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Gene: Traf7 (TNF receptor associated factor 7) Rattus norvegicus

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Symbol:

Traf7

Name:

TNF receptor associated factor 7

RGD ID:

1559653

Description:

Predicted to enable ubiquitin protein ligase activity. Involved in positive regulation of neuron apoptotic process. Predicted to be located in cytosol and perinuclear region of cytoplasm. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in adenomatoid tumor; hepatocellular carcinoma; and peritoneal mesothelioma. Orthologous to human TRAF7 (TNF receptor associated factor 7); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; ammonium chloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

E3 ubiquitin-protein ligase TRAF7; LOC360491; RGD1559653; similar to ring finger and WD repeat domain 1 isoform 1; Tnf receptor-associated factor 7; TNF receptor-associated factor 7, E3 ubiquitin protein ligase

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TRAF7 (TNF receptor associated factor 7)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Traf7 (TNF receptor-associated factor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Traf7 (TNF receptor associated factor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TRAF7 (TNF receptor associated factor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TRAF7 (TNF receptor associated factor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Traf7 (TNF receptor associated factor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TRAF7 (TNF receptor associated factor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TRAF7 (TNF receptor associated factor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Traf7 (TNF receptor associated factor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Traf7 (TNF receptor associated factor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Traf7 (TNF receptor-associated factor 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TRAF7 (TNF receptor associated factor 7)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	traf7 (TNF receptor-associated factor 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	traf7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	traf7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	14,038,117 - 14,056,832 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	14,038,117 - 14,056,694 (-)	Ensembl				GRCr8
mRatBN7.2	10	13,533,570 - 13,552,290 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	13,533,570 - 13,552,203 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	18,280,130 - 18,298,622 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	17,768,975 - 17,787,467 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	13,268,162 - 13,286,654 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	13,874,444 - 13,893,090 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	13,874,456 - 13,892,997 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	13,691,429 - 13,710,062 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	13,760,687 - 13,779,228 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	13,213,849 - 13,232,354 (-)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adenomatoid tumor (ISO)

Cardiac, Facial, and Digital Anomalies with Developmental Delay (ISO)

Developmental Disabilities (ISO)

genetic disease (ISO)

hepatocellular carcinoma (ISO)

malignant mesothelioma (ISO)

peritoneal mesothelioma (ISO)

Spinal Cord Injuries (IEP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

CU-O LINKAGE (ISO)

cyclosporin A (ISO)

diazinon (ISO)

dicrotophos (ISO)

ethanol (ISO)

folic acid (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

naphthalene (ISO)

nitrates (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

sodium arsenite (ISO)

Soman (EXP)

tamoxifen (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (IEA,ISO)

cellular response to interleukin-6 (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

positive regulation of apoptotic signaling pathway (IEA,ISO)

positive regulation of MAPK cascade (ISO)

positive regulation of neuron apoptotic process (IMP)

positive regulation of protein metabolic process (IEA)

positive regulation of protein sumoylation (ISO)

positive regulation of ubiquitin-dependent protein catabolic process (IEA,ISO)

protein K29-linked ubiquitination (IEA,ISO)

protein ubiquitination (IEA,ISO)

regulation of ERK1 and ERK2 cascade (IEA,ISO)

regulation of protein localization (ISO)

Cellular Component

cytoplasmic vesicle (IEA)

cytosol (ISO)

nucleus (IEA,ISO)

perinuclear region of cytoplasm (ISO)

ubiquitin ligase complex (IEA,ISO)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

transferase activity (IEA)

ubiquitin protein ligase activity (IEA,ISO)

ubiquitin-protein transferase activity (IEA,ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Adenomatoid tumors of the male and female genital tract are defined by TRAF7 mutations that drive aberrant NF-kB pathway activation.	Goode B, etal., Mod Pathol. 2018 Apr;31(4):660-673. doi: 10.1038/modpathol.2017.153. Epub 2017 Nov 17.
3.	TRAF7 enhances ubiquitin-degradation of KLF4 to promote hepatocellular carcinoma progression.	He H, etal., Cancer Lett. 2020 Jan 28;469:380-389. doi: 10.1016/j.canlet.2019.11.012. Epub 2019 Nov 12.
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation
7.	Well-differentiated papillary mesothelioma of the peritoneum is genetically defined by mutually exclusive mutations in TRAF7 and CDC42.	Stevers M, etal., Mod Pathol. 2019 Jan;32(1):88-99. doi: 10.1038/s41379-018-0127-2. Epub 2018 Aug 31.
8.	Up-regulation of TNF Receptor-associated Factor 7 after spinal cord injury in rats may have implication for neuronal apoptosis.	Xu D, etal., Neuropeptides. 2018 Oct;71:81-89. doi: 10.1016/j.npep.2018.08.001. Epub 2018 Aug 8.

Additional References at PubMed

PMID:12477932	PMID:14743216	PMID:15001576	PMID:16162816	PMID:29961569

Genomics

Comparative Map Data

Traf7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	14,038,117 - 14,056,832 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	14,038,117 - 14,056,694 (-)	Ensembl				GRCr8
mRatBN7.2	10	13,533,570 - 13,552,290 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	13,533,570 - 13,552,203 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	18,280,130 - 18,298,622 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	17,768,975 - 17,787,467 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	13,268,162 - 13,286,654 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	13,874,444 - 13,893,090 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	13,874,456 - 13,892,997 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	13,691,429 - 13,710,062 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	13,760,687 - 13,779,228 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	13,213,849 - 13,232,354 (-)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

TRAF7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	2,155,782 - 2,178,129 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	2,155,692 - 2,178,129 (+)	Ensembl			hg38	GRCh38
GRCh37	16	2,205,783 - 2,228,130 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	2,145,800 - 2,168,131 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	16	2,420,218 - 2,442,550 (+)	NCBI		Celera
Cytogenetic Map	16	p13.3	NCBI
HuRef	16	2,132,066 - 2,154,384 (+)	NCBI		HuRef
CHM1_1	16	2,205,774 - 2,228,103 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	2,178,244 - 2,200,598 (+)	NCBI		T2T-CHM13v2.0

Traf7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	24,727,824 - 24,746,912 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	24,727,536 - 24,746,912 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	24,508,850 - 24,527,938 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	24,508,562 - 24,527,938 (-)	Ensembl			mm10	GRCm38
MGSCv37	17	24,645,795 - 24,664,883 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	24,236,450 - 24,255,430 (-)	NCBI		MGSCv36	mm8
Celera	17	25,024,825 - 25,044,110 (-)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI
cM Map	17	12.4	NCBI

Traf7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	15,092,955 - 15,112,840 (-)	Ensembl
ChiLan1.0	NW_004955442	15,092,955 - 15,112,842 (-)	NCBI	ChiLan1.0	ChiLan1.0

TRAF7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	2,658,025 - 2,679,959 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	6,439,363 - 6,460,772 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	1,013,831 - 1,036,486 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	2,266,213 - 2,279,031 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	2,266,194 - 2,279,031 (+)	Ensembl			panPan2	panpan1.1

TRAF7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	38,788,451 - 38,805,666 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	38,788,454 - 38,962,167 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	40,027,602 - 40,044,841 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	39,096,963 - 39,114,204 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	39,096,963 - 39,114,105 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	38,781,803 - 38,799,041 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	38,754,119 - 38,771,345 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	39,232,866 - 39,250,103 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Traf7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	104,822,976 - 104,841,154 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936694	1,868,309 - 1,886,427 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936694	1,868,309 - 1,886,772 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRAF7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	39,810,606 - 39,828,395 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	39,811,803 - 39,828,450 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	42,353,140 - 42,369,754 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TRAF7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	2,051,247 - 2,072,763 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	2,059,349 - 2,071,297 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666068	28,989,286 - 29,010,804 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Traf7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624913	79,423 - 100,279 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624913	79,423 - 100,301 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Traf7
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	1,792,688 - 1,811,200 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Traf7
49 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	34
Count of miRNA genes:	31
Interacting mature miRNAs:	32
Transcripts:	ENSRNOT00000004192
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
631660	Hcar1	Hepatocarcinoma resistance QTL 1	3.4	0.0001	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	10	6661118	35509383	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5893811	50893811	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5893811	50893811	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6877142	51877142	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35730538	Rat
7387235	Uae41	Urinary albumin excretion QTL 41	5.26	0.1874	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	1	30004247	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	922197	45922197	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	2103708	47103708	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5893811	50893811	Rat
631828	Alc5	Alcohol consumption QTL 5	2.4		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	1	17749933	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38832698	Rat

Markers in Region

RH130595

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	13,553,457 - 13,553,669 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	13,894,331 - 13,894,542	NCBI	Rnor6.0
Rnor_5.0	10	13,711,316 - 13,711,527	UniSTS	Rnor5.0
RGSC_v3.4	10	13,780,562 - 13,780,773	UniSTS	RGSC3.4
Celera	10	13,233,688 - 13,233,899	UniSTS
Cytogenetic Map	10	q12	UniSTS

RH132048

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	14,057,156 - 14,057,554 (+)	Marker Load Pipeline
mRatBN7.2	10	13,552,609 - 13,553,007 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	13,893,483 - 13,893,880	NCBI	Rnor6.0
Rnor_5.0	10	13,710,468 - 13,710,865	UniSTS	Rnor5.0
RGSC_v3.4	10	13,779,714 - 13,780,111	UniSTS	RGSC3.4
Celera	10	13,232,840 - 13,233,237	UniSTS
RH 3.4 Map	10	171.7	UniSTS
Cytogenetic Map	10	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	92	59	6	356	192	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001127548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415153	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767585	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269309	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC103090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC161916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004192 ⟹ ENSRNOP00000004192

