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Gene: Ankrd39 (ankyrin repeat domain 39) Rattus norvegicus

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Symbol:

Ankrd39

Name:

ankyrin repeat domain 39

RGD ID:

1559504

Description:

Orthologous to human ANKRD39 (ankyrin repeat domain 39); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 4-amino-2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ankyrin repeat domain-containing protein 39; LOC367251; RGD1559504; similar to hypothetical protein MGC41816

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ANKRD39 (ankyrin repeat domain 39)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ankrd39 (ankyrin repeat domain 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ankrd39 (ankyrin repeat domain 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ANKRD39 (ankyrin repeat domain 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ANKRD39 (ankyrin repeat domain 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ankrd39 (ankyrin repeat domain 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ANKRD39 (ankyrin repeat domain 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ANKRD39 (ankyrin repeat domain 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ankrd39 (ankyrin repeat domain 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ankrd39 (ankyrin repeat domain 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Ankrd39 (ankyrin repeat domain 39)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ankrd39 (ankyrin repeat domain 39)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ANKRD39 (ankyrin repeat domain 39)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ankrd39 (ankyrin repeat domain 39)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ankrd39 (ankyrin repeat domain 39)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG44001	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG44001	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ankrd39	Alliance	DIOPT (OMA\|OrthoFinder)
Xenopus tropicalis (tropical clawed frog):	ankrd39	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	46,277,659 - 46,286,050 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	46,279,952 - 46,286,043 (-)	Ensembl				GRCr8
mRatBN7.2	9	38,780,291 - 38,790,177 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	38,781,785 - 38,790,201 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	47,285,367 - 47,293,695 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	52,400,585 - 52,408,969 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	50,682,486 - 50,690,870 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	43,119,532 - 43,127,923 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	43,117,914 - 43,127,887 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	42,773,438 - 42,781,822 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	35,481,261 - 35,491,148 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	36,548,161 - 36,556,545 (-)	NCBI		Celera
Cytogenetic Map	9	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

2-methylcholine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-amino-2,6-dinitrotoluene (EXP)

aflatoxin B1 (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

calcium silicate (ISO)

chlorpyrifos (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

doxorubicin (ISO)

folic acid (ISO)

formaldehyde (ISO)

paraquat (EXP)

silver atom (ISO)

silver(0) (ISO)

titanium dioxide (ISO)

tunicamycin (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15632090

Genomics

Comparative Map Data

Ankrd39
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	46,277,659 - 46,286,050 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	46,279,952 - 46,286,043 (-)	Ensembl				GRCr8
mRatBN7.2	9	38,780,291 - 38,790,177 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	38,781,785 - 38,790,201 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	47,285,367 - 47,293,695 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	52,400,585 - 52,408,969 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	50,682,486 - 50,690,870 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	43,119,532 - 43,127,923 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	43,117,914 - 43,127,887 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	42,773,438 - 42,781,822 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	35,481,261 - 35,491,148 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	36,548,161 - 36,556,545 (-)	NCBI		Celera
Cytogenetic Map	9	q21	NCBI

ANKRD39
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	96,847,990 - 96,858,016 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	96,836,611 - 96,858,016 (-)	Ensembl			hg38	GRCh38
GRCh37	2	97,513,727 - 97,523,753 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	96,877,449 - 96,887,483 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	2	91,953,885 - 91,963,918 (-)	NCBI		Celera
Cytogenetic Map	2	q11.2	NCBI
HuRef	2	91,473,820 - 91,483,854 (-)	NCBI		HuRef
CHM1_1	2	97,518,658 - 97,528,692 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	97,354,621 - 97,364,647 (-)	NCBI		T2T-CHM13v2.0

Ankrd39
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	36,577,252 - 36,586,333 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	36,576,588 - 36,586,526 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	36,538,171 - 36,547,252 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	36,537,507 - 36,547,445 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	36,595,018 - 36,604,046 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	36,482,719 - 36,491,747 (-)	NCBI		MGSCv36	mm8
Celera	1	36,324,984 - 36,334,013 (-)	NCBI		Celera
Cytogenetic Map	1	B	NCBI
cM Map	1	15.32	NCBI

