Trpc7 (transient receptor potential cation channel, subfamily C, member 7) - Rat Genome Database

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Gene: Trpc7 (transient receptor potential cation channel, subfamily C, member 7) Mus musculus
Analyze
Symbol: Trpc7
Name: transient receptor potential cation channel, subfamily C, member 7
RGD ID: 1551250
MGI Page MGI
Description: Predicted to enable inositol 1,4,5 trisphosphate binding activity and store-operated calcium channel activity. Predicted to be involved in calcium ion transmembrane transport; regulation of cytosolic calcium ion concentration; and single fertilization. Predicted to act upstream of or within monoatomic ion transmembrane transport. Predicted to be located in perinuclear region of cytoplasm. Predicted to be part of cation channel complex. Predicted to be active in plasma membrane. Is expressed in cerebral cortex; ganglia; heart; skeletal muscle; and trunk somite. Human ortholog(s) of this gene implicated in lung cancer. Orthologous to human TRPC7 (transient receptor potential cation channel subfamily C member 7).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: mTRP7; short transient receptor potential channel 7; TR; transient receptor potential protein homologue TRP7; transient receptor protein 7; transient receptor protein 8; TRP-7; TRP7; Trrp8
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391356,920,911 - 57,043,778 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1356,920,926 - 57,043,806 (-)EnsemblGRCm39 Ensembl
GRCm381356,773,098 - 56,895,968 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1356,773,113 - 56,895,993 (-)EnsemblGRCm38mm10GRCm38
MGSCv371356,874,469 - 56,996,949 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361356,782,730 - 56,905,210 (-)NCBIMGSCv36mm8
Celera1357,827,818 - 57,952,905 (-)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1330.27NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Identification of TRPCs genetic variants that modify risk for lung cancer based on the pathway and two-stage study. Zhang Z, etal., Meta Gene. 2016 Jul 8;9:191-6. doi: 10.1016/j.mgene.2016.07.005. eCollection 2016 Sep.
Additional References at PubMed
PMID:10349636   PMID:10488066   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11805119   PMID:12466851   PMID:12477932   PMID:15336983   PMID:16141072   PMID:16141073   PMID:16460286  
PMID:17480026   PMID:18989690   PMID:19322198   PMID:19521566   PMID:19834762   PMID:20059953   PMID:20351294   PMID:21261756   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22051675  
PMID:22411552   PMID:23529130   PMID:25049394   PMID:25471572   PMID:27177420   PMID:28526717   PMID:30017393   PMID:30270038   PMID:30786075   PMID:31755176   PMID:32350291   PMID:33884443  
PMID:33941260   PMID:34321999   PMID:34828338   PMID:36257322   PMID:36592529  


Genomics

Comparative Map Data
Trpc7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391356,920,911 - 57,043,778 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1356,920,926 - 57,043,806 (-)EnsemblGRCm39 Ensembl
GRCm381356,773,098 - 56,895,968 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1356,773,113 - 56,895,993 (-)EnsemblGRCm38mm10GRCm38
MGSCv371356,874,469 - 56,996,949 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361356,782,730 - 56,905,210 (-)NCBIMGSCv36mm8
Celera1357,827,818 - 57,952,905 (-)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1330.27NCBI
TRPC7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385136,212,745 - 136,365,545 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5136,212,745 - 136,365,545 (-)EnsemblGRCh38hg38GRCh38
GRCh375135,548,433 - 135,701,233 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365135,577,022 - 135,720,974 (-)NCBINCBI36Build 36hg18NCBI36
Build 345135,577,021 - 135,720,972NCBI
Celera5131,673,736 - 131,825,919 (-)NCBICelera
Cytogenetic Map5q31.1NCBI
HuRef5130,737,474 - 130,889,316 (-)NCBIHuRef
CHM1_15134,981,614 - 135,133,762 (-)NCBICHM1_1
T2T-CHM13v2.05136,735,275 - 136,888,049 (-)NCBIT2T-CHM13v2.0
Trpc7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8177,707,954 - 7,839,064 (+)NCBIGRCr8