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	13,533,582 - 13,552,124 (-)	Ensembl
Rnor_6.0 Ensembl	10	13,874,456 - 13,892,997 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097263 ⟹ ENSRNOP00000094607

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	14,038,117 - 14,056,694 (-)	Ensembl
mRatBN7.2 Ensembl	10	13,533,584 - 13,552,203 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100967 ⟹ ENSRNOP00000081332

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	13,533,586 - 13,543,746 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107920 ⟹ ENSRNOP00000089242

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	13,533,582 - 13,542,578 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115734 ⟹ ENSRNOP00000082217

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	14,038,117 - 14,056,694 (-)	Ensembl
mRatBN7.2 Ensembl	10	13,533,570 - 13,552,125 (-)	Ensembl

RefSeq Acc Id:

NM_001127548 ⟹ NP_001121020

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,117 - 14,056,694 (-)	NCBI
mRatBN7.2	10	13,533,570 - 13,552,147 (-)	NCBI
Rnor_6.0	10	13,874,456 - 13,892,997 (-)	NCBI
Rnor_5.0	10	13,691,429 - 13,710,062 (-)	NCBI
RGSC_v3.4	10	13,760,687 - 13,779,228 (-)	RGD
Celera	10	13,213,849 - 13,232,354 (-)	RGD

Sequence:

show sequence

GGCAGAGAGGGGCAAGATGATGCCGGAGGGTGTAGCCGCTGCTCCCAGGCAGCTGCGGGCGGGG
GACACTGCCCAAGGACCCTGGATGCCTCTCTAGAGCATGAGCTCAGCCAAGAGTGCCCGCTACA
ACCGCTTCTCCGGGGGGCCTGCCAACCTTCCTGCCTCAGACAGCAGTGGGACCAGGATGGAAAC
AACCTTTGGGCCTACCTTTTCGACCGTCACCACCATTACCAAAGCTGATGGGACCAGCACATAC
AAACAGCATCGCAGGACGCCTTCCTCCTCTAGCACCCTTGCCTATTCGCCACGGGATGAGGAGG
ACGGCATGCCCCCCATCAACACTCCTCGCCGCTCTGACTCAGCCATCTCTGTCCGCTCCCTGCA
CTCCGAGTCCAGCATGTCCCTGCGCTCCACGTTCTCGCTGCCTGAGGAGGAAGAGGAGCCGGAG
CCATTGGTGTTTGCGGAGCAGCCCTCGGTGAAGCTGTGCTGCCAGCTCTGCTGCAGTGTGTTCA
AGGACCCTGTGATCACTACGTGTGGGCACACCTTCTGCAGACGATGCGCCTTGAAGTCAGAGAA
GTGTCCTGTGGACAATGCCAAGCTGACAGTGGTGGTAAACAACATTGCAGTAGCTGAGCAGATT
GGAGAGCTCTTCATACATTGTCGGCATGGCTGCCGTGCAGCAGGCACTGGGAAGCCCGGTGTCT
TTGAGGTAGACCCAAGGGGCTGCCCCTTCACCATCAAGCTTAGTGCCCGGAAGGACCACGAGAG
TAGTTGTGACTACAGGCCTGTGCGCTGCCCCAACAACCCCAGCTGCCCACCCCTTCTCAAGATG
AACCTCGAGGCCCACCTGAAAGAATGCGAGCACATCAAGTGTCCCCACTCTAAGTACGGGTGCA
CATTTATTGGGAATCAGGACACCTATGAGACGCACTTAGAAACATGTCGCTTTGAGGGCCTGAA
GGAATTCCTGCAGCAGACCGATGACCGCTTCCACGAGATGCATGTGGCACTGGCCCAGAAGGAC
CAGGAGATTGCCTTTCTGCGTTCCATGCTGGGCAAACTCTCAGAGAAGATTGACCAGCTGGAGA
AAAGCCTTGAGCTCAAGTTCGATGTCCTCGATGAGAACCAGAGCAAGCTCAGTGAGGACCTCAT
GGAATTCCGGAGGGATGCATCCATGTTGAATGATGAGCTGTCTCATATCAATGCACGCCTGAAC
ATGGGTATCCTGGGATCCTATGATCCTCAGCAGATCTTCAAGTGCAAAGGGACCTTCGTGGGAC
ACCAGGGCCCTGTCTGGTGTCTCTGTGTCTACTCCATGGGTGACCTGCTCTTCAGTGGCTCTTC
TGACAAGACGATCAAGGTGTGGGACACGTGTACCACTTACAAGTGCCAAAAGACACTGGAAGGT
CATGACGGTATTGTGCTGGCGCTCTGTATCCAGGGGTGCAAACTGTACAGTGGGTCTGCAGACT
GCACCATCATTGTATGGGACATCCAGAACCTGCAGAAGGTGAACACCATCCGGGCCCATGACAA
CCCTGTGTGCACACTGGTGTCTTCCCATAACATGCTCTTCAGTGGCTCCCTTAAAGCCATCAAG
GTCTGGGACATCGTGGGCACTGAGCTAAAGTTGAAGAAGGAACTCACAGGCCTCAACCACTGGG
TGCGGGCCTTGGTGGCAGCACAGAGCTATCTGTACAGTGGCTCTTACCAGACAATCAAGATCTG
GGACATTCGGACCCTTGACTGCATCCATGTCCTGCAGACATCTGGTGGCAGTGTGTATTCCATT
GCTGTGACGAATCACCACATTGTCTGTGGCACCTATGAGAACCTCATTCATGTATGGGACATTG
AATCCAAAGAGCAGGTGCGGACCCTAACGGGCCATGTGGGCACAGTATATGCCCTGGCAGTCAT
TTCAACACCAGACCAGACCAAAGTCTTCAGCGCATCCTATGACCGCTCCCTCAGGGTCTGGAGC
ATGGACAACATGATCTGCACACAGACGCTGCTGCGCCATCAGGGCAGTGTAACTGCACTGGCTG
TCTCCCGGGGCCGGCTCTTCTCGGGGGCTGTGGATAGCACCGTGAAGGTTTGGACATGCTAACA
GAATCCAGGCCAGGCTTGACTCCTTCTGGGTCTGTAAGTCAGGCTGGACCTCCATGATGGCCTT
GGAATGTCCGCCTGTCCTGTGGAGACAGGTAGACAGGCTCAAACAGCTAGGCAGTGTCCTCTCT
GCCTCTGCTCAGTGCGGGGTCTTTCATAAGGCCTCACTCTTACTTCTACCAGAGAAATGCCCAG
GCCCTGCTCTGGGCGCCAGGTACGATGCTTGCCCGGCCCCACCATTCATATCACTCCATAGACT
TTTGTTTTGAGACAGGGTCTCACTATGTAGCTCTGGCTTGCCTGGAACTCACTGTCAACCAGGC
TGGCCTCAAACTCACAGATCTGCCTGCCTCCACCTCCCAAGTGCTGGGAGTAAAGGCATGTGCC
ACCGCCCCTGGCTGGACCCAGATGGACCATGGGTCCTTTTTACTCACCTTTTCTACTGGTTTTA
GACTGTATATAGATTTTATTACTTCCCTGTTGAAATAAAAGCTGCACAGACTGTGAAAAAAAAA
AAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001415153 ⟹ NP_001402082

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,117 - 14,056,694 (-)	NCBI
mRatBN7.2	10	13,533,570 - 13,552,147 (-)	NCBI

RefSeq Acc Id:

XM_006245983 ⟹ XP_006246045

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,056,759 (-)	NCBI
mRatBN7.2	10	13,533,570 - 13,552,219 (-)	NCBI
Rnor_6.0	10	13,874,456 - 13,893,088 (-)	NCBI
Rnor_5.0	10	13,691,429 - 13,710,062 (-)	NCBI

Sequence:

show sequence

TAGAGTTCCTGAAGTCGGTGAACTACAAGTTCCGACGTGCACAGTGCCCGGGGACTTCCGGCTC
CTGTATCCTGTACCTTTCCCGGCCCCGGGCCGAGAGGGGCAAGATGATGCCGGAGGGTGTAGCC
GCTGCTCCCAGGCAGCTGCGGGCGGGGGACACTGCCCAAGGACCCTGGATGCCTCTCTAGAGCA
TGAGCTCAGCCAAGAGTGCCCGCTACAACCGCTTCTCCGGGGGGCCTGCCAACCTTCCTGCCTC
AGACAGCAGTGGGACCAGGATGGAAACAACCTTTGGGCCTACCTTTTCGACCGTCACCACCATT
ACCAAAGCAGCTGATGGGACCAGCACATACAAACAGCATCGCAGGACGCCTTCCTCCTCTAGCA
CCCTTGCCTATTCGCCACGGGATGAGGAGGACGGCATGCCCCCCATCAACACTCCTCGCCGCTC
TGACTCAGCCATCTCTGTCCGCTCCCTGCACTCCGAGTCCAGCATGTCCCTGCGCTCCACGTTC
TCGCTGCCTGAGGAGGAAGAGGAGCCGGAGCCATTGGTGTTTGCGGAGCAGCCCTCGGTGAAGC
TGTGCTGCCAGCTCTGCTGCAGTGTGTTCAAGGACCCTGTGATCACTACGTGTGGGCACACCTT
CTGCAGACGATGCGCCTTGAAGTCAGAGAAGTGTCCTGTGGACAATGCCAAGCTGACAGTGGTG
GTAAACAACATTGCAGTAGCTGAGCAGATTGGAGAGCTCTTCATACATTGTCGGCATGGCTGCC
GTGCAGCAGGCACTGGGAAGCCCGGTGTCTTTGAGGTAGACCCAAGGGGCTGCCCCTTCACCAT
CAAGCTTAGTGCCCGGAAGGACCACGAGAGTAGTTGTGACTACAGGCCTGTGCGCTGCCCCAAC
AACCCCAGCTGCCCACCCCTTCTCAAGATGAACCTCGAGGCCCACCTGAAAGAATGCGAGCACA
TCAAGTGTCCCCACTCTAAGTGCACATTTATTGGGAATCAGGACACCTATGAGACGCACTTAGA
AACATGTCGCTTTGAGGGCCTGAAGGAATTCCTGCAGCAGACCGATGACCGCTTCCACGAGATG
CATGTGGCACTGGCCCAGAAGGACCAGGAGATTGCCTTTCTGCGTTCCATGCTGGGCAAACTCT
CAGAGAAGATTGACCAGCTGGAGAAAAGCCTTGAGCTCAAGTTCGATGTCCTCGATGAGAACCA
GAGCAAGCTCAGTGAGGACCTCATGGAATTCCGGAGGGATGCATCCATGTTGAATGATGAGCTG
TCTCATATCAATGCACGCCTGAACATGGGTATCCTGGGATCCTATGATCCTCAGCAGATCTTCA
AGTGCAAAGGGACCTTCGTGGGACACCAGGGCCCTGTCTGGTGTCTCTGTGTCTACTCCATGGG
TGACCTGCTCTTCAGTGGCTCTTCTGACAAGACGATCAAGGTGTGGGACACGTGTACCACTTAC
AAGTGCCAAAAGACACTGGAAGGTCATGACGGTATTGTGCTGGCGCTCTGTATCCAGGGGTGCA
AACTGTACAGTGGGTCTGCAGACTGCACCATCATTGTATGGGACATCCAGAACCTGCAGAAGGT
GAACACCATCCGGGCCCATGACAACCCTGTGTGCACACTGGTGTCTTCCCATAACATGCTCTTC
AGTGGCTCCCTTAAAGCCATCAAGGTCTGGGACATCGTGGGCACTGAGCTAAAGTTGAAGAAGG
AACTCACAGGCCTCAACCACTGGGTGCGGGCCTTGGTGGCAGCACAGAGCTATCTGTACAGTGG
CTCTTACCAGACAATCAAGATCTGGGACATTCGGACCCTTGACTGCATCCATGTCCTGCAGACA
TCTGGTGGCAGTGTGTATTCCATTGCTGTGACGAATCACCACATTGTCTGTGGCACCTATGAGA
ACCTCATTCATGTATGGGACATTGAATCCAAAGAGCAGGTGCGGACCCTAACGGGCCATGTGGG
CACAGTATATGCCCTGGCAGTCATTTCAACACCAGACCAGACCAAAGTCTTCAGCGCATCCTAT
GACCGCTCCCTCAGGGTCTGGAGCATGGACAACATGATCTGCACACAGACGCTGCTGCGCCATC
AGGGCAGTGTAACTGCACTGGCTGTCTCCCGGGGCCGGCTCTTCTCGGGGGCTGTGGATAGCAC
CGTGAAGGTTTGGACATGCTAACAGAATCCAGGCCAGGCTTGACTCCTTCTGGGTCTGTAAGTC
AGGCTGGACCTCCATGATGGCCTTGGAATGTCCGCCTGTCCTGTGGAGACAGGTAGACAGGCTC
AAACAGCTAGGCAGTGTCCTCTCTGCCTCTGCTCAGTGCGGGGTCTTTCATAAGGCCTCACTCT
TACTTCTACCAGAGAAATGCCCAGGCCCTGCTCTGGGCGCCAGGTACGATGCTTGCCCGGCCCC
ACCATTCATATCACTCCATAGACTTTTGTTTTGAGACAGGGTCTCACTATGTAGCTCTGGCTTG
CCTGGAACTCACTGTCAACCAGGCTGGCCTCAAACTCACAGATCTGCCTGCCTCCACCTCCCAA
GTGCTGGGAGTAAAGGCATGTGCCACCGCCCCTGGCTGGACCCAGATGGACCATGGGTCCTTTT
TACTCACCTTTTCTACTGGTTTTAGACTGTATATAGATTTTATTACTTCCCTGTTGAAATAAAA
GCTGCACAGACTGTG

hide sequence

RefSeq Acc Id:

XM_006245985 ⟹ XP_006246047

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,048,274 (-)	NCBI
mRatBN7.2	10	13,533,570 - 13,543,746 (-)	NCBI
Rnor_6.0	10	13,874,444 - 13,884,573 (-)	NCBI
Rnor_5.0	10	13,691,429 - 13,710,062 (-)	NCBI

Sequence:

show sequence

AGCCAAGAGTGCCCGCTACAACCGCTTCTCCGGGGGGCCTGCCAACCTTCCTGCCTCAGACAGC
AGTGGGGTAAGAGAAGAGCCTGTAGACCAGGATGGAAACAACCTTTGGGCCTACCTTTTCGACC
GTCACCACCATTACCAAAGCAGCTGATGGGACCAGCACATACAAACAGCATCGCAGGACGCCTT
CCTCCTCTAGCACCCTTGCCTATTCGCCACGGGATGAGGAGGACGGCATGCCCCCCATCAACAC
TCCTCGCCGCTCTGACTCAGCCATCTCTGTCCGCTCCCTGCACTCCGAGTCCAGCATGTCCCTG
CGCTCCACGTTCTCGCTGCCTGAGGAGGAAGAGGAGCCGGAGCCATTGGTGTTTGCGGAGCAGC
CCTCGGTGAAGCTGTGCTGCCAGCTCTGCTGCAGTGTGTTCAAGGACCCTGTGATCACTACGTG
TGGGCACACCTTCTGCAGACGATGCGCCTTGAAGTCAGAGAAGTGTCCTGTGGACAATGCCAAG
CTGACAGTGGTGGTAAACAACATTGCAGTAGCTGAGCAGATTGGAGAGCTCTTCATACATTGTC
GGCATGGCTGCCGTGCAGCAGGCACTGGGAAGCCCGGTGTCTTTGAGGTAGACCCAAGGGGCTG
CCCCTTCACCATCAAGCTTAGTGCCCGGAAGGACCACGAGAGTAGTTGTGACTACAGGCCTGTG
CGCTGCCCCAACAACCCCAGCTGCCCACCCCTTCTCAAGATGAACCTCGAGGCCCACCTGAAAG
AATGCGAGCACATCAAGTGTCCCCACTCTAAGTACGGGTGCACATTTATTGGGAATCAGGACAC
CTATGAGACGCACTTAGAAACATGTCGCTTTGAGGGCCTGAAGGAATTCCTGCAGCAGACCGAT
GACCGCTTCCACGAGATGCATGTGGCACTGGCCCAGAAGGACCAGGAGATTGCCTTTCTGCGTT
CCATGCTGGGCAAACTCTCAGAGAAGATTGACCAGCTGGAGAAAAGCCTTGAGCTCAAGTTCGA
TGTCCTCGATGAGAACCAGAGCAAGCTCAGTGAGGACCTCATGGAATTCCGGAGGGATGCATCC
ATGTTGAATGATGAGCTGTCTCATATCAATGCACGCCTGAACATGGGTATCCTGGGATCCTATG
ATCCTCAGCAGATCTTCAAGTGCAAAGGGACCTTCGTGGGACACCAGGGCCCTGTCTGGTGTCT
CTGTGTCTACTCCATGGGTGACCTGCTCTTCAGTGGCTCTTCTGACAAGACGATCAAGGTGTGG
GACACGTGTACCACTTACAAGTGCCAAAAGACACTGGAAGGTCATGACGGTATTGTGCTGGCGC
TCTGTATCCAGGGGTGCAAACTGTACAGTGGGTCTGCAGACTGCACCATCATTGTATGGGACAT
CCAGAACCTGCAGAAGGTGAACACCATCCGGGCCCATGACAACCCTGTGTGCACACTGGTGTCT
TCCCATAACATGCTCTTCAGTGGCTCCCTTAAAGCCATCAAGGTCTGGGACATCGTGGGCACTG
AGCTAAAGTTGAAGAAGGAACTCACAGGCCTCAACCACTGGGTGCGGGCCTTGGTGGCAGCACA
GAGCTATCTGTACAGTGGCTCTTACCAGACAATCAAGATCTGGGACATTCGGACCCTTGACTGC
ATCCATGTCCTGCAGACATCTGGTGGCAGTGTGTATTCCATTGCTGTGACGAATCACCACATTG
TCTGTGGCACCTATGAGAACCTCATTCATGTATGGGACATTGAATCCAAAGAGCAGGTGCGGAC
CCTAACGGGCCATGTGGGCACAGTATATGCCCTGGCAGTCATTTCAACACCAGACCAGACCAAA
GTCTTCAGCGCATCCTATGACCGCTCCCTCAGGGTCTGGAGCATGGACAACATGATCTGCACAC
AGACGCTGCTGCGCCATCAGGGCAGTGTAACTGCACTGGCTGTCTCCCGGGGCCGGCTCTTCTC
GGGGGCTGTGGATAGCACCGTGAAGGTTTGGACATGCTAACAGAATCCAGGCCAGGCTTGACTC
CTTCTGGGTCTGTAAGTCAGGCTGGACCTCCATGATGGCCTTGGAATGTCCGCCTGTCCTGTGG
AGACAGGTAGACAGGCTCAAACAGCTAGGCAGTGTCCTCTCTGCCTCTGCTCAGTGCGGGGTCT
TTCATAAGGCCTCACTCTTACTTCTACCAGAGAAATGCCCAGGCCCTGCTCTGGGCGCCAGGTA
CGATGCTTGCCCGGCCCCACCATTCATATCACTCCATAGACTTTTGTTTTGAGACAGGGTCTCA
CTATGTAGCTCTGGCTTGCCTGGAACTCACTGTCAACCAGGCTGGCCTCAAACTCACAGATCTG
CCTGCCTCCACCTCCCAAGTGCTGGGAGTAAAGGCATGTGCCACCGCCCCTGGCTGGACCCAGA
TGGACCATGGGTCCTTTTTACTCACCTTTTCTACTGGTTTTAGACTGTATATAGATTTTATTAC
TTCCCTGTTGAAATAAAAGCTGCACAGACTGTGGTTGTGAGTGGA

hide sequence

RefSeq Acc Id:

