸   XM_063279899
- Peptide Label: isoform X5
- UniProtKB: B5DEN7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135968   ⟸   XM_063279898
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063135966   ⟸   XM_063279896
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A9Z8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000105194   ⟸   ENSRNOT00000122231
Protein Domains
PDZ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z8K0-F1-model_v2 AlphaFold D3Z8K0 1-140 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701867
Promoter ID:EPDNEW_R12389
Type:initiation region
Name:Pdzd11_1
Description:PDZ domain containing 11
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X70,461,553 - 70,461,613EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560007 AgrOrtholog
BioCyc Gene G2FUF-2128 BioCyc
Ensembl Genes ENSRNOG00000002838 Ensembl
  ENSRNOG00000064140 Ensembl
  ENSRNOG00000084220 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000122231.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
InterPro MAM_complex_regulator UniProtKB/TrEMBL
  PDZ/DHR/GLGF UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
KEGG Report rno:302422 UniProtKB/TrEMBL
NCBI Gene 302422 ENTREZGENE
PANTHER PROTEIN LIN-7 HOMOLOG UniProtKB/TrEMBL
Pfam PDZ UniProtKB/TrEMBL
PhenoGen Pdzd11 PhenoGen
PROSITE PDZ UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002838 RatGTEx
  ENSRNOG00000064140 RatGTEx
  ENSRNOG00000084220 RatGTEx
SMART PDZ UniProtKB/TrEMBL
Superfamily-SCOP PDZ UniProtKB/TrEMBL
UniProt A0A8I6A9Z8 ENTREZGENE
  A0ABK0L5R4_RAT UniProtKB/TrEMBL
  A6IQ85 ENTREZGENE, UniProtKB/TrEMBL
  B5DEN7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Pdzd11  PDZ domain containing 11   Pdzd11_predicted  PDZ domain containing 11 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Pdzd11_predicted  PDZ domain containing 11 (predicted)  RGD1560007_predicted  similar to PDZ domain containing 11 (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1560007_predicted  similar to PDZ domain containing 11 (predicted)  LOC302422  similar to PDZ domain containing 11  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC302422  similar to PDZ domain containing 11      Symbol and Name status set to provisional 70820 PROVISIONAL