Advanced Search (OLGA)

Gene: Sspn (sarcospan) Rattus norvegicus

Analyze

Symbol:

Sspn

Name:

sarcospan

RGD ID:

1559723

Description:

Predicted to be located in plasma membrane. Predicted to be part of dystrophin-associated glycoprotein complex. Predicted to be active in sarcolemma. Orthologous to human SSPN (sarcospan); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; acrylamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC102550089; LOC500364; RGD1559723; similar to Sspn protein; uncharacterized LOC102550089

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SSPN (sarcospan)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Sspn (sarcospan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sspn (sarcospan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SSPN (sarcospan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SSPN (sarcospan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sspn (sarcospan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SSPN (sarcospan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SSPN (sarcospan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sspn (sarcospan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Sspn (sarcospan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SSPN (sarcospan)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Sspn (sarcospan)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sspn (sarcospan (Kras oncogene-associated gene))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG1806	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG1806	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	sspn	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	180,620,762 - 180,666,893 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	180,627,848 - 180,662,284 (+)	Ensembl				GRCr8
mRatBN7.2	4	178,890,030 - 178,946,267 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	178,897,147 - 178,931,554 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	185,180,188 - 185,215,250 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	180,964,706 - 180,999,770 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	179,585,138 - 179,620,200 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	180,291,389 - 180,325,799 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	180,291,389 - 180,324,408 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	244,453,710 - 244,487,886 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	183,546,152 - 183,579,911 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	167,395,720 - 167,429,548 (+)	NCBI		Celera
Cytogenetic Map	4	q44	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atrial fibrillation (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-palmitoylglycerol (ISO)

3,4-methylenedioxymethamphetamine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (EXP)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (EXP)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

cantharidin (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

chlorpyrifos (ISO)

chrysene (ISO)

clofibrate (ISO)

clotrimazole (EXP)

Cuprizon (EXP)

DDT (EXP)

dexamethasone (ISO)

dibenz[a,h]anthracene (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

dichromium trioxide (ISO)

dioxygen (EXP,ISO)

disodium selenite (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

folic acid (ISO)

fonofos (ISO)

gentamycin (EXP)

hydralazine (ISO)

indometacin (ISO)

lead diacetate (ISO)

lead(0) (ISO)

methimazole (EXP)

N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal (ISO)

nickel atom (ISO)

oxaliplatin (EXP)

paraquat (EXP)

parathion (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

progesterone (ISO)

rotenone (EXP)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

terbufos (ISO)

testosterone enanthate (ISO)

tetrachloromethane (ISO)

tetraphene (ISO)

topotecan (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

dystrophin-associated glycoprotein complex (IEA)

membrane (IEA)

plasma membrane (IEA,ISO)

sarcolemma (IBA,ISO)

transport vesicle (IEA,ISO)

Molecular Function

protein-containing complex binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10481911	PMID:11115849

Genomics

Comparative Map Data

Sspn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	180,620,762 - 180,666,893 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	180,627,848 - 180,662,284 (+)	Ensembl				GRCr8
mRatBN7.2	4	178,890,030 - 178,946,267 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	178,897,147 - 178,931,554 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	185,180,188 - 185,215,250 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	180,964,706 - 180,999,770 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	179,585,138 - 179,620,200 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	180,291,389 - 180,325,799 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	180,291,389 - 180,324,408 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	244,453,710 - 244,487,886 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	183,546,152 - 183,579,911 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	167,395,720 - 167,429,548 (+)	NCBI		Celera
Cytogenetic Map	4	q44	NCBI

SSPN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	26,121,991 - 26,234,777 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	26,121,991 - 26,299,290 (+)	Ensembl			hg38	GRCh38
GRCh37	12	26,348,269 - 26,387,710 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	26,239,789 - 26,277,155 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	26,239,788 - 26,277,134	NCBI
Celera	12	31,494,788 - 31,534,221 (+)	NCBI		Celera
Cytogenetic Map	12	p12.1	NCBI
HuRef	12	26,118,209 - 26,157,841 (+)	NCBI		HuRef
CHM1_1	12	26,313,275 - 26,352,820 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	25,994,639 - 26,107,318 (+)	NCBI		T2T-CHM13v2.0

Sspn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	145,860,423 - 145,910,951 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	145,877,367 - 145,910,949 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm39 Ensembl	6	145,808,265 - 145,872,718 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	145,931,873 - 145,965,225 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	145,931,641 - 145,965,223 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	145,882,667 - 145,913,745 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	145,891,306 - 145,922,384 (+)	NCBI		MGSCv36	mm8
Celera	6	149,006,778 - 149,037,801 (+)	NCBI		Celera
Cytogenetic Map	6	G3	NCBI
cM Map	6	77.7	NCBI

Sspn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	21,173,960 - 21,213,410 (+)	Ensembl
ChiLan1.0	NW_004955413	21,174,242 - 21,212,813 (+)	NCBI	ChiLan1.0	ChiLan1.0

SSPN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	70,588,341 - 70,687,874 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	70,584,738 - 70,684,271 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	60,085,213 - 60,184,820 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	62,696,708 - 62,735,741 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	62,678,540 - 62,735,720 (-)	Ensembl			panPan2	panpan1.1