XM_006245987 ⟹ XP_006246049

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,048,274 (-)	NCBI
mRatBN7.2	10	13,533,570 - 13,543,746 (-)	NCBI
Rnor_6.0	10	13,874,444 - 13,884,573 (-)	NCBI
Rnor_5.0	10	13,691,429 - 13,710,062 (-)	NCBI

Sequence:

show sequence

AGCCAAGAGTGCCCGCTACAACCGCTTCTCCGGGGGGCCTGCCAACCTTCCTGCCTCAGACAGC
AGTGGGGTAAGAGAAGAGCCTGTAGACCAGGATGGAAACAACCTTTGGGCCTACCTTTTCGACC
GTCACCACCATTACCAAAGCTGATGGGACCAGCACATACAAACAGCATCGCAGGACGCCTTCCT
CCTCTAGCACCCTTGCCTATTCGCCACGGGATGAGGAGGACGGCATGCCCCCCATCAACACTCC
TCGCCGCTCTGACTCAGCCATCTCTGTCCGCTCCCTGCACTCCGAGTCCAGCATGTCCCTGCGC
TCCACGTTCTCGCTGCCTGAGGAGGAAGAGGAGCCGGAGCCATTGGTGTTTGCGGAGCAGCCCT
CGGTGAAGCTGTGCTGCCAGCTCTGCTGCAGTGTGTTCAAGGACCCTGTGATCACTACGTGTGG
GCACACCTTCTGCAGACGATGCGCCTTGAAGTCAGAGAAGTGTCCTGTGGACAATGCCAAGCTG
ACAGTGGTGGTAAACAACATTGCAGTAGCTGAGCAGATTGGAGAGCTCTTCATACATTGTCGGC
ATGGCTGCCGTGCAGCAGGCACTGGGAAGCCCGGTGTCTTTGAGGTAGACCCAAGGGGCTGCCC
CTTCACCATCAAGCTTAGTGCCCGGAAGGACCACGAGAGTAGTTGTGACTACAGGCCTGTGCGC
TGCCCCAACAACCCCAGCTGCCCACCCCTTCTCAAGATGAACCTCGAGGCCCACCTGAAAGAAT
GCGAGCACATCAAGTGTCCCCACTCTAAGTACGGGTGCACATTTATTGGGAATCAGGACACCTA
TGAGACGCACTTAGAAACATGTCGCTTTGAGGGCCTGAAGGAATTCCTGCAGCAGACCGATGAC
CGCTTCCACGAGATGCATGTGGCACTGGCCCAGAAGGACCAGGAGATTGCCTTTCTGCGTTCCA
TGCTGGGCAAACTCTCAGAGAAGATTGACCAGCTGGAGAAAAGCCTTGAGCTCAAGTTCGATGT
CCTCGATGAGAACCAGAGCAAGCTCAGTGAGGACCTCATGGAATTCCGGAGGGATGCATCCATG
TTGAATGATGAGCTGTCTCATATCAATGCACGCCTGAACATGGGTATCCTGGGATCCTATGATC
CTCAGCAGATCTTCAAGTGCAAAGGGACCTTCGTGGGACACCAGGGCCCTGTCTGGTGTCTCTG
TGTCTACTCCATGGGTGACCTGCTCTTCAGTGGCTCTTCTGACAAGACGATCAAGGTGTGGGAC
ACGTGTACCACTTACAAGTGCCAAAAGACACTGGAAGGTCATGACGGTATTGTGCTGGCGCTCT
GTATCCAGGGGTGCAAACTGTACAGTGGGTCTGCAGACTGCACCATCATTGTATGGGACATCCA
GAACCTGCAGAAGGTGAACACCATCCGGGCCCATGACAACCCTGTGTGCACACTGGTGTCTTCC
CATAACATGCTCTTCAGTGGCTCCCTTAAAGCCATCAAGGTCTGGGACATCGTGGGCACTGAGC
TAAAGTTGAAGAAGGAACTCACAGGCCTCAACCACTGGGTGCGGGCCTTGGTGGCAGCACAGAG
CTATCTGTACAGTGGCTCTTACCAGACAATCAAGATCTGGGACATTCGGACCCTTGACTGCATC
CATGTCCTGCAGACATCTGGTGGCAGTGTGTATTCCATTGCTGTGACGAATCACCACATTGTCT
GTGGCACCTATGAGAACCTCATTCATGTATGGGACATTGAATCCAAAGAGCAGGTGCGGACCCT
AACGGGCCATGTGGGCACAGTATATGCCCTGGCAGTCATTTCAACACCAGACCAGACCAAAGTC
TTCAGCGCATCCTATGACCGCTCCCTCAGGGTCTGGAGCATGGACAACATGATCTGCACACAGA
CGCTGCTGCGCCATCAGGGCAGTGTAACTGCACTGGCTGTCTCCCGGGGCCGGCTCTTCTCGGG
GGCTGTGGATAGCACCGTGAAGGTTTGGACATGCTAACAGAATCCAGGCCAGGCTTGACTCCTT
CTGGGTCTGTAAGTCAGGCTGGACCTCCATGATGGCCTTGGAATGTCCGCCTGTCCTGTGGAGA
CAGGTAGACAGGCTCAAACAGCTAGGCAGTGTCCTCTCTGCCTCTGCTCAGTGCGGGGTCTTTC
ATAAGGCCTCACTCTTACTTCTACCAGAGAAATGCCCAGGCCCTGCTCTGGGCGCCAGGTACGA
TGCTTGCCCGGCCCCACCATTCATATCACTCCATAGACTTTTGTTTTGAGACAGGGTCTCACTA
TGTAGCTCTGGCTTGCCTGGAACTCACTGTCAACCAGGCTGGCCTCAAACTCACAGATCTGCCT
GCCTCCACCTCCCAAGTGCTGGGAGTAAAGGCATGTGCCACCGCCCCTGGCTGGACCCAGATGG
ACCATGGGTCCTTTTTACTCACCTTTTCTACTGGTTTTAGACTGTATATAGATTTTATTACTTC
CCTGTTGAAATAAAAGCTGCACAGACTGTGGTTGTGAGTGGA

hide sequence

RefSeq Acc Id:

XM_006245991 ⟹ XP_006246053

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,048,287 (-)	NCBI
mRatBN7.2	10	13,533,570 - 13,543,740 (-)	NCBI
Rnor_6.0	10	13,874,456 - 13,884,510 (-)	NCBI
Rnor_5.0	10	13,691,429 - 13,710,062 (-)	NCBI

Sequence:

show sequence

CAGTGGGGTAAGAGAAGAGCCTGTAGACCAGGATGGAAACAACCTTTGGGCCTACCTTTTCGAC
CGTCACCACCATTACCAAAGCAGCTGATGGGACCAGCACATACAAACAGCATCGCAGGACGCCT
TCCTCCTCTAGCACCCTTGCCTATTCGCCACGGGATGAGGAGGACGGCATGGGCTCAACCCCCT
GACAGGCTGCCTCCATCTGTGCAGCCCCCCATCAACACTCCTCGCCGCTCTGACTCAGCCATCT
CTGTCCGCTCCCTGCACTCCGAGTCCAGCATGTCCCTGCGCTCCACGTTCTCGCTGCCTGAGGA
GGAAGAGGAGCCGGAGCCATTGGTGTTTGCGGAGCAGCCCTCGGTGAAGCTGTGCTGCCAGCTC
TGCTGCAGTGTGTTCAAGGACCCTGTGATCACTACGTGTGGGCACACCTTCTGCAGACGATGCG
CCTTGAAGTCAGAGAAGTGTCCTGTGGACAATGCCAAGCTGACAGTGGTGGTAAACAACATTGC
AGTAGCTGAGCAGATTGGAGAGCTCTTCATACATTGTCGGCATGGCTGCCGTGCAGCAGGCACT
GGGAAGCCCGGTGTCTTTGAGGTAGACCCAAGGGGCTGCCCCTTCACCATCAAGCTTAGTGCCC
GGAAGGACCACGAGAGTAGTTGTGACTACAGGCCTGTGCGCTGCCCCAACAACCCCAGCTGCCC
ACCCCTTCTCAAGATGAACCTCGAGGCCCACCTGAAAGAATGCGAGCACATCAAGTGTCCCCAC
TCTAAGTACGGGTGCACATTTATTGGGAATCAGGACACCTATGAGACGCACTTAGAAACATGTC
GCTTTGAGGGCCTGAAGGAATTCCTGCAGCAGACCGATGACCGCTTCCACGAGATGCATGTGGC
ACTGGCCCAGAAGGACCAGGAGATTGCCTTTCTGCGTTCCATGCTGGGCAAACTCTCAGAGAAG
ATTGACCAGCTGGAGAAAAGCCTTGAGCTCAAGTTCGATGTCCTCGATGAGAACCAGAGCAAGC
TCAGTGAGGACCTCATGGAATTCCGGAGGGATGCATCCATGTTGAATGATGAGCTGTCTCATAT
CAATGCACGCCTGAACATGGGTATCCTGGGATCCTATGATCCTCAGCAGATCTTCAAGTGCAAA
GGGACCTTCGTGGGACACCAGGGCCCTGTCTGGTGTCTCTGTGTCTACTCCATGGGTGACCTGC
TCTTCAGTGGCTCTTCTGACAAGACGATCAAGGTGTGGGACACGTGTACCACTTACAAGTGCCA
AAAGACACTGGAAGGTCATGACGGTATTGTGCTGGCGCTCTGTATCCAGGGGTGCAAACTGTAC
AGTGGGTCTGCAGACTGCACCATCATTGTATGGGACATCCAGAACCTGCAGAAGGTGAACACCA
TCCGGGCCCATGACAACCCTGTGTGCACACTGGTGTCTTCCCATAACATGCTCTTCAGTGGCTC
CCTTAAAGCCATCAAGGTCTGGGACATCGTGGGCACTGAGCTAAAGTTGAAGAAGGAACTCACA
GGCCTCAACCACTGGGTGCGGGCCTTGGTGGCAGCACAGAGCTATCTGTACAGTGGCTCTTACC
AGACAATCAAGATCTGGGACATTCGGACCCTTGACTGCATCCATGTCCTGCAGACATCTGGTGG
CAGTGTGTATTCCATTGCTGTGACGAATCACCACATTGTCTGTGGCACCTATGAGAACCTCATT
CATGTATGGGACATTGAATCCAAAGAGCAGGTGCGGACCCTAACGGGCCATGTGGGCACAGTAT
ATGCCCTGGCAGTCATTTCAACACCAGACCAGACCAAAGTCTTCAGCGCATCCTATGACCGCTC
CCTCAGGGTCTGGAGCATGGACAACATGATCTGCACACAGACGCTGCTGCGCCATCAGGGCAGT
GTAACTGCACTGGCTGTCTCCCGGGGCCGGCTCTTCTCGGGGGCTGTGGATAGCACCGTGAAGG
TTTGGACATGCTAACAGAATCCAGGCCAGGCTTGACTCCTTCTGGGTCTGTAAGTCAGGCTGGA
CCTCCATGATGGCCTTGGAATGTCCGCCTGTCCTGTGGAGACAGGTAGACAGGCTCAAACAGCT
AGGCAGTGTCCTCTCTGCCTCTGCTCAGTGCGGGGTCTTTCATAAGGCCTCACTCTTACTTCTA
CCAGAGAAATGCCCAGGCCCTGCTCTGGGCGCCAGGTACGATGCTTGCCCGGCCCCACCATTCA
TATCACTCCATAGACTTTTGTTTTGAGACAGGGTCTCACTATGTAGCTCTGGCTTGCCTGGAAC
TCACTGTCAACCAGGCTGGCCTCAAACTCACAGATCTGCCTGCCTCCACCTCCCAAGTGCTGGG
AGTAAAGGCATGTGCCACCGCCCCTGGCTGGACCCAGATGGACCATGGGTCCTTTTTACTCACC
TTTTCTACTGGTTTTAGACTGTATATAGATTTTATTACTTCCCTGTTGAAATAAAAGCTGCACA
GACTGTG

hide sequence

RefSeq Acc Id:

XM_006245992 ⟹ XP_006246054

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,048,258 (-)	NCBI
mRatBN7.2	10	13,533,570 - 13,543,706 (-)	NCBI
Rnor_6.0	10	13,874,456 - 13,884,528 (-)	NCBI
Rnor_5.0	10	13,691,429 - 13,710,062 (-)	NCBI

Sequence:

show sequence

CCTTCCTGCCTCAGACAGCAGTGGGGATGGAAACAACCTTTGGGCCTACCTTTTCGACCGTCAC
CACCATTACCAAAGCTGATGGGACCAGCACATACAAACAGCATCGCAGGACGCCTTCCTCCTCT
AGCACCCTTGCCTATTCGCCACGGGATGAGGAGGACGGCATGGGCTCAACCCCCTGACAGGCTG
CCTCCATCTGTGCAGCCCCCCATCAACACTCCTCGCCGCTCTGACTCAGCCATCTCTGTCCGCT
CCCTGCACTCCGAGTCCAGCATGTCCCTGCGCTCCACGTTCTCGCTGCCTGAGGAGGAAGAGGA
GCCGGAGCCATTGGTGTTTGCGGAGCAGCCCTCGGTGAAGCTGTGCTGCCAGCTCTGCTGCAGT
GTGTTCAAGGACCCTGTGATCACTACGTGTGGGCACACCTTCTGCAGACGATGCGCCTTGAAGT
CAGAGAAGTGTCCTGTGGACAATGCCAAGCTGACAGTGGTGGTAAACAACATTGCAGTAGCTGA
GCAGATTGGAGAGCTCTTCATACATTGTCGGCATGGCTGCCGTGCAGCAGGCACTGGGAAGCCC
GGTGTCTTTGAGGTAGACCCAAGGGGCTGCCCCTTCACCATCAAGCTTAGTGCCCGGAAGGACC
ACGAGAGTAGTTGTGACTACAGGCCTGTGCGCTGCCCCAACAACCCCAGCTGCCCACCCCTTCT
CAAGATGAACCTCGAGGCCCACCTGAAAGAATGCGAGCACATCAAGTGTCCCCACTCTAAGTAC
GGGTGCACATTTATTGGGAATCAGGACACCTATGAGACGCACTTAGAAACATGTCGCTTTGAGG
GCCTGAAGGAATTCCTGCAGCAGACCGATGACCGCTTCCACGAGATGCATGTGGCACTGGCCCA
GAAGGACCAGGAGATTGCCTTTCTGCGTTCCATGCTGGGCAAACTCTCAGAGAAGATTGACCAG
CTGGAGAAAAGCCTTGAGCTCAAGTTCGATGTCCTCGATGAGAACCAGAGCAAGCTCAGTGAGG
ACCTCATGGAATTCCGGAGGGATGCATCCATGTTGAATGATGAGCTGTCTCATATCAATGCACG
CCTGAACATGGGTATCCTGGGATCCTATGATCCTCAGCAGATCTTCAAGTGCAAAGGGACCTTC
GTGGGACACCAGGGCCCTGTCTGGTGTCTCTGTGTCTACTCCATGGGTGACCTGCTCTTCAGTG
GCTCTTCTGACAAGACGATCAAGGTGTGGGACACGTGTACCACTTACAAGTGCCAAAAGACACT
GGAAGGTCATGACGGTATTGTGCTGGCGCTCTGTATCCAGGGGTGCAAACTGTACAGTGGGTCT
GCAGACTGCACCATCATTGTATGGGACATCCAGAACCTGCAGAAGGTGAACACCATCCGGGCCC
ATGACAACCCTGTGTGCACACTGGTGTCTTCCCATAACATGCTCTTCAGTGGCTCCCTTAAAGC
CATCAAGGTCTGGGACATCGTGGGCACTGAGCTAAAGTTGAAGAAGGAACTCACAGGCCTCAAC
CACTGGGTGCGGGCCTTGGTGGCAGCACAGAGCTATCTGTACAGTGGCTCTTACCAGACAATCA
AGATCTGGGACATTCGGACCCTTGACTGCATCCATGTCCTGCAGACATCTGGTGGCAGTGTGTA
TTCCATTGCTGTGACGAATCACCACATTGTCTGTGGCACCTATGAGAACCTCATTCATGTATGG
GACATTGAATCCAAAGAGCAGGTGCGGACCCTAACGGGCCATGTGGGCACAGTATATGCCCTGG
CAGTCATTTCAACACCAGACCAGACCAAAGTCTTCAGCGCATCCTATGACCGCTCCCTCAGGGT
CTGGAGCATGGACAACATGATCTGCACACAGACGCTGCTGCGCCATCAGGGCAGTGTAACTGCA
CTGGCTGTCTCCCGGGGCCGGCTCTTCTCGGGGGCTGTGGATAGCACCGTGAAGGTTTGGACAT
GCTAACAGAATCCAGGCCAGGCTTGACTCCTTCTGGGTCTGTAAGTCAGGCTGGACCTCCATGA
TGGCCTTGGAATGTCCGCCTGTCCTGTGGAGACAGGTAGACAGGCTCAAACAGCTAGGCAGTGT
CCTCTCTGCCTCTGCTCAGTGCGGGGTCTTTCATAAGGCCTCACTCTTACTTCTACCAGAGAAA
TGCCCAGGCCCTGCTCTGGGCGCCAGGTACGATGCTTGCCCGGCCCCACCATTCATATCACTCC
ATAGACTTTTGTTTTGAGACAGGGTCTCACTATGTAGCTCTGGCTTGCCTGGAACTCACTGTCA
ACCAGGCTGGCCTCAAACTCACAGATCTGCCTGCCTCCACCTCCCAAGTGCTGGGAGTAAAGGC
ATGTGCCACCGCCCCTGGCTGGACCCAGATGGACCATGGGTCCTTTTTACTCACCTTTTCTACT
GGTTTTAGACTGTATATAGATTTTATTACTTCCCTGTTGAAATAAAAGCTGCACAGACTGTG

hide sequence

RefSeq Acc Id:

XM_006245993 ⟹ XP_006246055

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,048,287 (-)	NCBI
mRatBN7.2	10	13,533,570 - 13,543,740 (-)	NCBI
Rnor_6.0	10	13,874,456 - 13,884,504 (-)	NCBI
Rnor_5.0	10	13,691,429 - 13,710,062 (-)	NCBI