Ankrd39
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	4,203,363 - 4,211,560 (-)	Ensembl
ChiLan1.0	NW_004955470	4,203,363 - 4,211,560 (-)	NCBI	ChiLan1.0	ChiLan1.0

ANKRD39
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	31,450,572 - 31,466,271 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	31,453,338 - 31,469,032 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	102,456,845 - 102,472,533 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	97,761,709 - 97,779,065 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

ANKRD39
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	45,117,875 - 45,126,556 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	45,117,903 - 45,132,817 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	45,044,489 - 45,053,162 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	45,993,820 - 46,002,506 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	45,993,842 - 46,035,580 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	45,705,330 - 45,714,017 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	45,991,763 - 46,000,439 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	46,175,162 - 46,184,059 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ankrd39
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	83,530,307 - 83,539,636 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936744	779,770 - 792,689 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936744	784,399 - 792,551 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ANKRD39
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	56,762,386 - 56,775,004 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	56,762,366 - 56,774,253 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	59,233,938 - 59,245,826 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ANKRD39
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	1,168,933 - 1,187,869 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	1,175,082 - 1,187,796 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	168,603,759 - 168,624,994 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ankrd39
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	2,728,301 - 2,735,477 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624749	2,728,051 - 2,735,520 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ankrd39
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	112,762,102 - 112,770,540 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ankrd39
42 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	70
Count of miRNA genes:	56
Interacting mature miRNAs:	69
Transcripts:	ENSRNOT00000021685
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5346479	50346479	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	40029925	85029925	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	8750492	53750492	Rat
1300180	Bw14	Body weight QTL 14	3.776		body mass (VT:0001259)	body weight (CMO:0000012)	9	31250432	68875676	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	44458256	99506504	Rat
61450	Ciaa3	CIA Autoantibody QTL 3	6.5		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	9	29567664	74567664	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	44458256	85262605	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	29567664	83835942	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	41720295	86720295	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	6214995	51214995	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	8750492	53750492	Rat
7207805	Bmd88	Bone mineral density QTL 88	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	9	31250432	65651574	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5346479	50416711	Rat
1600365	Mcs20	Mammary carcinoma susceptibility QTL 20	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	9	21031430	49025574	Rat
1581517	Bp284	Blood pressure QTL 284			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	39220186	84220186	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	40029925	85029925	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	6214995	51214995	Rat
1598823	Memor16	Memory QTL 16	1.9		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	31456061	57460683	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	34960590	79960590	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	88	59	6	352	188	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001135014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021685 ⟹ ENSRNOP00000021685

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	9	43,117,914 - 43,127,887 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104997 ⟹ ENSRNOP00000081622

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	46,279,952 - 46,286,043 (-)	Ensembl
mRatBN7.2 Ensembl	9	38,781,785 - 38,790,201 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110684 ⟹ ENSRNOP00000097031

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	38,781,785 - 38,789,863 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111223 ⟹ ENSRNOP00000076851

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	38,781,785 - 38,790,201 (-)	Ensembl

RefSeq Acc Id:

NM_001135014 ⟹ NP_001128486

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,277,659 - 46,286,043 (-)	NCBI
mRatBN7.2	9	38,781,786 - 38,790,171 (-)	NCBI
Rnor_6.0	9	43,119,532 - 43,127,916 (-)	NCBI
Rnor_5.0	9	42,773,438 - 42,781,822 (-)	NCBI
RGSC_v3.4	9	35,481,261 - 35,491,148 (-)	RGD
Celera	9	36,548,161 - 36,556,545 (-)	RGD