SSPN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	21,355,345 - 21,392,376 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	21,359,164 - 21,392,382 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	24,990,432 - 25,027,493 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	21,550,243 - 21,587,276 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	21,534,278 - 21,587,257 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	21,360,308 - 21,397,290 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	21,382,972 - 21,420,020 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	25,157,834 - 25,194,924 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sspn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	83,277,919 - 83,311,608 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936548	1,199,673 - 1,234,910 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936548	1,203,112 - 1,234,683 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SSPN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	47,548,314 - 47,609,304 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	47,566,266 - 47,609,330 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	51,171,042 - 51,214,263 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SSPN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	25,874,149 - 25,986,005 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	25,948,332 - 25,982,342 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666069	9,087,804 - 9,126,054 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sspn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	12,901,048 - 12,936,223 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624752	12,897,417 - 12,988,256 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sspn
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	3,657,945 - 3,689,952 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Sspn
522 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	272
Count of miRNA genes:	183
Interacting mature miRNAs:	226
Transcripts:	ENSRNOT00000002465
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	146370897	184426481	Rat
6478720	Alc23	Alcohol consumption QTL 23		0.00509	drinking behavior trait (VT:0001422)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	155834926	184426481	Rat
6478785	Anxrr53	Anxiety related response QTL 53		0.01397	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
1581566	Eae21	Experimental allergic encephalomyelitis QTL 21	6.2		body mass (VT:0001259)	maximum body weight loss to initial body weight ratio (CMO:0001400)	4	137447185	182447185	Rat
6478757	Anxrr44	Anxiety related response QTL 44		0.01087	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	146370897	184426481	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	137430611	182430611	Rat
6478728	Anxrr36	Anxiety related response QTL 36		0.01061	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	140059299	181024663	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
6478733	Anxrr37	Anxiety related response QTL 37		0.00095	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
10053718	Scort25	Serum corticosterone level QTL 25	2.15	0.0097	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	157292416	184426481	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
6478737	Anxrr38	Anxiety related response QTL 38		0.00159	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
2293659	Bmd35	Bone mineral density QTL 35	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	4	160623982	184426481	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	147299608	184426481	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
6478782	Anxrr52	Anxiety related response QTL 52		0.02091	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
1300109	Rf13	Renal function QTL 13	3.91		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	4	176806581	181925369	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat

Markers in Region

RH128848

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	178,931,472 - 178,931,659 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	180,325,571 - 180,325,757	NCBI	Rnor6.0
Rnor_5.0	4	244,487,805 - 244,487,991	UniSTS	Rnor5.0
RGSC_v3.4	4	183,579,830 - 183,580,016	UniSTS	RGSC3.4
Celera	4	167,429,467 - 167,429,653	UniSTS
RH 3.4 Map	4	1076.1	UniSTS
Cytogenetic Map	4	q44	UniSTS

BE102008

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	178,921,220 - 178,921,414 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	180,315,319 - 180,315,512	NCBI	Rnor6.0
Rnor_5.0	4	244,477,553 - 244,477,746	UniSTS	Rnor5.0
RGSC_v3.4	4	183,569,578 - 183,569,771	UniSTS	RGSC3.4
Celera	4	167,419,159 - 167,419,352	UniSTS
RH 3.4 Map	4	1070.3	UniSTS
Cytogenetic Map	4	q44	UniSTS

RH137524

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	178,927,337 - 178,927,477 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	180,321,436 - 180,321,575	NCBI	Rnor6.0
Rnor_5.0	4	244,483,670 - 244,483,809	UniSTS	Rnor5.0
RGSC_v3.4	4	183,575,695 - 183,575,834	UniSTS	RGSC3.4
Celera	4	167,425,286 - 167,425,425	UniSTS
Cytogenetic Map	4	q44	UniSTS

UniSTS:498280

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	178,927,450 - 178,927,904 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	180,321,549 - 180,322,002	NCBI	Rnor6.0
Rnor_5.0	4	244,483,783 - 244,484,236	UniSTS	Rnor5.0
RGSC_v3.4	4	183,575,808 - 183,576,261	UniSTS	RGSC3.4
Celera	4	167,425,399 - 167,425,854	UniSTS
Cytogenetic Map	4	q44	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	12	67	165	91	90	59	89	59	6	347	189	11	144	76	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000002465 ⟹ ENSRNOP00000002465

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	180,627,848 - 180,662,284 (+)	Ensembl
mRatBN7.2 Ensembl	4	178,897,147 - 178,931,554 (+)	Ensembl
Rnor_6.0 Ensembl	4	180,291,389 - 180,324,408 (+)	Ensembl

RefSeq Acc Id:

NM_001109255 ⟹ NP_001102725

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	180,627,882 - 180,662,289 (+)	NCBI
mRatBN7.2	4	178,897,147 - 178,931,554 (+)	NCBI
Rnor_6.0	4	180,291,389 - 180,325,652 (+)	NCBI
Rnor_5.0	4	244,453,710 - 244,487,886 (+)	NCBI
RGSC_v3.4	4	183,546,152 - 183,579,911 (+)	RGD
Celera	4	167,395,720 - 167,429,548 (+)	RGD