Sequence:

show sequence

GGTAAGAGAAGAGCCTGTAGACCAGGATGGAAACAACCTTTGGGCCTACCTTTTCGACCGTCAC
CACCATTACCAAAGCTGATGGGACCAGCACATACAAACAGCATCGCAGGACGCCTTCCTCCTCT
AGCACCCTTGCCTATTCGCCACGGGATGAGGAGGACGGCATGGGCTCAACCCCCTGACAGGCTG
CCTCCATCTGTGCAGCCCCCCATCAACACTCCTCGCCGCTCTGACTCAGCCATCTCTGTCCGCT
CCCTGCACTCCGAGTCCAGCATGTCCCTGCGCTCCACGTTCTCGCTGCCTGAGGAGGAAGAGGA
GCCGGAGCCATTGGTGTTTGCGGAGCAGCCCTCGGTGAAGCTGTGCTGCCAGCTCTGCTGCAGT
GTGTTCAAGGACCCTGTGATCACTACGTGTGGGCACACCTTCTGCAGACGATGCGCCTTGAAGT
CAGAGAAGTGTCCTGTGGACAATGCCAAGCTGACAGTGGTGGTAAACAACATTGCAGTAGCTGA
GCAGATTGGAGAGCTCTTCATACATTGTCGGCATGGCTGCCGTGCAGCAGGCACTGGGAAGCCC
GGTGTCTTTGAGGTAGACCCAAGGGGCTGCCCCTTCACCATCAAGCTTAGTGCCCGGAAGGACC
ACGAGAGTAGTTGTGACTACAGGCCTGTGCGCTGCCCCAACAACCCCAGCTGCCCACCCCTTCT
CAAGATGAACCTCGAGGCCCACCTGAAAGAATGCGAGCACATCAAGTGTCCCCACTCTAAGTAC
GGGTGCACATTTATTGGGAATCAGGACACCTATGAGACGCACTTAGAAACATGTCGCTTTGAGG
GCCTGAAGGAATTCCTGCAGCAGACCGATGACCGCTTCCACGAGATGCATGTGGCACTGGCCCA
GAAGGACCAGGAGATTGCCTTTCTGCGTTCCATGCTGGGCAAACTCTCAGAGAAGATTGACCAG
CTGGAGAAAAGCCTTGAGCTCAAGTTCGATGTCCTCGATGAGAACCAGAGCAAGCTCAGTGAGG
ACCTCATGGAATTCCGGAGGGATGCATCCATGTTGAATGATGAGCTGTCTCATATCAATGCACG
CCTGAACATGGGTATCCTGGGATCCTATGATCCTCAGCAGATCTTCAAGTGCAAAGGGACCTTC
GTGGGACACCAGGGCCCTGTCTGGTGTCTCTGTGTCTACTCCATGGGTGACCTGCTCTTCAGTG
GCTCTTCTGACAAGACGATCAAGGTGTGGGACACGTGTACCACTTACAAGTGCCAAAAGACACT
GGAAGGTCATGACGGTATTGTGCTGGCGCTCTGTATCCAGGGGTGCAAACTGTACAGTGGGTCT
GCAGACTGCACCATCATTGTATGGGACATCCAGAACCTGCAGAAGGTGAACACCATCCGGGCCC
ATGACAACCCTGTGTGCACACTGGTGTCTTCCCATAACATGCTCTTCAGTGGCTCCCTTAAAGC
CATCAAGGTCTGGGACATCGTGGGCACTGAGCTAAAGTTGAAGAAGGAACTCACAGGCCTCAAC
CACTGGGTGCGGGCCTTGGTGGCAGCACAGAGCTATCTGTACAGTGGCTCTTACCAGACAATCA
AGATCTGGGACATTCGGACCCTTGACTGCATCCATGTCCTGCAGACATCTGGTGGCAGTGTGTA
TTCCATTGCTGTGACGAATCACCACATTGTCTGTGGCACCTATGAGAACCTCATTCATGTATGG
GACATTGAATCCAAAGAGCAGGTGCGGACCCTAACGGGCCATGTGGGCACAGTATATGCCCTGG
CAGTCATTTCAACACCAGACCAGACCAAAGTCTTCAGCGCATCCTATGACCGCTCCCTCAGGGT
CTGGAGCATGGACAACATGATCTGCACACAGACGCTGCTGCGCCATCAGGGCAGTGTAACTGCA
CTGGCTGTCTCCCGGGGCCGGCTCTTCTCGGGGGCTGTGGATAGCACCGTGAAGGTTTGGACAT
GCTAACAGAATCCAGGCCAGGCTTGACTCCTTCTGGGTCTGTAAGTCAGGCTGGACCTCCATGA
TGGCCTTGGAATGTCCGCCTGTCCTGTGGAGACAGGTAGACAGGCTCAAACAGCTAGGCAGTGT
CCTCTCTGCCTCTGCTCAGTGCGGGGTCTTTCATAAGGCCTCACTCTTACTTCTACCAGAGAAA
TGCCCAGGCCCTGCTCTGGGCGCCAGGTACGATGCTTGCCCGGCCCCACCATTCATATCACTCC
ATAGACTTTTGTTTTGAGACAGGGTCTCACTATGTAGCTCTGGCTTGCCTGGAACTCACTGTCA
ACCAGGCTGGCCTCAAACTCACAGATCTGCCTGCCTCCACCTCCCAAGTGCTGGGAGTAAAGGC
ATGTGCCACCGCCCCTGGCTGGACCCAGATGGACCATGGGTCCTTTTTACTCACCTTTTCTACT
GGTTTTAGACTGTATATAGATTTTATTACTTCCCTGTTGAAATAAAAGCTGCACAGACTGTG

hide sequence

RefSeq Acc Id:

XM_017597366 ⟹ XP_017452855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,056,760 (-)	NCBI
mRatBN7.2	10	13,533,570 - 13,552,223 (-)	NCBI
Rnor_6.0	10	13,874,456 - 13,893,088 (-)	NCBI

Sequence:

show sequence

TAGAGTTCCTGAAGTCGGTGAACTACAAGTTCCGACGTGCACAGTGCCCGGGGACTTCCGGCTC
CTGTATCCTGTACCTTTCCCGGCCCCGGGCCGAGAGGGGCAAGATGATGCCGGAGGGTGTAGCC
GCTGCTCCCAGGCAGCTGCGGGCGGGGGACACTGCCCAAGGACCCTGGATGCCTCTCTAGAGCA
TGAGCTCAGCCAAGAGTGCCCGCTACAACCGCTTCTCCGGGGGGCCTGCCAACCTTCCTGCCTC
AGACAGCAGTGGGCAGCTGATGGGACCAGCACATACAAACAGCATCGCAGGACGCCTTCCTCCT
CTAGCACCCTTGCCTATTCGCCACGGGATGAGGAGGACGGCATGGGCTCAACCCCCTGACAGGC
TGCCTCCATCTGTGCAGCCCCCCATCAACACTCCTCGCCGCTCTGACTCAGCCATCTCTGTCCG
CTCCCTGCACTCCGAGTCCAGCATGTCCCTGCGCTCCACGTTCTCGCTGCCTGAGGAGGAAGAG
GAGCCGGAGCCATTGGTGTTTGCGGAGCAGCCCTCGGTGAAGCTGTGCTGCCAGCTCTGCTGCA
GTGTGTTCAAGGACCCTGTGATCACTACGTGTGGGCACACCTTCTGCAGACGATGCGCCTTGAA
GTCAGAGAAGTGTCCTGTGGACAATGCCAAGCTGACAGTGGTGGTAAACAACATTGCAGTAGCT
GAGCAGATTGGAGAGCTCTTCATACATTGTCGGCATGGCTGCCGTGCAGCAGGCACTGGGAAGC
CCGGTGTCTTTGAGGTAGACCCAAGGGGCTGCCCCTTCACCATCAAGCTTAGTGCCCGGAAGGA
CCACGAGAGTAGTTGTGACTACAGGCCTGTGCGCTGCCCCAACAACCCCAGCTGCCCACCCCTT
CTCAAGATGAACCTCGAGGCCCACCTGAAAGAATGCGAGCACATCAAGTGTCCCCACTCTAAGT
ACGGGTGCACATTTATTGGGAATCAGGACACCTATGAGACGCACTTAGAAACATGTCGCTTTGA
GGGCCTGAAGGAATTCCTGCAGCAGACCGATGACCGCTTCCACGAGATGCATGTGGCACTGGCC
CAGAAGGACCAGGAGATTGCCTTTCTGCGTTCCATGCTGGGCAAACTCTCAGAGAAGATTGACC
AGCTGGAGAAAAGCCTTGAGCTCAAGTTCGATGTCCTCGATGAGAACCAGAGCAAGCTCAGTGA
GGACCTCATGGAATTCCGGAGGGATGCATCCATGTTGAATGATGAGCTGTCTCATATCAATGCA
CGCCTGAACATGGGTATCCTGGGATCCTATGATCCTCAGCAGATCTTCAAGTGCAAAGGGACCT
TCGTGGGACACCAGGGCCCTGTCTGGTGTCTCTGTGTCTACTCCATGGGTGACCTGCTCTTCAG
TGGCTCTTCTGACAAGACGATCAAGGTGTGGGACACGTGTACCACTTACAAGTGCCAAAAGACA
CTGGAAGGTCATGACGGTATTGTGCTGGCGCTCTGTATCCAGGGGTGCAAACTGTACAGTGGGT
CTGCAGACTGCACCATCATTGTATGGGACATCCAGAACCTGCAGAAGGTGAACACCATCCGGGC
CCATGACAACCCTGTGTGCACACTGGTGTCTTCCCATAACATGCTCTTCAGTGGCTCCCTTAAA
GCCATCAAGGTCTGGGACATCGTGGGCACTGAGCTAAAGTTGAAGAAGGAACTCACAGGCCTCA
ACCACTGGGTGCGGGCCTTGGTGGCAGCACAGAGCTATCTGTACAGTGGCTCTTACCAGACAAT
CAAGATCTGGGACATTCGGACCCTTGACTGCATCCATGTCCTGCAGACATCTGGTGGCAGTGTG
TATTCCATTGCTGTGACGAATCACCACATTGTCTGTGGCACCTATGAGAACCTCATTCATGTAT
GGGACATTGAATCCAAAGAGCAGGTGCGGACCCTAACGGGCCATGTGGGCACAGTATATGCCCT
GGCAGTCATTTCAACACCAGACCAGACCAAAGTCTTCAGCGCATCCTATGACCGCTCCCTCAGG
GTCTGGAGCATGGACAACATGATCTGCACACAGACGCTGCTGCGCCATCAGGGCAGTGTAACTG
CACTGGCTGTCTCCCGGGGCCGGCTCTTCTCGGGGGCTGTGGATAGCACCGTGAAGGTTTGGAC
ATGCTAACAGAATCCAGGCCAGGCTTGACTCCTTCTGGGTCTGTAAGTCAGGCTGGACCTCCAT
GATGGCCTTGGAATGTCCGCCTGTCCTGTGGAGACAGGTAGACAGGCTCAAACAGCTAGGCAGT
GTCCTCTCTGCCTCTGCTCAGTGCGGGGTCTTTCATAAGGCCTCACTCTTACTTCTACCAGAGA
AATGCCCAGGCCCTGCTCTGGGCGCCAGGTACGATGCTTGCCCGGCCCCACCATTCATATCACT
CCATAGACTTTTGTTTTGAGACAGGGTCTCACTATGTAGCTCTGGCTTGCCTGGAACTCACTGT
CAACCAGGCTGGCCTCAAACTCACAGATCTGCCTGCCTCCACCTCCCAAGTGCTGGGAGTAAAG
GCATGTGCCACCGCCCCTGGCTGGACCCAGATGGACCATGGGTCCTTTTTACTCACCTTTTCTA
CTGGTTTTAGACTGTATATAGATTTTATTACTTCCCTGTTGAAATAAAAGCTGCACAGACTGTG

