Elfn2 (extracellular leucine-rich repeat and fibronectin type III domain containing 2) - Rat Genome Database

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Gene: Elfn2 (extracellular leucine-rich repeat and fibronectin type III domain containing 2) Rattus norvegicus
Analyze
Symbol: Elfn2
Name: extracellular leucine-rich repeat and fibronectin type III domain containing 2
RGD ID: 1559693
Description: Predicted to enable signaling receptor activity. Predicted to be involved in chemical synaptic transmission and synaptic membrane adhesion. Predicted to act upstream of or within establishment of protein localization and gene expression. Predicted to be located in membrane. Predicted to be active in postsynaptic density membrane. Orthologous to human ELFN2 (extracellular leucine rich repeat and fibronectin type III domain containing 2); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Elfn2-ps1; extracellular leucine-rich repeat and fibronectin type III containing 2; extracellular leucine-rich repeat and fibronectin type III domain containing 2, pseudogene 1; LOC100910536; LOC315117; protein phosphatase 1 regulatory subunit 29-like; RGD1559693; similar to Hypothetical protein 6330514E13
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87112,101,998 - 112,153,280 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7112,074,331 - 112,153,451 (-)EnsemblGRCr8
mRatBN7.27110,220,293 - 110,272,770 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7110,225,919 - 110,272,433 (-)EnsemblmRatBN7.2
Rnor_6.07119,889,786 - 119,897,038 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7119,894,066 - 119,896,925 (-)Ensemblrn6Rnor6.0
Rnor_5.07119,878,720 - 119,885,685 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47116,631,276 - 116,633,940 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7106,562,130 - 106,566,273 (-)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19389623   PMID:22664934  


Genomics

Comparative Map Data
Elfn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87112,101,998 - 112,153,280 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7112,074,331 - 112,153,451 (-)EnsemblGRCr8
mRatBN7.27110,220,293 - 110,272,770 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7110,225,919 - 110,272,433 (-)EnsemblmRatBN7.2
Rnor_6.07119,889,786 - 119,897,038 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7119,894,066 - 119,896,925 (-)Ensemblrn6Rnor6.0
Rnor_5.07119,878,720 - 119,885,685 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47116,631,276 - 116,633,940 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7106,562,130 - 106,566,273 (-)NCBICelera
Cytogenetic Map7q34NCBI
ELFN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382237,340,644 - 37,427,479 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2237,367,960 - 37,427,479 (-)Ensemblhg38GRCh38
GRCh38.p14 Ensembl2237,339,565 - 37,427,445 (-)Ensemblhg38GRCh38
GRCh372237,736,685 - 37,823,514 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362236,093,946 - 36,153,451 (-)NCBIBuild 36Build 36hg18NCBI36
Celera2221,564,888 - 21,624,315 (-)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2220,729,948 - 20,789,650 (-)NCBIHuRef
CHM1_12237,722,852 - 37,782,271 (-)NCBICHM1_1
T2T-CHM13v2.02237,801,164 - 37,887,955 (-)NCBIT2T-CHM13v2.0
Elfn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,551,531 - 78,603,056 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1578,551,531 - 78,602,971 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381578,667,333 - 78,718,771 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1578,667,331 - 78,718,771 (-)Ensemblmm10GRCm38
MGSCv371578,500,433 - 78,548,543 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361578,497,258 - 78,545,368 (-)NCBIMGSCv36mm8
Celera1580,132,887 - 80,181,008 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.64NCBI
Elfn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541323,805,494 - 23,862,067 (-)Ensembl
ChiLan1.0NW_00495541323,805,494 - 23,862,067 (-)NCBIChiLan1.0ChiLan1.0
ELFN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22347,195,381 - 47,285,507 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12249,881,648 - 49,974,116 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02218,254,614 - 18,343,027 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12236,115,709 - 36,175,657 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2236,120,755 - 36,123,217 (-)EnsemblpanPan2panpan1.1