Sequence:

show sequence

CCCAGAGGCAGGCACCACCACGGGAACATGGGGCGAAAGCCGGGCCCGGGGGCTCAGGAGCTGG
CAGAGGAGGAGGCAAGGACCTGTTGCGGCTGCCGCTTTCCGCTGCTGCTGGCGCTGCTGCAGCT
GGCCCTGGGCATCGCGGTGACTGTGCTGGGCTTCCTCATGGCGAGCATCAGCCCCTCCCTGCTA
GTCAGAGACACTCCGTTCTGGGCTGGGATCATTGTCTGCGTGGTGGCCTACCTTGGACTGTTCA
TGCTTTGTGTCTCATACCAAGTTGACGAGAGGACGTGTGTCCAGTTTTCTATGAAGGTGTTTTA
TTTCCTGCTGAGTGCCCTCGGCCTGATGGTCTGCACGCTGGCCGTGGCCTTCGCCGCCCACCAC
TATTCCCTGCTTGCACAGTTTACCTGTGAAACCTCCCTGGATTCTTGCCAGTGCCGGCTGCCTT
CCGCGGAGCCTCTCAGCAGGGCCTTTGTTTACAGGGATGTGACTGACTGTAGCAGCATCACTGG
TACTTTCAAATTGTTCTTAGTCATCCAGATGGTTCTAAACCTGGTCTGTGGCCTGGTGTGCTTG
CTGGCTTGCTTTGTGATGTGGAAACACAGGTACCAGGTCTTTTATGTGGGTGTTGGGCTGCGCT
CCCTGATGGCTTCTGATGGCCAGCAACAAAAGGCCTAACAGGTTGGCTCCGTGGGAGACAAGCT
CAGAAACAGCACACCCACCGGCCAGCCGAGGCGAAAACCACAATTTTTTAAAGGCAAACTTTTG
ACAACAAATACCTTTTCATTCTCTAAATGTGTATTTTTAGATTTTTTTTCCCGCAGAAAACAAA
AAAAAAAAACTTATTTTTGGATCTCTATTGTACTTTAAAAAACAAAACAAAACAAAACAAAAAA
CTTTTTGTGAGGACAGGGGTGGAGAGACACGGCTCACAAGGGAAGAGGACTCACTGCTCTTGCA
AAGGACTCGAGTTCAAGTTCAGTTCCAGAGCCCAAGTTGAGTGGCTCACAGCTACCTGTATCTC
CAGTTCCAGGGACACTGGGTGCTGTGCGCATGCGCGCGCACATACGTAATTTTACAAGCCAACT
TATTTTTAACGTTCTAATGAGAAACAAGATTCAAATTGACTTGGTGAACACCAAAAGGAAAAGA
ACAACAGACAAGGGACGAATGACCTTGAGCCGGTGCTAAGCTCTGGTGCTTATTTAGCCCTACG
GCTCTCCCATCCCCGCCCTCCTCTGCCTTTGTGTCAGTCCAGTGCGATGGTGTGAACTGGCAAC
GCAGGCCATTCCCTAGACCCTAGATTCTTCTAGCTCTTTCTGCCGCCTGCCATTATCCCCTTGG
TGTCTTGAGAAAGGTCTAAGGAAAGCCGGGTCTCAGTTGAGAGGTTTTATTTTTCACAGTGGAG
ATGTCTTCAAGGTATGAAATGGCTTTTTTAAAAAACCTAGTAGAACAAGAAGGCTCAGTGATTC
TGAACACCTGGGCAGGGTGCAGCCTTCCGGTTGCCTTAGCTCTGATCCATGAGTGGGCTGCAGC
CTCGAGAGGTCTGATTCACCATAATTGAAAGGTGGTGCTGTTGTATTCTTAACGACGTAGAAAG
TTTAAAAATAATTATATTATGCCTCTAGACTGTCATCTAAAACAAATCATTAAGACTAATTTCC
AGCTAATTGTTCATTAAAATTATGCTCAGGATTCTGTTTAATGAGCTCTGGCTGTTCTTAGGCA
GCACCGCTGGTGTTAGGAAAAATTACAGCCACAAGGGAAGATGTCTGAAGATCTACTTTTCCTG
GAAGATAACCACCACAAAAAAAGAAAAGAAAAGAACACTCAGGTTTAAAACACTCTCAGAGAAA
AAAACAAGAGCATTTGTCATGGGAAATACTTCTATTAATAGCTCGTCTGTGATACATTGAGAAA
AATCTCCCCTTGACCACTAAGTACCTTTAATGGGGATTGGGAACTACGGGTGAGTCCTGTCAAA
CACATGGACTTCCTGTGAAATCCTAGTGATGATGACTTTTACAGTTGACCTAGAGACAGAATGC
CTCGAAGTCCTTGTTTGGGTGATATGTCCACAGTTAGGGCATTTAGGTTCAGTTTAGACTTAAG
TCACAGTACTGGTTAAGACAGGCTTTGCTATGTAATTGGTACTACCCAGGGCAGACATGCATCT
GTGGGTCTCAGCGAGTCCCAGGTCCCAGCTCAGCCAGGCTTGCCCCCACTCTGCCTATCCATAT
ACTTTCCTGTCACAAAATTCCCCCCTAGAGAACACATACCCTTTTGCCTTTGAGGACTTTATAT
GATGCTGATAATGGAATCAGTCCTTCATGATCCACACACCCTACCTGAAGGAAAGGGATCACCA
