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Gene: Cfap20dc (CFAP20 domain containing) Rattus norvegicus

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Symbol:

Cfap20dc

Name:

CFAP20 domain containing

RGD ID:

1359720

Description:

Orthologous to human CFAP20DC (CFAP20 domain containing); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; paracetamol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC361016; LOC108353018; LOC361016; MGC116196; similar to RIKEN cDNA 4933406L09; uncharacterized LOC108353018; uncharacterized protein C3orf67 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CFAP20DC (CFAP20 domain containing)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Cfap20dc (CFAP20 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cfap20dc (CFAP20 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CFAP20DC (CFAP20 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CFAP20DC (CFAP20 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cfap20dc (CFAP20 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CFAP20DC (CFAP20 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CFAP20DC (CFAP20 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cfap20dc (CFAP20 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cfap20dc (CFAP20 domain containing)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	NIT1 (nitrilase 1)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Cfap20dc (CFAP20 domain containing)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CFAP20DC (CFAP20 domain containing)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zgc:162324	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cfap20dc	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cfap20dc	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	18,661,562 - 18,907,226 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	18,661,508 - 18,907,225 (+)	Ensembl				GRCr8
mRatBN7.2	15	16,231,248 - 16,476,978 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	16,231,299 - 16,476,977 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	18,415,735 - 18,646,000 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	19,374,157 - 19,604,439 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	17,629,047 - 17,859,343 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	17,664,838 - 17,918,216 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	17,775,692 - 17,924,302 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	21,650,745 - 21,899,251 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	18,179,678 - 18,445,897 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	16,199,391 - 16,434,663 (+)	NCBI		Celera
RGSC_v3.1	15	18,179,677 - 18,445,896 (+)	NCBI
Cytogenetic Map	15	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-palmitoylglycerol (ISO)

3,4-dichloroaniline (ISO)

Aflatoxin B2 alpha (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

diuron (ISO)

dorsomorphin (ISO)

methylmercury chloride (ISO)

N-Nitrosopyrrolidine (ISO)

O-methyleugenol (ISO)

ozone (ISO)

paracetamol (EXP)

phenylmercury acetate (ISO)

SB 431542 (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

Triptolide (ISO)

valproic acid (ISO)

vorinostat (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data

Cfap20dc
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	18,661,562 - 18,907,226 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	18,661,508 - 18,907,225 (+)	Ensembl				GRCr8
mRatBN7.2	15	16,231,248 - 16,476,978 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	16,231,299 - 16,476,977 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	18,415,735 - 18,646,000 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	19,374,157 - 19,604,439 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	17,629,047 - 17,859,343 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	17,664,838 - 17,918,216 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	17,775,692 - 17,924,302 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	21,650,745 - 21,899,251 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	18,179,678 - 18,445,897 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	16,199,391 - 16,434,663 (+)	NCBI		Celera
RGSC_v3.1	15	18,179,677 - 18,445,896 (+)	NCBI
Cytogenetic Map	15	p14	NCBI

CFAP20DC
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	58,716,173 - 59,050,025 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	58,717,365 - 59,050,084 (-)	Ensembl			hg38	GRCh38
GRCh37	3	58,727,735 - 59,035,751 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	58,702,777 - 59,010,755 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	3	58,741,188 - 59,049,142 (-)	NCBI		Celera
Cytogenetic Map	3	p14.2	NCBI
HuRef	3	58,824,962 - 59,132,603 (-)	NCBI		HuRef
CHM1_1	3	58,677,889 - 58,985,898 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	58,756,584 - 59,090,440 (-)	NCBI		T2T-CHM13v2.0

Cfap20dc
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	13,803,434 - 14,038,602 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	13,803,533 - 14,038,581 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	8,431,171 - 8,666,336 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	8,431,192 - 8,666,240 (-)	Ensembl			mm10	GRCm38
MGSCv37	14	9,263,686 - 9,498,804 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	7,224,978 - 7,460,026 (-)	NCBI		MGSCv36	mm8
Celera	14	4,051,385 - 4,288,490 (-)	NCBI		Celera
Cytogenetic Map	14	A1	NCBI
cM Map	14	4.87	NCBI

Cfap20dc
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955430	1,216,453 - 1,472,629 (+)	Ensembl
ChiLan1.0	NW_004955430	1,216,453 - 1,472,083 (+)	NCBI	ChiLan1.0	ChiLan1.0