mRatBN7.2177,708,911 - 7,833,435 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl177,709,583 - 7,833,435 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx177,728,782 - 7,851,532 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0179,261,227 - 9,383,024 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0177,725,168 - 7,847,919 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0178,134,267 - 8,280,360 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,135,251 - 8,279,515 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01710,316,554 - 10,456,609 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41713,660,133 - 13,781,358 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11713,749,821 - 13,771,093 (+)NCBI
Celera177,806,368 - 7,928,485 (+)NCBICelera
Cytogenetic Map17p14NCBI
Trpc7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540831,261,421 - 31,416,108 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540831,260,767 - 31,408,852 (-)NCBIChiLan1.0ChiLan1.0
TRPC7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24131,499,891 - 131,652,824 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15129,639,451 - 129,792,384 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05131,604,175 - 131,756,944 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15137,743,638 - 137,896,107 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5137,743,638 - 137,896,107 (-)Ensemblpanpan1.1panPan2
TRPC7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11124,113,128 - 24,256,998 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1124,113,932 - 24,252,989 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1122,859,569 - 23,003,547 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01124,928,881 - 25,072,881 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1124,929,609 - 25,069,230 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11123,647,009 - 23,790,666 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01123,483,142 - 23,627,149 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01124,131,869 - 24,275,920 (-)NCBIUU_Cfam_GSD_1.0
Trpc7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213124,274,159 - 124,418,976 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365973,298,984 - 3,443,796 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365973,298,968 - 3,470,863 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPC7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2138,373,189 - 138,510,728 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12138,373,972 - 138,502,280 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22143,969,145 - 144,151,823 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRPC7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12338,957,128 - 39,098,615 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603438,814,605 - 38,955,676 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trpc7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473310,703,428 - 10,900,054 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473310,703,295 - 10,900,206 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trpc7
4545 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3287
Count of miRNA genes:651
Interacting mature miRNAs:807
Transcripts:ENSMUST00000022023, ENSMUST00000109871, ENSMUST00000151918, ENSMUST00000173067, ENSMUST00000173466, ENSMUST00000173513, ENSMUST00000173817, ENSMUST00000174457
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
1301015Sysbp2_msystolic blood pressure 2 (mouse)Not determined132047761259821605Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
4142489Ath25_matherosclerosis 25 (mouse)Not determined2583652959836529Mouse
10401111Pgia40_mproteoglycan induced arthritis 40 (mouse)Not determined132791846961918560Mouse
1300710Pcd4ts2_mp-glycoprotein positive CD4 T cell subset 2 (mouse)Not determined132821044262210544Mouse
1357802Vtbt15_mvertebral trabecular bone trait 15 (mouse)Not determined132821737962217515Mouse
10045621Heal21_mwound healing/regeneration 21 (mouse)Not determined132821737962217515Mouse
10755533Chol18_mcholesterol 18 (mouse)133096946764969467Mouse
10755517Chol15_mcholesterol 15 (mouse)133096946764969467Mouse
12738439Twq4_mtestis weight QTL 4 (mouse)133112911065129110Mouse
14696729Kidlq2_mkidney weight, left QTL 2 (mouse)133134473665344736Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133492194368922081Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133610153070101640Mouse
1301734Acsns2_mAngiostrongylus costaricensis nematode susceptibility 2 (mouse)Not determined133610153070101640Mouse