CTGACTCTTATTCCTGATTAACAGATGCTTAAACTTTTTGCATTCTGACTTGCTTCCCGATCAC
TCGATCACTCGATCACTCGGGTCAAGGCAGCCCATCAGAGAGGATGGTGAGTAAAATTCCATCA
GAGGAACAGGGGTGGGGCGGGGGTGGGGCAGGGGGCTGGTACATATCTTTAATCCCAGCACTTG
GAAGGTAGAAGGAGATGGATTTCTGTGAGTTCAGAGCCAGCCTGGTCTACAAAGAAAGTTTCTA
GGACAGCCAGAGCAGACAGAGAAACCTTGTCTTGAAAAAAACCAAAACCAACCAAACAAAAACA
AGGGAAAAAAAAAAAAAAAAAGGACTGATCTCAGACAAAATTGCATGAACACAGCACGAAGTTT
CCTGATACCAACCTGGGATACCTTTAGTGTTTGTTAAGAATAACCAGCTCTGGGCTCTGAAGAT
AGTTCAGTAACCTAAGTCCTTGCCATTCCAGTAAGAACTTGATCCCTTATAGAAAGGCCAGGCA
TAGTGGCGTGGAGGAAGAGAAGGCCACATCCCTGGGGCTTCCTCAACAGCCATCTCTTTTTTTT
TTTTTTTTGGTTCTTTTTTTCGGAGATGGGGGGACCGAACTCAGGGCCTTGCGCTTCCTAGGTA
AGCGCTCTACCACTGAGCTAAATCCCCAGCCCCAACAGCCATCTTTAATTTAGCATTTGAATTC
TGGGTCCATGATGAGAGAGTTTGTCTCAAGGGAAAACAAACAAACTGAAAATAACCCAGAGTGG
ATAGCTGACCTCTGGCCTCACACAGTTAAGAGGAACCAAATTCACATTGACCTGGGATAGTGTC
TATAGAAGCAGGAATGTGGTAGAGGATCCAGGATGTCACGGGCTGTCCTTTCAAAGTGAAGCTA
TCCTCCAGTCCGTTTCTGTGCACCCAGCCCGGCTGAAAGCACACACAGAATGCCTTTGTCCAAC
AAACTCAGCAGGGTTTTGTTTTTGTTTTCTCAATGAGAAAATGAAGATTCCCCGCCCAGTTAAG
TTGCGCTATGATTTGCAAACGACTCACGGGGTGGTGGGGGTGGGTGGGCATTTTAAAGGGTAGA
ATAATTTTAGCCTGCGGGTTCCTACTTTCTAACACAACCAAGAGTTGGGGTGGTTTCAGCTCAT
GATACGACGTCTGCGCAGAATGGGGGATTTTACTGTTATGATCAGATATCCTTAACTCCCCAGA
GAGGGGAAACGTTGTAAGTGAAGAGAAGGAGCAGAGCCCGATGATGGGGCCCTTCGCTGGAAGC
TTGCTATATGCTGGGATGTGTAAGGATTGGGTTGCATGAAAAACAAATGGCTTTGGGCTGGATT
TGGAGTATTTTGACGTTATGTTTTGCAAATATTGAAGCTTCAGTAAGGGCAACAGAGAAGGAGC
AGGCACACAGCTTCTCACTTAGCAAAATGTTACACTTCAAATCTGTCGCAGAGCCAGGACGGTG
ACTGTGCCTTCCAAACTGTAGAGCAGTGAGCTTTGAGCAGCTCCCCCCTCCCCCAGCCTCCTTC
AGGAGGATTAAATGAATCAAGACTTTTCCAAGAGGAGAAATGGCCAGGGCTTGGGATAGGAATA
CGGCCACCTGGGTTTACAGACTGTAACTGAGCCCACTCAACGGGTCTGCGCCTTTACGGTGACT
GCCATCTGTGGCTCCAAACTCCATCCAAATTGGTGTAGGCAGCACCTTGGAGCCGTGCCTAAAC
CGTAGCTACTCAAAAGCCCTAGAAACTGTAGTCAAGTAACAGGCATCACATGCCCCTATTTGGA
TGCAGAACTTAGATATTCTCTTTCGACCGCCTTCCAATGTGTTCCTACAGTGGAATTCCATTCT
ATATTACTTTTATCCATGTCCAAGACCTGAGGATCTCCTGATACTTCTTCACTCATGTCTCTGT
GCATTATATCTGGGGCATATTTATGAAACTGCCTTGATAAAAGCGACCCAAGGGGTGTCAGGAG
GGGCAACTCTGAAGGGGCTACTTAAAGACGATCAGAAATGAACTTGAAAGCTGTCCATCACTTG
CAAACATGAACTGTGTCTTGATATTTCCTGATGACTGTCTCTGAACTATTACCGTGTGATCACC
TCTGTATAAATATGCCACTGGATTTTACTCTTGTTAACCCAGAATGTGCTTTAGCTGTGTAGTG
TAAGTTCAGCCTATCTGACGGCCAACTGCTTAGTGTTGAAGTCACTGAAAAGAACTCACGTCTT
CTAATTTTCTTGTCTCAAGTGAGCACTGCCTCTTTCAGAGCCATGGGTCTGCATTACGGGGCTG
TAATCTCCTTTCCTGGCCTTGATCAAATCAAGAGTAGAAGATGGAGTGTTTCTATACACTTGAG
GTGGTTATTTTTAAAGGGTGTGTGTTTCCTTTCTTAATAAACTTTTCATAATCCACAAAG