CFAP20DC
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	58,679,137 - 59,006,147 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	58,683,912 - 59,010,922 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	58,665,014 - 58,970,818 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	60,071,826 - 60,377,218 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	60,079,753 - 60,265,114 (-)	Ensembl			panPan2	panpan1.1

CFAP20DC
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	31,702,641 - 31,946,195 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	31,702,930 - 31,946,191 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	31,628,020 - 31,871,418 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	31,946,166 - 32,189,730 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	31,946,037 - 32,189,750 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	31,427,752 - 31,670,542 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	31,783,070 - 32,030,037 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	31,954,950 - 32,198,521 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cfap20dc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	168,987,174 - 169,207,031 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	2,125,776 - 2,345,648 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	2,125,824 - 2,345,581 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CFAP20DC
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	40,486,282 - 40,768,623 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	40,486,288 - 40,768,622 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	44,959,717 - 44,990,648 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CFAP20DC
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	20,041,247 - 20,326,542 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	20,098,706 - 20,326,354 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	146,478,759 - 146,779,724 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cfap20dc
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624822	5,718,639 - 5,958,682 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624822	5,718,400 - 5,959,101 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cfap20dc
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	12	78,849,291 - 79,089,929 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cfap20dc
1830 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	149
Count of miRNA genes:	124
Interacting mature miRNAs:	132
Transcripts:	ENSRNOT00000061169
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1641913	Colcr2	Colorectal carcinoma resistance QTL 2	6.57	0.0197	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	15	2315759	47315759	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	2785923	47785923	Rat
5684946	Bss98	Bone structure and strength QTL 98	3.9	0.0026	tibia strength trait (VT:1000284)	tibia ultimate force (CMO:0001734)	15	1	39411584	Rat
1354657	Despr13	Despair related QTL 13		0.0022	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	15	1	32342855	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	14926594	71614418	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	44836456	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2315759	53331089	Rat
5685002	Bss103	Bone structure and strength QTL 103	2.8		tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	15	16911521	32439851	Rat

Markers in Region

BF416962

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	16,426,945 - 16,427,097 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	17,874,429 - 17,874,580	NCBI	Rnor6.0
Rnor_5.0	15	21,856,889 - 21,857,040	UniSTS	Rnor5.0
RGSC_v3.4	15	18,401,673 - 18,401,824	UniSTS	RGSC3.4
Celera	15	16,390,910 - 16,391,061	UniSTS
RH 3.4 Map	15	94.6	UniSTS
Cytogenetic Map	15	p14	UniSTS

AW526395

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	16,466,910 - 16,467,081 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	17,914,236 - 17,914,406	NCBI	Rnor6.0
Rnor_5.0	15	21,895,271 - 21,895,441	UniSTS	Rnor5.0
RGSC_v3.4	15	18,441,917 - 18,442,087	UniSTS	RGSC3.4
Celera	15	16,430,683 - 16,430,853	UniSTS
RH 3.4 Map	15	111.3	UniSTS
Cytogenetic Map	15	p14	UniSTS

BE107599

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	15	18,827,649 - 18,827,847 (+)	Marker Load Pipeline
mRatBN7.2	15	16,397,394 - 16,397,592 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	17,844,881 - 17,845,078	NCBI	Rnor6.0
Rnor_5.0	15	21,827,341 - 21,827,538	UniSTS	Rnor5.0
RGSC_v3.4	15	18,372,124 - 18,372,321	UniSTS	RGSC3.4
Celera	15	16,361,369 - 16,361,566	UniSTS
RH 3.4 Map	15	111.1	UniSTS
Cytogenetic Map	15	p14	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	11	67	165	78	77	46	61	46	6	311	161	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431639	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431640	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431642	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_197236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC086559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC098040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000061169 ⟹ ENSRNOP00000057881

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	18,661,562 - 18,901,138 (+)	Ensembl
mRatBN7.2 Ensembl	15	16,231,299 - 16,470,890 (+)	Ensembl
Rnor_6.0 Ensembl	15	17,775,692 - 17,918,129 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000085530 ⟹ ENSRNOP00000070228

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	18,661,508 - 18,907,225 (+)	Ensembl
mRatBN7.2 Ensembl	15	16,231,299 - 16,476,977 (+)	Ensembl
Rnor_6.0 Ensembl	15	17,834,635 - 17,924,302 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098727 ⟹ ENSRNOP00000084249

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	18,661,508 - 18,907,225 (+)	Ensembl
mRatBN7.2 Ensembl	15	16,231,299 - 16,476,977 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105455 ⟹ ENSRNOP00000095622