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133614482070144904Mouse
1300862Cfbw5_mcystic fibrosis body weight 5 (mouse)Not determined133872035872720517Mouse
1300985Bmd13_mbone mineral density 13 (mouse)Not determined133962924973629397Mouse
1302157Bwem2_mbody weight day 30 males 2 (mouse)Not determined133962924973629397Mouse
1301801Cpfd5_mcerebellum pattern fissures (mouse)Not determined133962924973629397Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
26884396Humsd4_mhumerus midshaft diameter 4, 10 week (mouse)134785347673148119Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5031841184318559Mouse
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135031841184318559Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135061682884617027Mouse
14746975Manh74_mmandible shape 74 (mouse)135247726986477269Mouse
1302073Pgct1_mprimordial germ cell tumor locus 1 (mouse)Not determined135382078387820897Mouse
1357563Bmch6_mbone mechanical trait 6 (mouse)Not determined135538498089385140Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
1558850Sgp3_mserum gp70 production 3 (mouse)Not determined135647045676971314Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135662924996239162Mouse

Markers in Region
BB254000  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381356,773,304 - 56,773,412UniSTSGRCm38
MGSCv371356,874,665 - 56,874,773UniSTSGRCm37
Celera1357,828,012 - 57,828,124UniSTS
Cytogenetic Map13B2UniSTS
Whitehead/MRC_RH13583.19UniSTS
D13Mit185  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381356,829,432 - 56,829,580UniSTSGRCm38
MGSCv371356,930,793 - 56,930,941UniSTSGRCm37
Celera1357,887,010 - 57,887,162UniSTS
Cytogenetic Map13B2UniSTS
cM Map1335.0UniSTS
Whitehead Genetic1321.9UniSTS
Whitehead/MRC_RH13578.74UniSTS
Trpc7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13B2UniSTS
cM Map13 UniSTS
Trpc7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13B2UniSTS
cM Map13 UniSTS
Trpc7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13B2UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000022023   ⟹   ENSMUSP00000022023
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1356,920,926 - 57,043,550 (-)Ensembl
GRCm38.p6 Ensembl1356,773,113 - 56,895,737 (-)Ensembl
RefSeq Acc Id: ENSMUST00000109871   ⟹   ENSMUSP00000105497
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1356,920,926 - 57,043,589 (-)Ensembl
GRCm38.p6 Ensembl1356,773,113 - 56,895,776 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151918   ⟹   ENSMUSP00000119809
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1356,921,083 - 57,043,602 (-)Ensembl
GRCm38.p6 Ensembl1356,773,270 - 56,895,789 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173067   ⟹   ENSMUSP00000134481
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1356,921,577 - 57,035,929 (-)Ensembl
GRCm38.p6 Ensembl1356,773,764 - 56,888,116 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173466   ⟹   ENSMUSP00000134285
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1356,921,577 - 57,035,929 (-)Ensembl
GRCm38.p6 Ensembl1356,773,764 - 56,888,116 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173513   ⟹   ENSMUSP00000134662
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1356,921,577 - 57,035,929 (-)Ensembl
GRCm38.p6 Ensembl1356,773,764 - 56,888,116 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173817   ⟹   ENSMUSP00000133411
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1356,921,577 - 57,043,806 (-)Ensembl
GRCm38.p6 Ensembl1356,773,764 - 56,895,993 (-)Ensembl
RefSeq Acc Id: ENSMUST00000174457   ⟹   ENSMUSP00000133305
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1356,921,577 - 57,043,550 (-)Ensembl
GRCm38.p6 Ensembl1356,773,764 - 56,895,737 (-)Ensembl
RefSeq Acc Id: NM_001302372   ⟹   NP_001289301
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391356,920,911 - 57,043,602 (-)NCBI
GRCm381356,773,098 - 56,895,789 (-)NCBI
Celera1357,827,808 - 57,953,106 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001302373   ⟹   NP_001289302
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391356,920,911 - 57,043,602 (-)NCBI
GRCm381356,773,098 - 56,895,789 (-)NCBI
Celera1357,827,808 - 57,953,106 (-)NCBI
Sequence:
RefSeq Acc Id: NM_012035   ⟹   NP_036165
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391356,920,911 - 57,043,602 (-)NCBI
GRCm381356,773,098 - 56,895,789 (-)NCBI
MGSCv371356,874,469 - 56,996,949 (-)RGD