hide sequence

RefSeq Acc Id:

XM_017592843 ⟹ XP_017448332

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	180,648,478 - 180,662,436 (+)	NCBI
mRatBN7.2	4	178,917,775 - 178,931,701 (+)	NCBI
Rnor_6.0	4	180,308,644 - 180,325,799 (+)	NCBI

Sequence:

show sequence

AGATAGATACATAGACAGACAGATAGATACTGTCTGCTGTCTGAAGCATCTAGGAGGGTCCTTA
TGTCTCTCAAAGACAAAGGTGAGCAGAGTGTTTAGTGGGGTTTCTCTTTGGCTCTCTCCTGTGT
TCCGCTGTACTGAGTCTCTGCCGACCACAGAGATTCTGTACAGCTGGTAGAGCTTTATTTGCCG
TATGTAGGAATAAACCAATCTCACTGGGCGAGCAGATGCTCCCATCAAAGCAGAGGCAGAAGAT
GTGGGAGCGGGTACAGGAGTAAGTCCAGCTGTCTCATGAGAACTGCGGACGGCCATGCCCCTCT
GCTCAGCATGCCTCAGTTCAGCACTCTGGCATTTGCTCTGGCAGAGTTTACTGCATGGAAATGA
CTGCATGTGGTAAACAGCTCTGGGCCGTTGTTGGACTTTGCTGCCACACCCCTGAAGACATGGT
CCAGTTTTGCAAAGGATTTTTTGCTTCGGTTGTGTGGGCGATAACCACTCCATGTTTCAGGGTG
ACTTGCCACACAGGATAATAATTCAGAGATGCTCCCAGAGCCTTCCGGAGGATGGAGGGTACAG
GCTCTGGAGTGAGGTTGTGTTTAAGTAGCAATGAAGACAGAAGGGCTCTGCCTCCAATTTAAAG
GGTTCTTACATTAGGAAGCACTAACTTGTCTCGTGGCGCCAACGCTTTTATTGTGTATACATTA
TGAATATTAAAAATTCATCTTGCAATAAATGTACGCCTAACCTTTTACATTCCAAAGTCTCAGA
GGACGAGGGGGAAGAAATATATGTAAAGATTTCCACACTGGGCTGAACACACTGTAAGTGGCCA
TCGATAACAAATCTGTTTTCACGCCTCATAAGAAAGGGCTCGATACCGTGTCCCGCCATTCTGA
TAGATTCCACTCGGGCACTCAGGGAGCTGCTGTGTTTGTGCTTAGACCTGTTCTCAGGATGTGG
CCCCAGGACCAGCAGCCTTGGGGTTCGTTAGGGATACAAATTCTGGGTCTCAACCCTAGATCTA
TTGAATCTTAAATTGTGAGGATGGCACAGCCCGTAAGATGATTCTGAACCTTCTCGGCCTTGTC
TAATGAGGAAGGGGCAAGGAGAATGAGTAGAGAAAACCCTCCAACCATGTTGACGTGTCCCCTG
CGATCCTGAAGTCTTGACTCTGTAAGCAATGTTAATGGCTCTCTTGCTGATTCGTATTATGTAT
TCTCCCGGCTCAGTATATGCTAACAGCTGTCTTGACTAAGGCCACATCATGCTGATAGACTACA
ATACATTTATCAGTTGTGGAAAATGACTCTGAGTAGTTTACCTTAGATCATGGATGCGGGTGGC
CGGCTGTAGAGATTTTCTTCAAGAAGATGCAGCAGAGAGCAGTGCCTCTGCTCTCTGTGGTGGT
CCGTTGGCTTCATGACCGTAGGCAGAGGTTAAGTTCCTCCTGTTACAATATTGATCGGATGAAA
GCCCTCTGCATCCAAGAGTTACAGAAATAGAGTCACGTTTCCAGTTTACAAGTGATCGATGGGG
CCGAGAAGGGAGGAGAGATAACGAACGGTATTTGGCAGGAGAAGGTTGTATCCCCCAATACCCC
TGTGTAGCAACACTGTCAATGACGGGAAGAGGGAAACAAAGAGGTTGAGGTAGTGAGACTGTTA
CAAGGCCAGACTATACACATCGAGAGAGGGGAATGATAATAATTCCCGTTTTTGCAGACTATCT
TGGAAAGTCATTTATACAAACATCTCACCGTGTTGGGTCTCCCTCCTGCTCACAGTTCCTTACC
AGGCACCTCTGCAGTCCATTAGGTCAAATAATCAAAGCCACCGTGTAGCAAGACCCAGGACCCC
TCCTCCCGGAAACAGACCTGACATTCAGAGACCAATCCAGCCCTACTTAGCTCTCCAGCTCACA
AGAGGCAGTGCAGGCTTGACCACATACAGACAAAAAGGTCTTTCTATAGATGGGGAGGGGGGTT
AGAAGCAAAGAACTTGTAGACACCACATATGTCTAAAATTAGATTAACGTGATTCCCTTTGCTC
CCTTCCATTCAAAGGAACACTTCAAGATTTTCTTATCAATACAGTCGGTGATCTGGTCTCTCCA
AGCGTTCGGAGACAAAGGCCCTCTTGCTTCTGGGCACTGATGTTCAGGCCCTGTGTCTTTGTGG
GTTTTATATAGTGTGGTACCAGCTGGCCCACTTGGGCCTTGGTCTGGTCTGGTAACTTCTTAAA
CACCTCTGCTAATGTCTGCCTCGTGTTCTGTGGGCTTCCTCTCATAGATATGAGGGGAGCTCTG
GCCCCAGTCCAGGAGATTCATGCATGAGCTTGCCCTTCTCTCTTTTGCCTGAAAGCCAGAGCAC
CCTGTCTTCTGTACATGCCTATACCCTGCCATCTCAGGAAGCAGGCCCTTCCTTCGGACTGGCA
GGAGAACACTGTTTCCTTTCCCTGTGGCCATAAAGCTTTCTGCTTGAGGTAGTCAATAAATATG