Sequence:

show sequence

AGGAGCGCGTGGCTGCAATCCCGGCAGCCGGGATGGCGGCACCTCAGTCGTGCGCGGATGGCTC
CTGCTGCTCGCACCCTGGTGCGGTGCCCGGGGTACAGCAGACACTGGAAGAGATGGACTTCGAG
AGGGGAATCTGGTCGGCCGCCCTGAATGGAGACCTGGGCCGAGTGAAGCATTTCATCCAGAAGG
CCACAGACCCTAGCCAGCCAGACTCTGCTGGCTACACTGCACTGCACTATGCTAGCCGCAATGG
GCACTATGACGTTTGCCAGTTTCTGCTAGAAAATGGAGCAAAGTGTGATGCCCGGACCAACGGG
GGCGCCACGGCTTTGCACCGGGCCAGCTACTGTGGGCACACGGAAATCGCACGGCTGCTGCTTT
CCCATGGGTCCAACCCCCAGCTGGTGGACGATGACGGCATGACCAGTCTACATAAGGCTGCCGA
GAAGGGTCATGAGGACATTTGCTCCCTCCTGTTACAACACAGCCCAGCCCTGAAGACTGTCCGG
GATCGCAAAGCACGCCTAGCATGTGACCTGCTGCCCTGCAACAGTGGCCTGTGGGACCTGCTGG
CCAGCTGAGGCTCCTCCTCCTGTGTCTGGCTGCCCTTGAAGGGTGCACAGACTAGCTCTCCCTG
CCCCCAACTTGTACCAACCGCATCGTGCTGCCGGGACCAGGGCCGGAATGCCCTGAAGAGCCCG
GTCTGGCCAGTGTGGCAGCCGGCAGGGGAAGACTTGGGAGCCTAGACAGGCGATCATATAAGCG
AATCCATGTAGAGATACATAGCCATTTGAAAGAAAATAAAGCTCATCTCTTGATGTCATCCCAC
GGACAAAGATGAATTTCAAAATGCAGCATTCGGAAGCTAAAAACACAAAACTTTGAAGTATTAG
AGAAAACATGGGGCTGGAGAGACGGCTCAGTGGTTTAGAGCACTGACTGCTCTTCCAGAGGTCC
TGAGTTCAAATCCCAGCAACCACATGGTGGCTCATAACCATCTGTAATGGGATCTGATGCCCTC
TTCTGGTGTGTCTGAAGACAGCTACAATGTACTTATATATAATAAATAAATCTTGGGAAAAAAA
GAAAAAA

hide sequence

RefSeq Acc Id:

XM_017596572 ⟹ XP_017452061

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,277,659 - 46,286,050 (-)	NCBI
mRatBN7.2	9	38,780,291 - 38,790,177 (-)	NCBI
Rnor_6.0	9	43,120,126 - 43,127,923 (-)	NCBI

Sequence:

show sequence

ATTCCGTAGGAGCGCGTGGCTGCAATCCCGGCAGCCGGGATGGCGGCACCTCAGTCGTGCGCGG
ATGGCTCCTGCTGCTCGCACCCTGGTGCGGTGCCCGGGGTACAGCAGACACTGGAAGAGATGGA
CTTCGAGAGGGGAATCTGGTCGGCCGCCCTGAATGGAGACCTGGGCCGAGTGAAGCATTTCATC
CAGAAGGCCACAGACCCTAGCCAGCCAGACTCTGCTGGCTACACTGCACTGCACTATGCTAGCC
GCAATGGGCACTATGACGTTTGCCAGTTTCTGCTAGAAAATGGAGCAAAGTGTGATGCCCGGAC
CAACGGGGGCGCCACGGCTTTGCACCGGGCCAGCTACTGTGGGCACACGGAAATCGCACGGCTG
CTGCTTTCCCATGGGTCCAACCCCCAGCTGGTGGACGATGACGGCATGACCAGTCTACATAAGG
TATGTCGCTCTCTCCCTCTATCTCCCTCCCCCAGGCTGCCGAGAAGGGTCATGAGGACATTTGC
TCCCTCCTGTTACAACACAGCCCAGCCCTGA

hide sequence

RefSeq Acc Id:

XM_063267506 ⟹ XP_063123576

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,281,840 - 46,286,039 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001128486	(Get FASTA)	NCBI Sequence Viewer
	XP_017452061	(Get FASTA)	NCBI Sequence Viewer
	XP_063123576	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL99269	(Get FASTA)	NCBI Sequence Viewer
	EDL99270	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000081622.2

RefSeq Acc Id:	NP_001128486 ⟸ NM_001135014
- UniProtKB:	A0A8I6ATQ7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAPQSCADGSCCSHPGAVPGVQQTLEEMDFERGIWSAALNGDLGRVKHFIQKATDPSQPDSAG YTALHYASRNGHYDVCQFLLENGAKCDARTNGGATALHRASYCGHTEIARLLLSHGSNPQLVDD DGMTSLHKAAEKGHEDICSLLLQHSPALKTVRDRKARLACDLLPCNSGLWDLLAS hide sequence

RefSeq Acc Id:	XP_017452061 ⟸ XM_017596572
- Peptide Label:	isoform X2
- Sequence:	show sequence MAAPQSCADGSCCSHPGAVPGVQQTLEEMDFERGIWSAALNGDLGRVKHFIQKATDPSQPDSAG YTALHYASRNGHYDVCQFLLENGAKCDARTNGGATALHRASYCGHTEIARLLLSHGSNPQLVDD DGMTSLHKVCRSLPLSPSPRLPRRVMRTFAPSCYNTAQP hide sequence

Ensembl Acc Id:

ENSRNOP00000021685 ⟸ ENSRNOT00000021685

Ensembl Acc Id:

ENSRNOP00000081622 ⟸ ENSRNOT00000104997

Ensembl Acc Id:

ENSRNOP00000076851 ⟸ ENSRNOT00000111223

Ensembl Acc Id:

ENSRNOP00000097031 ⟸ ENSRNOT00000110684

RefSeq Acc Id:	XP_063123576 ⟸ XM_063267506
- Peptide Label:	isoform X1
- UniProtKB:	A6INE1 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AAF1-F1-model_v2	AlphaFold	D4AAF1	1-183	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696605

Promoter ID:

EPDNEW_R7130

Type:

multiple initiation site

Name:

Ankrd39_1

Description:

ankyrin repeat domain 39

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	43,127,847 - 43,127,907	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1559504	AgrOrtholog
BioCyc Gene	G2FUF-27807	BioCyc
Ensembl Genes	ENSRNOG00000023995	Ensembl
	ENSRNOG00000064008	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000104997.2	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.20	UniProtKB/TrEMBL
InterPro	Ankyrin_rpt	UniProtKB/TrEMBL
	Ankyrin_rpt-contain_sf	UniProtKB/TrEMBL
NCBI Gene	367251	ENTREZGENE
PANTHER	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED	UniProtKB/TrEMBL
Pfam	Ank	UniProtKB/TrEMBL
	Ank_2	UniProtKB/TrEMBL
PhenoGen	Ankrd39	PhenoGen
PRINTS	ANKYRIN	UniProtKB/TrEMBL
PROSITE	ANK_REP_REGION	UniProtKB/TrEMBL
	ANK_REPEAT	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000023995	RatGTEx
	ENSRNOG00000064008	RatGTEx
SMART	ANK	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48403	UniProtKB/TrEMBL
UniProt	A0A8I5ZSF1_RAT	UniProtKB/TrEMBL
	A0A8I6ATQ7	ENTREZGENE
	A6INE1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Ankrd39	ankyrin repeat domain 39	Ankrd39_predicted	ankyrin repeat domain 39 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Ankrd39_predicted	ankyrin repeat domain 39 (predicted)	RGD1559504_predicted	similar to hypothetical protein MGC41816 (predicted)	Symbol and Name updated	1299863	APPROVED
2006-03-07	RGD1559504_predicted	similar to hypothetical protein MGC41816 (predicted)	LOC367251	similar to hypothetical protein MGC41816	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC367251	similar to hypothetical protein MGC41816			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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