Tpm2 (tropomyosin 2) - Rat Genome Database

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Gene: Tpm2 (tropomyosin 2) Rattus norvegicus
Analyze
Symbol: Tpm2
Name: tropomyosin 2
RGD ID: 1559479
Description: Enables actin filament binding activity; protein heterodimerization activity; and protein homodimerization activity. Predicted to be involved in actin filament organization and muscle contraction. Located in actin cytoskeleton. Human ortholog(s) of this gene implicated in distal arthrogryposis type 1A and nemaline myopathy 4. Orthologous to human TPM2 (tropomyosin 2); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: beta-tropomyosin; MGC109519; similar to tropomyosin 1, embryonic fibroblast - rat; tropomyosin; tropomyosin 2, beta; tropomyosin beta chain; tropomyosin-2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8562,566,712 - 62,576,066 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl562,566,652 - 62,575,726 (-)EnsemblGRCr8
mRatBN7.2557,770,919 - 57,780,278 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl557,770,864 - 57,779,992 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx559,750,807 - 59,759,817 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0561,569,623 - 61,578,633 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0561,540,839 - 61,549,996 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0559,016,616 - 59,025,971 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl559,016,622 - 59,025,631 (-)Ensemblrn6Rnor6.0
Rnor_5.0563,541,215 - 63,550,146 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4559,994,101 - 60,003,261 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera556,351,476 - 56,360,486 (-)NCBICelera
Cytogenetic Map5q22NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
amitrole  (EXP)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
cisplatin  (EXP,ISO)
clofibrate  (ISO)
clotrimazole  (EXP)
clozapine  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
DDT  (EXP)
decabromodiphenyl ether  (EXP)
dexamethasone  (ISO)
dextran sulfate  (ISO)
dibutyl phthalate  (EXP,ISO)
diethyl maleate  (EXP)
diethylstilbestrol  (EXP,ISO)
diisononyl phthalate  (ISO)
dioxygen  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
elemental selenium  (ISO)
entinostat  (ISO)
furan  (EXP)
graphene oxide  (ISO)
graphite  (ISO)
hyaluronic acid  (EXP)
hydralazine  (ISO)
hydrogen peroxide  (EXP)
inulin  (ISO)
ivermectin  (ISO)
ketoconazole  (EXP)
lipopolysaccharide  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
nitrates  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phenobarbital  (EXP,ISO)
phenylephrine  (EXP)
PhIP  (EXP)
pirinixic acid  (EXP,ISO)
potassium dichromate  (ISO)
resveratrol  (EXP)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (EXP)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
Soman  (EXP)
spermine  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
acebutolol pharmacodynamics pathway   (ISO)
adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway  (ISO)
amiodarone pharmacodynamics pathway  (ISO)
amlodipine pharmacodynamics pathway  (ISO)
atenolol pharmacodynamics pathway  (ISO)
betaxolol pharmacodynamics pathway  (ISO)
bisoprolol pharmacodynamics pathway  (ISO)
bupranolol drug pathway  (ISO)
bupranolol pharmacodynamics pathway  (ISO)
carvedilol pharmacodynamics pathway  (ISO)
dilated cardiomyopathy pathway  (IEA)
diltiazem pharmacodynamics pathway  (ISO)
disopyramide pharmacodynamics pathway  (ISO)
dobutamine pharmacodynamics pathway  (ISO)
esmolol pharmacodynamics pathway  (ISO)
flecainde pharmacodynamics pathway  (ISO)
fosphenytoin pharmacodynamics pathway  (ISO)
hypertrophic cardiomyopathy pathway  (IEA)
ibutilide pharmacodynamics pathway  (ISO)
isoprenaline pharmacodynamics pathway  (ISO)
isradipine pharmacodynamics pathway  (ISO)
levobunolol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
metoprolol pharmacodynamics pathway  (ISO)
mexiletine pharmacodynamics pathway  (ISO)
nadolol pharmacodynamics pathway  (ISO)
nebivolol pharmacodynamics pathway  (ISO)
nifedipine pharmacodynamics pathway  (ISO)
nimodipine pharmacodynamics pathway  (ISO)
nisoldipine pharmacodynamics pathway  (ISO)
nitrendipine pharmacodynamics pathway  (ISO)
penbutolol pharmacodynamics pathway  (ISO)
phenytoin pharmacodynamics pathway  (ISO)
pindolol pharmacodynamics pathway  (ISO)
procainamide pharmacodynamics pathway  (ISO)
propranolol pharmacodynamics pathway  (ISO)
quinidine pharmacodynamics pathway  (ISO)
sotalol pharmacodynamics pathway  (ISO)
timolol pharmacodynamics pathway  (ISO)
verapamil pharmacodynamics pathway  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Specificity of dimer formation in tropomyosins: influence of alternatively spliced exons on homodimer and heterodimer assembly. Gimona M, etal., Proc Natl Acad Sci U S A. 1995 Oct 10;92(21):9776-80.
3. In vitro formation and characterization of the skeletal muscle a·ß tropomyosin heterodimers. Kalyva A, etal., Biochemistry. 2012 Aug 14;51(32):6388-99. Epub 2012 Aug 3.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:2432392   PMID:3840484   PMID:8889548   PMID:12947022   PMID:17194691   PMID:19182904   PMID:25369766   PMID:29183317   PMID:35352799  