ATTTTTCTAGAACATCCTTGTACATGCTACCAATAAAGAGATAAAAAAATTGTTAGTTGTGCTG
TGGGTACAAACTCTCAGCCAGCTTATTAACATATGCTTAAGCCCTGTGATGACGTGATATGATG
TACCAAAGTTAAAAGAAGTACATTTGAGGTACTTTTTGTCCAAAGTGGGTAACTTGGACTTTTT
CTCCATTTTCACAAGGTTCTGTAGCCAGGCCAGTATTCCCTACAATTTTAACTGCTTCATGTAG
GTGCATGACAAACACATCCTCAACCATCTTCCTCCCTGGAGCCTCTCTGTCAGGTCAGTTCCGC
CACCTGCAACGCACGGCGGACATATTGTTCACACCTCCGCTGTACTGCAGCCTCTCTCTGGAAG
GCTGGGTCAGCCTCGGAGTGAGCCTGTGGTCTTCATCTCTCAGTCTCCCAGAGTCAGAGAACAG
TACGGCACAGACTGTGTAAGTCACTGAGTTCAGTGGTGGTCGAGGACAGGCAGTATGCTGTTGA
CCATGGCTGGACATTGCTATGCTACACTGTGCCTTGCTGGAGGTCAGGCCCAGTGAAGCAGACA
GAGTGGCAGCTAAGGAAAAGAGGCTTTTCCGTTGGGGGTGGAGCAACTGTGATTACTTTTAAGA
TGCCGGTCAGTCAGTCTCGAACTTTTGAGTGCCCGCATCTCATAACAAGAAGGAGGGAACTCTC
GGCAACTAAGATTTCTGTCCAGCAGCCTCCAGGGACAAAGACAGTTGCGTGGGGGAAACTCTTG
ATGCTGCTGACAGAAGCCGAGGAGAGAGCCCAGGCATGTGCTTCAGGATATGACAGAAGTCTGC
GTGGTGGCCTACCTTGGACTGTTCATGCTTTGTGTCTCATACCAAGTTGACGAGAGGACGTGTG
TCCAGTTTTCTATGAAGGTGTTTTATTTCCTGCTGAGTGCCCTCGGCCTGATGGTCTGCACGCT
GGCCGTGGCCTTCGCCGCCCACCACTATTCCCTGCTTGCACAGTTTACCTGTGAAACCTCCCTG
GATTCTTGCCAGTGCCGGCTGCCTTCCGCGGAGCCTCTCAGCAGGGCCTTTGTTTACAGGGATG
TGACTGACTGTAGCAGCATCACTGGTACTTTCAAATTGTTCTTAGTCATCCAGATGGTTCTAAA
CCTGGTCTGTGGCCTGGTGTGCTTGCTGGCTTGCTTTGTGATGTGGAAACACAGGTACCAGGTC
TTTTATGTGGGTGTTGGGCTGCGCTCCCTGATGGCTTCTGATGGCCAGCAACAAAAGGCCTAAC
AGGTTGGCTCCGTGGGAGACAAGCTCAGAAACAGCACACCCACCGGCCAGCCGAGGCGAAAACC
ACAATTTTTTAAAGGCAAACTTTTGACAACAAATACCTTTTCATTCTCTAAATGTGTATTTTTA
GATTTTTTTTCCCGCAGAAAACAAAAAAAAAAAACTTATTTTTGGATCTCTATTGTACTTTAAA
AAACAAAACAAAACAAAACAAAAAACTTTTTGTGAGGACAGGGGTGGAGAGACACGGCTCACAA
GGGAAGAGGACTCACTGCTCTTGCAAAGGACTCGAGTTCAAGTTCAGTTCCAGAGCCCAAGTTG
AGTGGCTCACAGCTACCTGTATCTCCAGTTCCAGGGACACTGGGTGCTGTGCGCATGCGCGCGC
ACATACGTAATTTTACAAGCCAACTTATTTTTAACGTTCTAATGAGAAACAAGATTCAAATTGA
CTTGGTGAACACCAAAAGGAAAAGAACAACAGACAAGGGACGAATGACCTTGAGCCGGTGCTAA
GCTCTGGTGCTTATTTAGCCCTACGGCTCTCCCATCCCCGCCCTCCTCTGCCTTTGTGTCAGTC
CAGTGCGATGGTGTGAACTGGCAACGCAGGCCATTCCCTAGACCCTAGATTCTTCTAGCTCTTT
CTGCCGCCTGCCATTATCCCCTTGGTGTCTTGAGAAAGGTCTAAGGAAAGCCGGGTCTCAGTTG
AGAGGTTTTATTTTTCACAGTGGAGATGTCTTCAAGGTATGAAATGGCTTTTTTAAAAAACCTA
GTAGAACAAGAAGGCTCAGTGATTCTGAACACCTGGGCAGGGTGCAGCCTTCCGGTTGCCTTAG
CTCTGATCCATGAGTGGGCTGCAGCCTCGAGAGGTCTGATTCACCATAATTGAAAGGTGGTGCT
GTTGTATTCTTAACGACGTAGAAAGTTTAAAAATAATTATATTATGCCTCTAGACTGTCATCTA
AAACAAATCATTAAGACTAATTTCCAGCTAATTGTTCATTAAAATTATGCTCAGGATTCTGTTT
AATGAGCTCTGGCTGTTCTTAGGCAGCACCGCTGGTGTTAGGAAAAATTACAGCCACAAGGGAA
GATGTCTGAAGATCTACTTTTCCTGGAAGATAACCACCACAAAAAAAGAAAAGAAAAGAACACT
CAGGTTTAAAACACTCTCAGAGAAAAAAACAAGAGCATTTGTCATGGGAAATACTTCTATTAAT
AGCTCGTCTGTGATACATTGAGAAAAATCTCCCCTTGACCACTAAGTACCTTTAATGGGGATTG
GGAACTACGGGTGAGTCCTGTCAAACACATGGACTTCCTGTGAAATCCTAGTGATGATGACTTT
TACAGTTGACCTAGAGACAGAATGCCTCGAAGTCCTTGTTTGGGTGATATGTCCACAGTTAGGG
CATTTAGGTTCAGTTTAGACTTAAGTCACAGTACTGGTTAAGACAGGCTTTGCTATGTAATTGG
TACTACCCAGGGCAGACATGCATCTGTGGGTCTCAGCGAGTCCCAGGTCCCAGCTCAGCCAGGC