hide sequence

RefSeq Acc Id:

XM_039086269 ⟹ XP_038942197

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,056,760 (-)	NCBI
mRatBN7.2	10	13,533,570 - 13,552,223 (-)	NCBI

RefSeq Acc Id:

XM_039086271 ⟹ XP_038942199

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,056,795 (-)	NCBI
mRatBN7.2	10	13,533,570 - 13,552,290 (-)	NCBI

RefSeq Acc Id:

XM_063269306 ⟹ XP_063125376

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,048,292 (-)	NCBI

RefSeq Acc Id:

XM_063269307 ⟹ XP_063125377

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,048,292 (-)	NCBI

RefSeq Acc Id:

XM_063269308 ⟹ XP_063125378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,056,732 (-)	NCBI

RefSeq Acc Id:

XM_063269309 ⟹ XP_063125379

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,056,832 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001121020	(Get FASTA)	NCBI Sequence Viewer
	NP_001402082	(Get FASTA)	NCBI Sequence Viewer
	XP_006246045	(Get FASTA)	NCBI Sequence Viewer
	XP_006246047	(Get FASTA)	NCBI Sequence Viewer
	XP_006246049	(Get FASTA)	NCBI Sequence Viewer
	XP_006246053	(Get FASTA)	NCBI Sequence Viewer
	XP_006246054	(Get FASTA)	NCBI Sequence Viewer
	XP_006246055	(Get FASTA)	NCBI Sequence Viewer
	XP_017452855	(Get FASTA)	NCBI Sequence Viewer
	XP_038942197	(Get FASTA)	NCBI Sequence Viewer
	XP_038942199	(Get FASTA)	NCBI Sequence Viewer
	XP_063125376	(Get FASTA)	NCBI Sequence Viewer
	XP_063125377	(Get FASTA)	NCBI Sequence Viewer
	XP_063125378	(Get FASTA)	NCBI Sequence Viewer
	XP_063125379	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI61916	(Get FASTA)	NCBI Sequence Viewer
	EDM03842	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000082217
	ENSRNOP00000082217.1
	ENSRNOP00000094607
	ENSRNOP00000094607.2

RefSeq Acc Id:	NP_001121020 ⟸ NM_001127548
- Peptide Label:	isoform 2
- UniProtKB:	B1WBW7 (UniProtKB/TrEMBL), F7FIY6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSAKSARYNRFSGGPANLPASDSSGTRMETTFGPTFSTVTTITKADGTSTYKQHRRTPSSSST LAYSPRDEEDGMPPINTPRRSDSAISVRSLHSESSMSLRSTFSLPEEEEEPEPLVFAEQPSVKL CCQLCCSVFKDPVITTCGHTFCRRCALKSEKCPVDNAKLTVVVNNIAVAEQIGELFIHCRHGCR AAGTGKPGVFEVDPRGCPFTIKLSARKDHESSCDYRPVRCPNNPSCPPLLKMNLEAHLKECEHI KCPHSKYGCTFIGNQDTYETHLETCRFEGLKEFLQQTDDRFHEMHVALAQKDQEIAFLRSMLGK LSEKIDQLEKSLELKFDVLDENQSKLSEDLMEFRRDASMLNDELSHINARLNMGILGSYDPQQI FKCKGTFVGHQGPVWCLCVYSMGDLLFSGSSDKTIKVWDTCTTYKCQKTLEGHDGIVLALCIQG CKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLVSSHNMLFSGSLKAIKVWDIVGTELKLK KELTGLNHWVRALVAAQSYLYSGSYQTIKIWDIRTLDCIHVLQTSGGSVYSIAVTNHHIVCGTY ENLIHVWDIESKEQVRTLTGHVGTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLR HQGSVTALAVSRGRLFSGAVDSTVKVWTC hide sequence

RefSeq Acc Id:	XP_006246045 ⟸ XM_006245983
- Peptide Label:	isoform X1
- UniProtKB:	F7FIY6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSAKSARYNRFSGGPANLPASDSSGTRMETTFGPTFSTVTTITKAADGTSTYKQHRRTPSSSS TLAYSPRDEEDGMPPINTPRRSDSAISVRSLHSESSMSLRSTFSLPEEEEEPEPLVFAEQPSVK LCCQLCCSVFKDPVITTCGHTFCRRCALKSEKCPVDNAKLTVVVNNIAVAEQIGELFIHCRHGC RAAGTGKPGVFEVDPRGCPFTIKLSARKDHESSCDYRPVRCPNNPSCPPLLKMNLEAHLKECEH IKCPHSKCTFIGNQDTYETHLETCRFEGLKEFLQQTDDRFHEMHVALAQKDQEIAFLRSMLGKL SEKIDQLEKSLELKFDVLDENQSKLSEDLMEFRRDASMLNDELSHINARLNMGILGSYDPQQIF KCKGTFVGHQGPVWCLCVYSMGDLLFSGSSDKTIKVWDTCTTYKCQKTLEGHDGIVLALCIQGC KLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLVSSHNMLFSGSLKAIKVWDIVGTELKLKK ELTGLNHWVRALVAAQSYLYSGSYQTIKIWDIRTLDCIHVLQTSGGSVYSIAVTNHHIVCGTYE NLIHVWDIESKEQVRTLTGHVGTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRH QGSVTALAVSRGRLFSGAVDSTVKVWTC hide sequence

RefSeq Acc Id:	XP_006246054 ⟸ XM_006245992
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6AMJ5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGPAHTNSIAGRLPPLAPLPIRHGMRRTAWAQPPDRLPPSVQPPINTPRRSDSAISVRSLHSES SMSLRSTFSLPEEEEEPEPLVFAEQPSVKLCCQLCCSVFKDPVITTCGHTFCRRCALKSEKCPV DNAKLTVVVNNIAVAEQIGELFIHCRHGCRAAGTGKPGVFEVDPRGCPFTIKLSARKDHESSCD YRPVRCPNNPSCPPLLKMNLEAHLKECEHIKCPHSKYGCTFIGNQDTYETHLETCRFEGLKEFL QQTDDRFHEMHVALAQKDQEIAFLRSMLGKLSEKIDQLEKSLELKFDVLDENQSKLSEDLMEFR RDASMLNDELSHINARLNMGILGSYDPQQIFKCKGTFVGHQGPVWCLCVYSMGDLLFSGSSDKT IKVWDTCTTYKCQKTLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVC TLVSSHNMLFSGSLKAIKVWDIVGTELKLKKELTGLNHWVRALVAAQSYLYSGSYQTIKIWDIR TLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLTGHVGTVYALAVISTP DQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSGAVDSTVKVWTC hide sequence

RefSeq Acc Id:	XP_006246047 ⟸ XM_006245985
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A9T1 (UniProtKB/TrEMBL)
- Sequence:	show sequence METTFGPTFSTVTTITKAADGTSTYKQHRRTPSSSSTLAYSPRDEEDGMPPINTPRRSDSAISV RSLHSESSMSLRSTFSLPEEEEEPEPLVFAEQPSVKLCCQLCCSVFKDPVITTCGHTFCRRCAL KSEKCPVDNAKLTVVVNNIAVAEQIGELFIHCRHGCRAAGTGKPGVFEVDPRGCPFTIKLSARK DHESSCDYRPVRCPNNPSCPPLLKMNLEAHLKECEHIKCPHSKYGCTFIGNQDTYETHLETCRF EGLKEFLQQTDDRFHEMHVALAQKDQEIAFLRSMLGKLSEKIDQLEKSLELKFDVLDENQSKLS EDLMEFRRDASMLNDELSHINARLNMGILGSYDPQQIFKCKGTFVGHQGPVWCLCVYSMGDLLF SGSSDKTIKVWDTCTTYKCQKTLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIR AHDNPVCTLVSSHNMLFSGSLKAIKVWDIVGTELKLKKELTGLNHWVRALVAAQSYLYSGSYQT IKIWDIRTLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLTGHVGTVYA LAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSGAVDSTVKVW TC hide sequence