ELFN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11027,185,104 - 27,191,461 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1027,185,504 - 27,187,594 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1027,090,346 - 27,147,272 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01027,927,688 - 27,984,620 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1027,977,044 - 27,979,497 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11027,649,483 - 27,706,433 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01027,958,169 - 28,015,057 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01028,135,922 - 28,192,870 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Elfn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,585,652 - 10,630,998 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364923,634,974 - 3,637,436 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364923,624,400 - 3,641,118 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELFN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl510,427,019 - 10,429,478 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1510,365,767 - 10,434,351 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.257,924,967 - 8,015,087 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ELFN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11920,074,895 - 20,135,266 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1920,079,971 - 20,082,433 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666045105,691,845 - 105,753,401 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Elfn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475210,455,522 - 10,495,593 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475210,447,255 - 10,495,765 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Elfn2
209 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:132
Count of miRNA genes:101
Interacting mature miRNAs:109
Transcripts:ENSRNOT00000010609
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)796700404118618702Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
D7Rat175  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr87112,141,069 - 112,141,269 (+)Marker Load Pipeline
mRatBN7.27110,260,593 - 110,260,793 (+)MAPPERmRatBN7.2
Rnor_6.07119,928,854 - 119,929,053NCBIRnor6.0
Rnor_5.07119,917,978 - 119,918,177UniSTSRnor5.0
RGSC_v3.47116,666,022 - 116,666,221UniSTSRGSC3.4
RGSC_v3.47116,666,021 - 116,666,218RGDRGSC3.4
Celera7106,598,064 - 106,598,263UniSTS
RGSC_v3.17116,700,251 - 116,700,448RGD
RH 3.4 Map7817.6UniSTS
RH 3.4 Map7817.6RGD
SHRSP x BN Map763.58RGD
SHRSP x BN Map763.58UniSTS
Cytogenetic Map7q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
11 6 48 160 51 50 19 79 19 6 248 157 11 135 56 89 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000010609   ⟹   ENSRNOP00000010609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7112,101,475 - 112,153,451 (-)Ensembl
mRatBN7.2 Ensembl7110,225,919 - 110,272,433 (-)Ensembl
Rnor_6.0 Ensembl7119,894,066 - 119,896,925 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105973   ⟹   ENSRNOP00000096572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7112,101,475 - 112,147,240 (-)Ensembl
mRatBN7.2 Ensembl7110,225,919 - 110,272,050 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111919   ⟹   ENSRNOP00000095002
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7112,103,014 - 112,153,416 (-)Ensembl
mRatBN7.2 Ensembl7110,225,919 - 110,238,753 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000122727   ⟹   ENSRNOP00000111641
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7112,101,456 - 112,153,441 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000128086   ⟹   ENSRNOP00000105025
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7112,101,866 - 112,146,670 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000132439   ⟹   ENSRNOP00000102899
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7112,074,331 - 112,109,051 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000138455   ⟹   ENSRNOP00000110864
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7112,101,475 - 112,147,240 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000146524   ⟹   ENSRNOP00000103739
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7112,101,898 - 112,147,556 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000155960   ⟹   ENSRNOP00000102187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7112,101,940 - 112,147,191 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000167735   ⟹   ENSRNOP00000112651
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7112,101,456 - 112,153,441 (-)Ensembl
RefSeq Acc Id: XM_006242041   ⟹   XP_006242103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87112,101,998 - 112,153,280 (-)NCBI
mRatBN7.27110,220,293 - 110,272,770 (-)NCBI
Rnor_6.07119,889,786 - 119,897,038 (-)NCBI
Rnor_5.07119,878,720 - 119,885,685 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039080276   ⟹   XP_038936204
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87112,101,998 - 112,139,588 (-)NCBI
mRatBN7.27110,220,293 - 110,260,224 (-)NCBI
RefSeq Acc Id: XM_039080277   ⟹   XP_038936205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87112,101,998 - 112,145,920 (-)NCBI
mRatBN7.27110,220,293 - 110,265,064 (-)NCBI