TTGCCCCCACTCTGCCTATCCATATACTTTCCTGTCACAAAATTCCCCCCTAGAGAACACATAC
CCTTTTGCCTTTGAGGACTTTATATGATGCTGATAATGGAATCAGTCCTTCATGATCCACACAC
CCTACCTGAAGGAAAGGGATCACCACTGACTCTTATTCCTGATTAACAGATGCTTAAACTTTTT
GCATTCTGACTTGCTTCCCGATCACTCGATCACTCGATCACTCGGGTCAAGGCAGCCCATCAGA
GAGGATGGTGAGTAAAATTCCATCAGAGGAACAGGGGTGGGGCGGGGGTGGGGCAGGGGGCTGG
TACATATCTTTAATCCCAGCACTTGGAAGGTAGAAGGAGATGGATTTCTGTGAGTTCAGAGCCA
GCCTGGTCTACAAAGAAAGTTTCTAGGACAGCCAGAGCAGACAGAGAAACCTTGTCTTGAAAAA
AACCAAAACCAACCAAACAAAAACAAGGGAAAAAAAAAAAAAAAAAGGACTGATCTCAGACAAA
ATTGCATGAACACAGCACGAAGTTTCCTGATACCAACCTGGGATACCTTTAGTGTTTGTTAAGA
ATAACCAGCTCTGGGCTCTGAAGATAGTTCAGTAACCTAAGTCCTTGCCATTCCAGTAAGAACT
TGATCCCTTATAGAAAGGCCAGGCATAGTGGCGTGGAGGAAGAGAAGGCCACATCCCTGGGGCT
TCCTCAACAGCCATCTCTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGATGGGGGGACCGAA
CTCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCAACAGC
CATCTTTAATTTAGCATTTGAATTCTGGGTCCATGATGAGAGAGTTTGTCTCAAGGGAAAACAA
ACAAACTGAAAATAACCCAGAGTGGATAGCTGACCTCTGGCCTCACACAGTTAAGAGGAACCAA
ATTCACATTGACCTGGGATAGTGTCTATAGAAGCAGGAATGTGGTAGAGGATCCAGGATGTCAC
GGGCTGTCCTTTCAAAGTGAAGCTATCCTCCAGTCCGTTTCTGTGCACCCAGCCCGGCTGAAAG
CACACACAGAATGCCTTTGTCCAACAAACTCAGCAGGGTTTTGTTTTTGTTTTCTCAATGAGAA
AATGAAGATTCCCCGCCCAGTTAAGTTGCGCTATGATTTGCAAACGACTCACGGGGTGGTGGGG
GTGGGTGGGCATTTTAAAGGGTAGAATAATTTTAGCCTGCGGGTTCCTACTTTCTAACACAACC
AAGAGTTGGGGTGGTTTCAGCTCATGATACGACGTCTGCGCAGAATGGGGGATTTTACTGTTAT
GATCAGATATCCTTAACTCCCCAGAGAGGGGAAACGTTGTAAGTGAAGAGAAGGAGCAGAGCCC
GATGATGGGGCCCTTCGCTGGAAGCTTGCTATATGCTGGGATGTGTAAGGATTGGGTTGCATGA
AAAACAAATGGCTTTGGGCTGGATTTGGAGTATTTTGACGTTATGTTTTGCAAATATTGAAGCT
TCAGTAAGGGCAACAGAGAAGGAGCAGGCACACAGCTTCTCACTTAGCAAAATGTTACACTTCA
AATCTGTCGCAGAGCCAGGACGGTGACTGTGCCTTCCAAACTGTAGAGCAGTGAGCTTTGAGCA
GCTCCCCCCTCCCCCAGCCTCCTTCAGGAGGATTAAATGAATCAAGACTTTTCCAAGAGGAGAA
ATGGCCAGGGCTTGGGATAGGAATACGGCCACCTGGGTTTACAGACTGTAACTGAGCCCACTCA
ACGGGTCTGCGCCTTTACGGTGACTGCCATCTGTGGCTCCAAACTCCATCCAAATTGGTGTAGG
CAGCACCTTGGAGCCGTGCCTAAACCGTAGCTACTCAAAAGCCCTAGAAACTGTAGTCAAGTAA
CAGGCATCACATGCCCCTATTTGGATGCAGAACTTAGATATTCTCTTTCGACCGCCTTCCAATG
TGTTCCTACAGTGGAATTCCATTCTATATTACTTTTATCCATGTCCAAGACCTGAGGATCTCCT
GATACTTCTTCACTCATGTCTCTGTGCATTATATCTGGGGCATATTTATGAAACTGCCTTGATA
AAAGCGACCCAAGGGGTGTCAGGAGGGGCAACTCTGAAGGGGCTACTTAAAGACGATCAGAAAT
GAACTTGAAAGCTGTCCATCACTTGCAAACATGAACTGTGTCTTGATATTTCCTGATGACTGTC
TCTGAACTATTACCGTGTGATCACCTCTGTATAAATATGCCACTGGATTTTACTCTTGTTAACC
CAGAATGTGCTTTAGCTGTGTAGTGTAAGTTCAGCCTATCTGACGGCCAACTGCTTAGTGTTGA
AGTCACTGAAAAGAACTCACGTCTTCTAATTTTCTTGTCTCAAGTGAGCACTGCCTCTTTCAGA
GCCATGGGTCTGCATTACGGGGCTGTAATCTCCTTTCCTGGCCTTGATCAAATCAAGAGTAGAA
GATGGAGTGTTTCTATACACTTGAGGTGGTTATTTTTAAAGGGTGTGTGTTTCCTTTCTTAATA
AACTTTTCATAATCCACAAAGACATGGTGTTGAATACGTTTTATATTGACCAGGTGGTGTGTGT
GAACTTGTATATGTAAACTCTCTCTGGTTAGTGTTTGCTTCAGAAACACGGCTTGGAAACCTCA
GATCATTATGTTAAGTGAAATAAAGCCAGGTTCAGTAAAA