Genomics

Comparative Map Data
Tpm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8562,566,712 - 62,576,066 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl562,566,652 - 62,575,726 (-)EnsemblGRCr8
mRatBN7.2557,770,919 - 57,780,278 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl557,770,864 - 57,779,992 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx559,750,807 - 59,759,817 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0561,569,623 - 61,578,633 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0561,540,839 - 61,549,996 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0559,016,616 - 59,025,971 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl559,016,622 - 59,025,631 (-)Ensemblrn6Rnor6.0
Rnor_5.0563,541,215 - 63,550,146 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4559,994,101 - 60,003,261 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera556,351,476 - 56,360,486 (-)NCBICelera
Cytogenetic Map5q22NCBI
TPM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38935,681,993 - 35,690,056 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl935,681,992 - 35,690,056 (-)Ensemblhg38GRCh38
GRCh37935,681,990 - 35,690,053 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36935,671,990 - 35,680,053 (-)NCBIBuild 36Build 36hg18NCBI36
Celera935,615,536 - 35,623,601 (-)NCBICelera
Cytogenetic Map9p13.3NCBI
HuRef935,637,598 - 35,645,663 (-)NCBIHuRef
CHM1_1935,681,818 - 35,689,882 (-)NCBICHM1_1
T2T-CHM13v2.0935,702,645 - 35,710,710 (-)NCBIT2T-CHM13v2.0
Tpm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39443,513,726 - 43,523,583 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl443,514,711 - 43,523,765 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38443,513,726 - 43,523,583 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl443,514,711 - 43,523,765 (-)Ensemblmm10GRCm38
MGSCv37443,527,584 - 43,536,260 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36443,535,812 - 43,544,488 (-)NCBIMGSCv36mm8
Celera443,548,571 - 43,557,214 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map423.05NCBI
Tpm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955472611,028 - 617,821 (+)Ensembl
ChiLan1.0NW_004955472611,079 - 617,823 (+)NCBIChiLan1.0ChiLan1.0
TPM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21188,896,692 - 88,905,357 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1988,903,269 - 88,911,296 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0935,533,982 - 35,542,033 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1936,336,307 - 36,345,394 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl936,336,307 - 36,345,394 (-)EnsemblpanPan2panpan1.1
TPM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11152,212,372 - 52,219,947 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1152,212,401 - 52,219,923 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1150,779,956 - 50,787,531 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01153,277,326 - 53,284,901 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1153,277,355 - 53,284,866 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11151,821,901 - 51,829,478 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01151,805,386 - 51,812,960 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01152,507,526 - 52,515,101 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tpm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947167,132,139 - 167,140,168 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365243,679,560 - 3,688,308 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365243,679,719 - 3,687,828 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TPM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1236,402,251 - 236,410,905 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11236,402,249 - 236,410,390 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21264,127,284 - 264,135,301 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap1q23-q27NCBI
TPM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11244,912,250 - 44,920,615 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1244,912,223 - 44,919,456 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603842,015,821 - 42,025,459 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tpm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248685,101,090 - 5,109,820 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248685,101,713 - 5,109,560 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tpm2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v112,972,768 - 2,982,089 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tpm2
60 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:198
Count of miRNA genes:135
Interacting mature miRNAs:152
Transcripts:ENSRNOT00000022801, ENSRNOT00000049000
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53801167083011670Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)55266537294894052Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)53275164977751649Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)53800433183004331Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)52367149379046465Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51757663362576633Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53801167083011670Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53801167083011670Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)539019942102105896Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)53331167378311673Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)53275164977751649Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)53998594884985948Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53331167378311673Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)53952692484526924Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54852312391770353Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)560511627105511627Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5706553574335773Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52602321171023211Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)556546393101546393Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)52367149368671493Rat