RefSeq Acc Id: XM_039080278   ⟹   XP_038936206
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87112,101,998 - 112,152,701 (-)NCBI
mRatBN7.27110,220,293 - 110,272,084 (-)NCBI
RefSeq Acc Id: XM_063264450   ⟹   XP_063120520
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87112,101,998 - 112,116,712 (-)NCBI
RefSeq Acc Id: XP_006242103   ⟸   XM_006242041
- UniProtKB: A6HSL8 (UniProtKB/TrEMBL),   D3ZH36 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000010609   ⟸   ENSRNOT00000010609
RefSeq Acc Id: XP_038936206   ⟸   XM_039080278
RefSeq Acc Id: XP_038936205   ⟸   XM_039080277
- UniProtKB: A6HSL8 (UniProtKB/TrEMBL),   D3ZH36 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936204   ⟸   XM_039080276
- UniProtKB: A6HSL8 (UniProtKB/TrEMBL),   D3ZH36 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000095002   ⟸   ENSRNOT00000111919
Ensembl Acc Id: ENSRNOP00000096572   ⟸   ENSRNOT00000105973
RefSeq Acc Id: XP_063120520   ⟸   XM_063264450
- UniProtKB: A6HSL8 (UniProtKB/TrEMBL),   D3ZH36 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000102187   ⟸   ENSRNOT00000155960
Ensembl Acc Id: ENSRNOP00000103739   ⟸   ENSRNOT00000146524
Ensembl Acc Id: ENSRNOP00000110864   ⟸   ENSRNOT00000138455
Ensembl Acc Id: ENSRNOP00000111641   ⟸   ENSRNOT00000122727
Ensembl Acc Id: ENSRNOP00000102899   ⟸   ENSRNOT00000132439
Ensembl Acc Id: ENSRNOP00000112651   ⟸   ENSRNOT00000167735
Ensembl Acc Id: ENSRNOP00000105025   ⟸   ENSRNOT00000128086
Protein Domains
ELFN1/ELFN2 fibronectin type-III

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZH36-F1-model_v2 AlphaFold D3ZH36 1-820 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559693 AgrOrtholog
BioCyc Gene G2FUF-32802 BioCyc
Ensembl Genes ENSRNOG00000007934 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010609 ENTREZGENE
  ENSRNOT00000010609.6 UniProtKB/TrEMBL
  ENSRNOT00000105973 ENTREZGENE
  ENSRNOT00000105973.2 UniProtKB/TrEMBL
  ENSRNOT00000111919.2 UniProtKB/TrEMBL
  ENSRNOT00000122727.1 UniProtKB/TrEMBL
  ENSRNOT00000128086.1 UniProtKB/TrEMBL
  ENSRNOT00000132439.1 UniProtKB/TrEMBL
  ENSRNOT00000138455.1 UniProtKB/TrEMBL
  ENSRNOT00000146524 ENTREZGENE
  ENSRNOT00000146524.1 UniProtKB/TrEMBL
  ENSRNOT00000155960.1 UniProtKB/TrEMBL
  ENSRNOT00000167735 ENTREZGENE
  ENSRNOT00000167735.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro ELFN_Fn3 UniProtKB/TrEMBL
  L_dom-like UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_TM_domain-containing UniProtKB/TrEMBL
KEGG Report rno:100910536 UniProtKB/TrEMBL
NCBI Gene Elfn2 ENTREZGENE
PANTHER ANTIGEN BSP, PUTATIVE-RELATED UniProtKB/TrEMBL
  LRRCT DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam ELFN_Fn3 UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
PhenoGen Elfn2 PhenoGen
PROSITE LRR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000007934 RatGTEx
SMART LRR_TYP UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A6HSL8 ENTREZGENE, UniProtKB/TrEMBL
  D3ZH36 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-07-08 Elfn2-ps1  extracellular leucine-rich repeat and fibronectin type III domain containing 2, pseudogene 1  LOC100910536  protein phosphatase 1 regulatory subunit 29-like  Data merged from RGD:6497896 737654 APPROVED
2014-07-08 Elfn2  extracellular leucine-rich repeat and fibronectin type III domain containing 2  Elfn2-ps1  extracellular leucine-rich repeat and fibronectin type III domain containing 2, pseudogene 1  Name and Symbol changed 629549 APPROVED
2014-07-08 Elfn2-ps1  extracellular leucine-rich repeat and fibronectin type III domain containing 2, pseudogene 1  Elfn2-ps1  extracellular leucine-rich repeat and fibronectin type III domain containing 2, pseudogene 1  Type changed (type changed from [null] to [protein-coding]) 629549 APPROVED
2012-07-05 LOC100910536  protein phosphatase 1 regulatory subunit 29-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2011-06-08 Elfn2-ps1  extracellular leucine-rich repeat and fibronectin type III domain containing 2, pseudogene 1  Elfn2  extracellular leucine-rich repeat and fibronectin type III domain containing 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-10 Elfn2  extracellular leucine-rich repeat and fibronectin type III domain containing 2  Elfn2  extracellular leucine-rich repeat and fibronectin type III containing 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-28 Elfn2  extracellular leucine-rich repeat and fibronectin type III containing 2  RGD1559693_predicted  similar to Hypothetical protein 6330514E13 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1559693_predicted  similar to Hypothetical protein 6330514E13 (predicted)  LOC315117  similar to Hypothetical protein 6330514E13  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC315117  similar to Hypothetical protein 6330514E13      Symbol and Name status set to provisional 70820 PROVISIONAL