RefSeq Acc Id:	XP_006246049 ⟸ XM_006245987
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6A9T1 (UniProtKB/TrEMBL)
- Sequence:	show sequence METTFGPTFSTVTTITKADGTSTYKQHRRTPSSSSTLAYSPRDEEDGMPPINTPRRSDSAISVR SLHSESSMSLRSTFSLPEEEEEPEPLVFAEQPSVKLCCQLCCSVFKDPVITTCGHTFCRRCALK SEKCPVDNAKLTVVVNNIAVAEQIGELFIHCRHGCRAAGTGKPGVFEVDPRGCPFTIKLSARKD HESSCDYRPVRCPNNPSCPPLLKMNLEAHLKECEHIKCPHSKYGCTFIGNQDTYETHLETCRFE GLKEFLQQTDDRFHEMHVALAQKDQEIAFLRSMLGKLSEKIDQLEKSLELKFDVLDENQSKLSE DLMEFRRDASMLNDELSHINARLNMGILGSYDPQQIFKCKGTFVGHQGPVWCLCVYSMGDLLFS GSSDKTIKVWDTCTTYKCQKTLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIRA HDNPVCTLVSSHNMLFSGSLKAIKVWDIVGTELKLKKELTGLNHWVRALVAAQSYLYSGSYQTI KIWDIRTLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLTGHVGTVYAL AVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSGAVDSTVKVWT C hide sequence

RefSeq Acc Id:	XP_006246053 ⟸ XM_006245991
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6AMJ5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGPAHTNSIAGRLPPLAPLPIRHGMRRTAWAQPPDRLPPSVQPPINTPRRSDSAISVRSLHSES SMSLRSTFSLPEEEEEPEPLVFAEQPSVKLCCQLCCSVFKDPVITTCGHTFCRRCALKSEKCPV DNAKLTVVVNNIAVAEQIGELFIHCRHGCRAAGTGKPGVFEVDPRGCPFTIKLSARKDHESSCD YRPVRCPNNPSCPPLLKMNLEAHLKECEHIKCPHSKYGCTFIGNQDTYETHLETCRFEGLKEFL QQTDDRFHEMHVALAQKDQEIAFLRSMLGKLSEKIDQLEKSLELKFDVLDENQSKLSEDLMEFR RDASMLNDELSHINARLNMGILGSYDPQQIFKCKGTFVGHQGPVWCLCVYSMGDLLFSGSSDKT IKVWDTCTTYKCQKTLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVC TLVSSHNMLFSGSLKAIKVWDIVGTELKLKKELTGLNHWVRALVAAQSYLYSGSYQTIKIWDIR TLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLTGHVGTVYALAVISTP DQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSGAVDSTVKVWTC hide sequence

RefSeq Acc Id:	XP_006246055 ⟸ XM_006245993
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6AMJ5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGPAHTNSIAGRLPPLAPLPIRHGMRRTAWAQPPDRLPPSVQPPINTPRRSDSAISVRSLHSES SMSLRSTFSLPEEEEEPEPLVFAEQPSVKLCCQLCCSVFKDPVITTCGHTFCRRCALKSEKCPV DNAKLTVVVNNIAVAEQIGELFIHCRHGCRAAGTGKPGVFEVDPRGCPFTIKLSARKDHESSCD YRPVRCPNNPSCPPLLKMNLEAHLKECEHIKCPHSKYGCTFIGNQDTYETHLETCRFEGLKEFL QQTDDRFHEMHVALAQKDQEIAFLRSMLGKLSEKIDQLEKSLELKFDVLDENQSKLSEDLMEFR RDASMLNDELSHINARLNMGILGSYDPQQIFKCKGTFVGHQGPVWCLCVYSMGDLLFSGSSDKT IKVWDTCTTYKCQKTLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVC TLVSSHNMLFSGSLKAIKVWDIVGTELKLKKELTGLNHWVRALVAAQSYLYSGSYQTIKIWDIR TLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLTGHVGTVYALAVISTP DQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSGAVDSTVKVWTC hide sequence

RefSeq Acc Id:	XP_017452855 ⟸ XM_017597366
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AMJ5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSAKSARYNRFSGGPANLPASDSSGQLMGPAHTNSIAGRLPPLAPLPIRHGMRRTAWAQPPDR LPPSVQPPINTPRRSDSAISVRSLHSESSMSLRSTFSLPEEEEEPEPLVFAEQPSVKLCCQLCC SVFKDPVITTCGHTFCRRCALKSEKCPVDNAKLTVVVNNIAVAEQIGELFIHCRHGCRAAGTGK PGVFEVDPRGCPFTIKLSARKDHESSCDYRPVRCPNNPSCPPLLKMNLEAHLKECEHIKCPHSK YGCTFIGNQDTYETHLETCRFEGLKEFLQQTDDRFHEMHVALAQKDQEIAFLRSMLGKLSEKID QLEKSLELKFDVLDENQSKLSEDLMEFRRDASMLNDELSHINARLNMGILGSYDPQQIFKCKGT FVGHQGPVWCLCVYSMGDLLFSGSSDKTIKVWDTCTTYKCQKTLEGHDGIVLALCIQGCKLYSG SADCTIIVWDIQNLQKVNTIRAHDNPVCTLVSSHNMLFSGSLKAIKVWDIVGTELKLKKELTGL NHWVRALVAAQSYLYSGSYQTIKIWDIRTLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHV WDIESKEQVRTLTGHVGTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVT ALAVSRGRLFSGAVDSTVKVWTC hide sequence

Ensembl Acc Id:

ENSRNOP00000004192 ⟸ ENSRNOT00000004192

RefSeq Acc Id:	XP_038942199 ⟸ XM_039086271
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6AMJ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038942197 ⟸ XM_039086269
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AMJ5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000081332 ⟸ ENSRNOT00000100967

Ensembl Acc Id:

ENSRNOP00000082217 ⟸ ENSRNOT00000115734

Ensembl Acc Id:

ENSRNOP00000089242 ⟸ ENSRNOT00000107920

Ensembl Acc Id:

ENSRNOP00000094607 ⟸ ENSRNOT00000097263

RefSeq Acc Id:	NP_001402082 ⟸ NM_001415153
- Peptide Label:	isoform 1
- UniProtKB:	F7FIY6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125379 ⟸ XM_063269309
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6AMJ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125378 ⟸ XM_063269308
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6AMJ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125377 ⟸ XM_063269307
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6A9T1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125376 ⟸ XM_063269306
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A9T1 (UniProtKB/TrEMBL)

Protein Domains

RING-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B1WBW7-F1-model_v2	AlphaFold	B1WBW7	1-669	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697014

Promoter ID:

EPDNEW_R7539

Type:

initiation region

Name:

Traf7_1

Description:

TNF receptor associated factor 7

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	13,893,020 - 13,893,080	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1559653	AgrOrtholog
BioCyc Gene	G2FUF-25853	BioCyc
Ensembl Genes	ENSRNOG00000003131	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000097263	ENTREZGENE
	ENSRNOT00000097263.2	UniProtKB/TrEMBL
	ENSRNOT00000115734	ENTREZGENE
	ENSRNOT00000115734.2	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8369808	IMAGE-MGC_LOAD
InterPro	G-protein_beta_WD-40_rep_reg	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_CS	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
	Znf-RING_LisH	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_RING_CS	UniProtKB/TrEMBL
	Znf_TRAF	UniProtKB/TrEMBL
KEGG Report	rno:360491	UniProtKB/TrEMBL
MGC_CLONE	MGC:187654	IMAGE-MGC_LOAD
NCBI Gene	360491	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE TRAF7	UniProtKB/TrEMBL
	WD40 REPEAT PROTEIN	UniProtKB/TrEMBL
Pfam	WD40	UniProtKB/TrEMBL
	zf-RING_UBOX	UniProtKB/TrEMBL
PhenoGen	Traf7	PhenoGen
PRINTS	GPROTEINBRPT	UniProtKB/TrEMBL
PROSITE	WD_REPEATS_1	UniProtKB/TrEMBL
	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
	ZF_RING_1	UniProtKB/TrEMBL
	ZF_RING_2	UniProtKB/TrEMBL
	ZF_TRAF	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000003131	RatGTEx
SMART	RING	UniProtKB/TrEMBL
	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	RING/U-box	UniProtKB/TrEMBL
	TRAF domain-like	UniProtKB/TrEMBL
	WD40_like	UniProtKB/TrEMBL
UniProt	A0A8I5ZTK4_RAT	UniProtKB/TrEMBL
	A0A8I6A9T1	ENTREZGENE
	A0A8I6AMJ5	ENTREZGENE, UniProtKB/TrEMBL
	B1WBW7	ENTREZGENE, UniProtKB/TrEMBL
	F7FIY6	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-25	Traf7	TNF receptor associated factor 7	Traf7	TNF receptor-associated factor 7, E3 ubiquitin protein ligase	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-10-16	Traf7	TNF receptor-associated factor 7, E3 ubiquitin protein ligase	Traf7	Tnf receptor-associated factor 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Traf7	Tnf receptor-associated factor 7	Traf7_predicted	Tnf receptor-associated factor 7 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Traf7_predicted	Tnf receptor-associated factor 7 (predicted)	RGD1559653_predicted	similar to ring finger and WD repeat domain 1 isoform 1 (predicted)	Symbol and Name updated	1299863	APPROVED
2006-03-07	RGD1559653_predicted	similar to ring finger and WD repeat domain 1 isoform 1 (predicted)	LOC360491	similar to ring finger and WD repeat domain 1 isoform 1	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC360491	similar to ring finger and WD repeat domain 1 isoform 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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