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	18,661,508 - 18,885,560 (+)	Ensembl
mRatBN7.2 Ensembl	15	16,231,299 - 16,445,491 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000125508 ⟹ ENSRNOP00000100356

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	18,661,508 - 18,880,026 (+)	Ensembl

RefSeq Acc Id:

NM_001014137 ⟹ NP_001014159

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	18,661,562 - 18,901,139 (+)	NCBI
mRatBN7.2	15	16,231,299 - 16,470,891 (+)	NCBI
Rnor_6.0	15	17,664,838 - 17,918,216 (+)	NCBI
Rnor_5.0	15	21,650,745 - 21,899,251 (+)	NCBI
RGSC_v3.4	15	18,179,678 - 18,445,897 (+)	RGD
Celera	15	16,199,391 - 16,434,663 (+)	RGD

Sequence:

show sequence

CACAGTCACTCTGTCGGCGGAGCCCGCAGGCCGCTGTGCCATCCCTGCCGCGGCTCCCCGAGCC
GGGACCACCATGGCGCGGGTCGGCGGCTGGAGGCTCAGCTGACTGCAGGCGCGAGGTACCGAGG
CGAGCCCGAGCCAGCGGGCACAGAGCCAGCTCTGCCGGTCCATCTCCAGCCGGCAAACTCTGCC
TGCCAAACCCAGGGCCCTCTGCGGGAATGTTCAAAAATGAGTACCAGGGAGGCGCATTTGTTGA
AATTTTTAGCGCTCAGGGGAAAAATCCTGGAGCAAAGTGGAAGATCTTGGGCAGTCCATCTGTG
ATCTGGAAAGAGTTTGATAAAGAAGTTAAAAGCTTTGTGTTTGTCCTGGAAGGCAGCAGCCAAA
CCAACAGAATCCAGTTGCCGAAGGAGAATAAGCAAATCCTTGGACTGATCCAGAGGTTTCTTGT
GCTACAGATTTACGTGCCCCTGGGACAGGACTTCTCCACCGAATTACTAATTACTGACTTAGGA
AACATCAAAAGAAGGTTGTATTTATCAACAGTCCATAAGGAAGTGTCTTCAACACCTCTTCACG
CAAAAATCCCACTCTTCATGATCAAGCGTAAAATCTGGTGCAATCTGTGCATTGACCTGGTCGC
CTTCACCAGTGAGATATTCAAAGGAGCAGTTTTCCAGTCGCTGGATGGAATTATCGTCTCTGCT
AACTGTAAGCTGCGGAAGATCTTCACTTTGAAATTCAAGCCTCGAGAGACGGCCGATAGAGACG
ATGAACCCGCAGATATTATTCCACGAAGCTGTCAACTCGCAACAGATGTTCCGCATGTCACACA
GCTGCTTAACATGACAAAACTTCGCCAAACTGAAATTAAATTTGGAGGTCATCCTCTAAGATCT
GCAGAATCAGACCAGTTCATCAGCAGCAGAGCAGGCAGTGTCCGGAGCAGTAAAAGTCAAGATG
TCTGCCACATTGCCTTTGGGTCCAGGGTTCTTGGACCACCTCCACCCTCTGGCAGACGGAATAA
CCTAAGGCTTTCCGCTGAGACAGTGAGATCCATTGGGTACAAAAATAACCAGTCGTGCCAGCAG
CCTGCGGAAGAGAAGCATGTTAACAGTGCAGACACATCAGCCTTGCTGATACCTCTGTCTGAAC
AGCAAGGAGAGAAAGGAAGTTCTCACCCCGTGAAGCAGACCACGCCTCTACCTGCCAGTCTCCC
TACTCCATATCCACATCCCCCTCGAGACCCGTCAGCAGATAAGGGTAGCAGCAGAAGAGGACTT
GGCCTAAGGAGCAGCAGTGGAAGCAGGACAGAGGCGCGCTGTGGGAGTTCCTCAGGAAATAGCA
GGAGTGAAGAAGACGTAGCCATGGCCGCCAACAATCTCACACAGCTGACGACAGAGCCAGTGAG
AGCCAGCACTCCAGAACCCCCGGCTGCTGAACCACCAGATGAGTGGATATTCCCTGAAAGCAGT
GGCCCACCCTCCGGCGCAGCAGGTAGCAGCTCATCTTTGCTCCTAGATGGGGACTCCCGTACCG
CATCACACCTGTGGCTCGAAACCAGCAAGGACAGTGACCCTGACCAGGCAGAGGGAACCCAGAT
GGCTCCCAAGGACATTTTCACCTTTTCGTCCAGACCAAGATCAGCGCCTCATGGGAAGAGTCAC
GATCTGTCCCCCACGGGGTGCCCATGTATTCTGGACCCAAAAGAGGACAGCCGAGTGACCAAGG
GAGACACCGAGTTGGAAGACGATTTTTATGGCAGTGACAGCAGCGAAGAGGAATACAACTGGAG
AAACTATCAGCCCAGCCAGATGAGCGAATCTGAGCTACAGATGCTGGCAAGCCTCAGGCGGCAG
CAGAATGAAGACCTAGAGGACACCGGGGCTCCTCATGGCCTGAGCGCATCCCAGGTGGACAACT
GTAATGTCAGCATCAGTACCAGCAGCGATGACACGACCACGTGGAACTCCTGTCTCCCACCTCC
TGTGAACCAAGGCCGTCACTATCAGAAAGAAATGAACCCCCCTTCTCCATCTAACCCTCGAGAC
TGGTTGAACATGTTGAGCCCACCAATTGTCCCTCCCAGTCAGCAGCCGCTGGAGCAGTCTCTGG
ACTCCTCTGCAAGTTTGAGTGTGCAAGGAGGAGCTCTGCTACTGACTCAGCCCCACCTCGCTTC
CTGTGCAGTTGGGTGTTAAAGACCCAGGGCCCATCTCGGGCTATGCTCATCCTGAAAGATCCCC
AGCTGGTTGTAAAATGCATCGAGTTTGCCCCATTTAACAGCAAAAAAAAAAAAAAAAAAAAAAA
AA

