Luc7l1-ps1 (LUC7-like 1, pseudogene 1) - Rat Genome Database

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Gene: Luc7l1-ps1 (LUC7-like 1, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Luc7l1-ps1
Name: LUC7-like 1, pseudogene 1
RGD ID: 1559772
Description: INTERACTS WITH bisphenol A
Type: pseudo
RefSeq Status: INFERRED
Previously known as: hypothetical protein LOC364946; LOC364946; RGD1559772; similar to Luc7 homolog (S. cerevisiae)-like; uncharacterized protein LOC364946
Related Functional Gene: Luc7l  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81912,398,609 - 12,399,393 (+)NCBIGRCr8
mRatBN7.21912,392,817 - 12,393,601 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1912,358,198 - 12,358,982 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01913,123,425 - 13,124,209 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01912,410,391 - 12,411,175 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01913,284,229 - 13,285,013 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01924,396,802 - 24,397,582 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41912,845,023 - 12,845,783 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1912,266,152 - 12,266,936 (+)NCBICelera
Cytogenetic Map19p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Luc7l1-ps1
5 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:37
Count of miRNA genes:31
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000066411
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032318023069265Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: NM_001108893   ⟹   NP_001102363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.01924,396,770 - 24,397,530 (+)NCBI
RGSC_v3.41912,845,023 - 12,845,783 (+)RGD
Celera1912,266,124 - 12,266,884 (+)RGD
Protein Sequences
GenBank Protein EDL87369 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001102363   ⟸   NM_001108893


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-6449 BioCyc
NCBI Gene 364946 ENTREZGENE
PhenoGen Luc7l1-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Luc7l1-ps1  LUC7-like 1, pseudogene 1  RGD1559772  similar to Luc7 homolog (S. cerevisiae)-like  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1559772  similar to Luc7 homolog (S. cerevisiae)-like   RGD1559772_predicted  similar to Luc7 homolog (S. cerevisiae)-like (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1559772_predicted  similar to Luc7 homolog (S. cerevisiae)-like (predicted)  LOC364946  similar to Luc7 homolog (S. cerevisiae)-like  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC364946  similar to Luc7 homolog (S. cerevisiae)-like      Symbol and Name status set to provisional 70820 PROVISIONAL