Markers in Region
RH127874  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8562,566,829 - 62,567,184 (+)Marker Load Pipeline
mRatBN7.2557,771,041 - 57,771,396 (+)MAPPERmRatBN7.2
Rnor_6.0559,016,739 - 59,017,093NCBIRnor6.0
Rnor_5.0563,541,333 - 63,541,687UniSTSRnor5.0
RGSC_v3.4559,994,219 - 59,994,573UniSTSRGSC3.4
Celera556,351,594 - 56,351,948UniSTS
RH 3.4 Map5394.8UniSTS
Cytogenetic Map5q22UniSTS
BI277374  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2557,771,921 - 57,772,126 (+)MAPPERmRatBN7.2
Rnor_6.0559,017,619 - 59,017,823NCBIRnor6.0
Rnor_5.0563,542,213 - 63,542,417UniSTSRnor5.0
RGSC_v3.4559,995,099 - 59,995,303UniSTSRGSC3.4
Celera556,352,474 - 56,352,678UniSTS
RH 3.4 Map5394.8UniSTS
Cytogenetic Map5q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 85 59 6 349 185 11 140 81 92 31 16 16

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001024345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001301235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC090009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF110059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV796622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ118075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000022801   ⟹   ENSRNOP00000022801
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl562,566,652 - 62,575,663 (-)Ensembl
mRatBN7.2 Ensembl557,770,864 - 57,779,875 (-)Ensembl
Rnor_6.0 Ensembl559,017,575 - 59,025,631 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000049000   ⟹   ENSRNOP00000044473
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl562,566,713 - 62,575,726 (-)Ensembl
mRatBN7.2 Ensembl557,770,924 - 57,779,992 (-)Ensembl
Rnor_6.0 Ensembl559,016,622 - 59,025,631 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093971   ⟹   ENSRNOP00000083091
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl557,771,156 - 57,779,861 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102327   ⟹   ENSRNOP00000080861
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl562,566,652 - 62,575,663 (-)Ensembl
mRatBN7.2 Ensembl557,770,864 - 57,779,875 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114391   ⟹   ENSRNOP00000091881
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl557,771,877 - 57,779,992 (-)Ensembl
RefSeq Acc Id: NM_001024345   ⟹   NP_001019516
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8562,566,712 - 62,575,726 (-)NCBI
mRatBN7.2557,770,924 - 57,779,938 (-)NCBI
Rnor_6.0559,016,621 - 59,025,631 (-)NCBI
Rnor_5.0563,541,215 - 63,550,146 (-)NCBI
RGSC_v3.4559,994,101 - 60,003,261 (-)RGD
Celera556,351,476 - 56,360,486 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001301235   ⟹   NP_001288164
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8562,567,665 - 62,575,726 (-)NCBI
mRatBN7.2557,771,877 - 57,779,938 (-)NCBI
Rnor_6.0559,017,574 - 59,025,631 (-)NCBI
Celera556,352,429 - 56,360,486 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008763680   ⟹   XP_008761902
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8562,566,712 - 62,576,066 (-)NCBI
mRatBN7.2557,770,919 - 57,780,278 (-)NCBI
Rnor_6.0559,016,616 - 59,025,971 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008763681   ⟹   XP_008761903
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8562,566,712 - 62,576,066 (-)NCBI
mRatBN7.2557,771,877 - 57,780,278 (-)NCBI
Rnor_6.0559,017,574 - 59,025,971 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001019516   ⟸   NM_001024345
- Peptide Label: isoform Tpm2.1sm/cy
- UniProtKB: Q5FVG5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008761902   ⟸   XM_008763680
- Peptide Label: isoform X1
- UniProtKB: A6IJ28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008761903   ⟸   XM_008763681
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001288164   ⟸   NM_001301235
- Peptide Label: isoform Tpm2.2st
- UniProtKB: P06395 (UniProtKB/Swiss-Prot),   P58775 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022801   ⟸   ENSRNOT00000022801
Ensembl Acc Id: ENSRNOP00000044473   ⟸   ENSRNOT00000049000
Ensembl Acc Id: ENSRNOP00000080861   ⟸   ENSRNOT00000102327
Ensembl Acc Id: ENSRNOP00000091881   ⟸   ENSRNOT00000114391
Ensembl Acc Id: ENSRNOP00000083091   ⟸   ENSRNOT00000093971