Celera1357,827,808 - 57,953,106 (-)NCBI
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006517262   ⟹   XP_006517325
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391356,920,948 - 57,043,772 (-)NCBI
GRCm381356,773,509 - 56,895,963 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006517263   ⟹   XP_006517326
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391356,920,948 - 57,043,774 (-)NCBI
GRCm381356,773,509 - 56,895,965 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006517264   ⟹   XP_006517327
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391356,920,948 - 57,043,771 (-)NCBI
GRCm381356,773,509 - 56,895,963 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158059   ⟹   XP_036013952
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391356,920,948 - 57,043,772 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001780787
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391356,920,948 - 57,043,778 (-)NCBI
GRCm381356,773,509 - 56,895,968 (-)NCBI
Sequence:
RefSeq Acc Id: NP_036165   ⟸   NM_012035
- Peptide Label: isoform 1
- UniProtKB: Q9WVC5 (UniProtKB/Swiss-Prot),   Q0VFY2 (UniProtKB/TrEMBL),   Q3UXW9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006517326   ⟸   XM_006517263
- Peptide Label: isoform X3
- UniProtKB: G3UWT1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006517327   ⟸   XM_006517264
- Peptide Label: isoform X4
- UniProtKB: G3UZW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006517325   ⟸   XM_006517262
- Peptide Label: isoform X1
- UniProtKB: G3UWI6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001289301   ⟸   NM_001302372
- Peptide Label: isoform 2
- UniProtKB: E9PVJ9 (UniProtKB/TrEMBL),   Q3UXW9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001289302   ⟸   NM_001302373
- Peptide Label: isoform 3 precursor
- UniProtKB: Q3UXW9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000119809   ⟸   ENSMUST00000151918
RefSeq Acc Id: ENSMUSP00000133305   ⟸   ENSMUST00000174457
RefSeq Acc Id: ENSMUSP00000022023   ⟸   ENSMUST00000022023
RefSeq Acc Id: ENSMUSP00000134662   ⟸   ENSMUST00000173513
RefSeq Acc Id: ENSMUSP00000134285   ⟸   ENSMUST00000173466
RefSeq Acc Id: ENSMUSP00000134481   ⟸   ENSMUST00000173067
RefSeq Acc Id: ENSMUSP00000105497   ⟸   ENSMUST00000109871
RefSeq Acc Id: ENSMUSP00000133411   ⟸   ENSMUST00000173817
RefSeq Acc Id: XP_036013952   ⟸   XM_036158059
- Peptide Label: isoform X2
- UniProtKB: G3UWI6 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WVC5-F1-model_v2 AlphaFold Q9WVC5 1-862 view protein structure

Promoters
RGD ID:8680514
Promoter ID:EPDNEW_M18288
Type:multiple initiation site
Name:Trpc7_1
Description:Mus musculus transient receptor potential cation channel, subfamilyC, member 7 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381356,895,786 - 56,895,846EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1349470 AgrOrtholog
Ensembl Genes ENSMUSG00000021541 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000022023 ENTREZGENE
  ENSMUST00000022023.13 UniProtKB/Swiss-Prot
  ENSMUST00000109871 ENTREZGENE
  ENSMUST00000109871.8 UniProtKB/TrEMBL
  ENSMUST00000151918 ENTREZGENE
  ENSMUST00000151918.8 UniProtKB/TrEMBL
  ENSMUST00000173067.9 UniProtKB/TrEMBL
  ENSMUST00000173466.3 UniProtKB/TrEMBL
  ENSMUST00000173513 ENTREZGENE
  ENSMUST00000173513.9 UniProtKB/TrEMBL
  ENSMUST00000173817 ENTREZGENE
  ENSMUST00000173817.9 UniProtKB/TrEMBL
  ENSMUST00000174457 ENTREZGENE
  ENSMUST00000174457.9 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRPC7_channel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRPC_channel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:26946 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1349470 ENTREZGENE
NCBI Gene 26946 ENTREZGENE
PANTHER PTHR10117 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10117:SF9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trpc7 PhenoGen
PRINTS TRNSRECEPTRP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRPCHANNEL7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D6RI84_MOUSE UniProtKB/TrEMBL
  E9PVJ9 ENTREZGENE, UniProtKB/TrEMBL
  G3UWI6 ENTREZGENE, UniProtKB/TrEMBL
  G3UWT1 ENTREZGENE, UniProtKB/TrEMBL
  G3UYZ6_MOUSE UniProtKB/TrEMBL
  G3UZF9_MOUSE UniProtKB/TrEMBL
  G3UZW6 ENTREZGENE, UniProtKB/TrEMBL
  Q0VFY2 ENTREZGENE, UniProtKB/TrEMBL
  Q3UXW9 ENTREZGENE, UniProtKB/TrEMBL
  Q9WVC5 ENTREZGENE, UniProtKB/Swiss-Prot