hide sequence

RefSeq Acc Id:

XM_039108232 ⟹ XP_038964160

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	180,620,762 - 180,662,436 (+)	NCBI
mRatBN7.2	4	178,890,030 - 178,931,701 (+)	NCBI

RefSeq Acc Id:

XM_039108233 ⟹ XP_038964161

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	180,627,692 - 180,666,893 (+)	NCBI
mRatBN7.2	4	178,896,955 - 178,936,171 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102725	(Get FASTA)	NCBI Sequence Viewer
	XP_017448332	(Get FASTA)	NCBI Sequence Viewer
	XP_038964160	(Get FASTA)	NCBI Sequence Viewer
	XP_038964161	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM01424	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000002465
	ENSRNOP00000002465.3

RefSeq Acc Id:

NP_001102725 ⟸ NM_001109255

- UniProtKB:

D4ABT9 (UniProtKB/TrEMBL), A6IN14 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGRKPGPGAQELAEEEARTCCGCRFPLLLALLQLALGIAVTVLGFLMASISPSLLVRDTPFWAG
IIVCVVAYLGLFMLCVSYQVDERTCVQFSMKVFYFLLSALGLMVCTLAVAFAAHHYSLLAQFTC
ETSLDSCQCRLPSAEPLSRAFVYRDVTDCSSITGTFKLFLVIQMVLNLVCGLVCLLACFVMWKH
RYQVFYVGVGLRSLMASDGQQQKA

hide sequence

RefSeq Acc Id:	XP_017448332 ⟸ XM_017592843
- Peptide Label:	isoform X1
- Sequence:	show sequence MTEVCVVAYLGLFMLCVSYQVDERTCVQFSMKVFYFLLSALGLMVCTLAVAFAAHHYSLLAQFT CETSLDSCQCRLPSAEPLSRAFVYRDVTDCSSITGTFKLFLVIQMVLNLVCGLVCLLACFVMWK HRYQVFYVGVGLRSLMASDGQQQKA hide sequence

Ensembl Acc Id:

ENSRNOP00000002465 ⟸ ENSRNOT00000002465

RefSeq Acc Id:	XP_038964160 ⟸ XM_039108232
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038964161 ⟸ XM_039108233
- Peptide Label:	isoform X3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ABT9-F1-model_v2	AlphaFold	D4ABT9	1-216	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693502

Promoter ID:

EPDNEW_R4025

Type:

multiple initiation site

Name:

Sspn_1

Description:

sarcospan

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	180,291,353 - 180,291,413	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1559723	AgrOrtholog
BioCyc Gene	G2FUF-42447	BioCyc
Ensembl Genes	ENSRNOG00000001807	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000002465	ENTREZGENE
	ENSRNOT00000002465.6	UniProtKB/TrEMBL
InterPro	CD20-like	UniProtKB/TrEMBL
	Sarcospan	UniProtKB/TrEMBL
KEGG Report	rno:500364	UniProtKB/TrEMBL
NCBI Gene	500364	ENTREZGENE
PANTHER	PTHR15260	UniProtKB/TrEMBL
	SARCOSPAN	UniProtKB/TrEMBL
Pfam	CD20	UniProtKB/TrEMBL
PhenoGen	Sspn	PhenoGen
RatGTEx	ENSRNOG00000001807	RatGTEx
UniProt	A6IN14	ENTREZGENE, UniProtKB/TrEMBL
	D4ABT9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Sspn	sarcospan	LOC102550089	uncharacterized LOC102550089	Data merged from RGD:7541453	737654	PROVISIONAL
2013-12-17	LOC102550089	uncharacterized LOC102550089			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-02-28	Sspn	sarcospan	RGD1559723_predicted	similar to Sspn protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1559723_predicted	similar to Sspn protein (predicted)	LOC500364	similar to Sspn protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500364	similar to Sspn protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - CTD