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P58775-F1-model_v2 AlphaFold P58775 1-284 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693677
Promoter ID:EPDNEW_R4202
Type:initiation region
Name:Tpm2_1
Description:tropomyosin 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0559,025,568 - 59,025,628EPDNEW
RGD ID:6849480
Promoter ID:EP25019
Type:single initiation site
Name:RN_TPM1
Description:Tropomyosin-beta (skeletal muscle beta)
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Notes:homology_group=Homology group 140; Mammalian tropomyosin beta
Experiment Methods:Nuclease protection; Primer extension
Regulation:skel (repressed by or weakly expressed in) m., smooth muscle, fibroblasts
Position:
Rat AssemblyChrPosition (strand)Source
RGSC_v3.4560,003,279 - 60,003,339EPD

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559479 AgrOrtholog
BioCyc Gene G2FUF-41506 BioCyc
Ensembl Genes ENSRNOG00000016731 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000022801 ENTREZGENE
  ENSRNOT00000022801.7 UniProtKB/Swiss-Prot
  ENSRNOT00000049000 ENTREZGENE
  ENSRNOT00000049000.7 UniProtKB/Swiss-Prot
  ENSRNOT00000102327 ENTREZGENE
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot
  1.20.5.340 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7324151 IMAGE-MGC_LOAD
InterPro Tropomyosin UniProtKB/Swiss-Prot
KEGG Report rno:500450 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109519 IMAGE-MGC_LOAD
NCBI Gene 500450 ENTREZGENE
PANTHER TROPOMYOSIN UniProtKB/Swiss-Prot
Pfam Tropomyosin UniProtKB/Swiss-Prot
PhenoGen Tpm2 PhenoGen
PRINTS TROPOMYOSIN UniProtKB/Swiss-Prot
PROSITE TROPOMYOSIN UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000016731 RatGTEx
Superfamily-SCOP Tropomyosin UniProtKB/Swiss-Prot
UniProt A0A8I5ZR83_RAT UniProtKB/TrEMBL
  A6IJ28 ENTREZGENE, UniProtKB/TrEMBL
  P06395 ENTREZGENE
  P58775 ENTREZGENE
  Q5FVG5 ENTREZGENE, UniProtKB/TrEMBL
  TPM2_RAT UniProtKB/Swiss-Prot
UniProt Secondary P02560 UniProtKB/Swiss-Prot
  P06395 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-12 Tpm2  tropomyosin 2  Tpm2  tropomyosin 2, beta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-10-22 Tpm2  tropomyosin 2, beta  Tpm2  tropomyosin 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Tpm2  tropomyosin 2  MGC109519  similar to tropomyosin 1, embryonic fibroblast - rat  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 MGC109519  similar to tropomyosin 1, embryonic fibroblast - rat      Symbol and Name status set to provisional 70820 PROVISIONAL