hide sequence

RefSeq Acc Id:

XM_039093454 ⟹ XP_038949382

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	18,661,644 - 18,907,226 (+)	NCBI
mRatBN7.2	15	16,231,262 - 16,476,978 (+)	NCBI

RefSeq Acc Id:

XM_039093459 ⟹ XP_038949387

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	18,661,644 - 18,837,240 (+)	NCBI
mRatBN7.2	15	16,231,248 - 16,406,985 (+)	NCBI

RefSeq Acc Id:

XM_039093461 ⟹ XP_038949389

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	18,661,644 - 18,855,740 (+)	NCBI
mRatBN7.2	15	16,231,250 - 16,425,487 (+)	NCBI

RefSeq Acc Id:

XM_063274380 ⟹ XP_063130450

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	18,661,644 - 18,907,226 (+)	NCBI

RefSeq Acc Id:

XM_063274381 ⟹ XP_063130451

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	18,661,644 - 18,887,663 (+)	NCBI

RefSeq Acc Id:

XM_063274382 ⟹ XP_063130452

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	18,661,644 - 18,907,226 (+)	NCBI

RefSeq Acc Id:

XM_063274383 ⟹ XP_063130453

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	18,661,644 - 18,907,226 (+)	NCBI

RefSeq Acc Id:

XM_063274384 ⟹ XP_063130454

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	18,661,644 - 18,837,240 (+)	NCBI

RefSeq Acc Id:

XM_063274385 ⟹ XP_063130455

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	18,682,841 - 18,907,226 (+)	NCBI

RefSeq Acc Id:

XM_063274386 ⟹ XP_063130456

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	18,661,644 - 18,855,740 (+)	NCBI

RefSeq Acc Id:

XM_063274387 ⟹ XP_063130457

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	18,661,644 - 18,855,745 (+)	NCBI

RefSeq Acc Id:

XM_063274388 ⟹ XP_063130458

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	18,661,644 - 18,855,745 (+)	NCBI

RefSeq Acc Id:

XM_063274389 ⟹ XP_063130459

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	18,661,644 - 18,818,762 (+)	NCBI

RefSeq Acc Id:

XM_063274390 ⟹ XP_063130460

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	18,661,644 - 18,814,947 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001014159	(Get FASTA)	NCBI Sequence Viewer
	NP_001418565	(Get FASTA)	NCBI Sequence Viewer
	NP_001418568	(Get FASTA)	NCBI Sequence Viewer
	NP_001418569	(Get FASTA)	NCBI Sequence Viewer
	NP_001418570	(Get FASTA)	NCBI Sequence Viewer
	NP_001418571	(Get FASTA)	NCBI Sequence Viewer
	XP_038949382	(Get FASTA)	NCBI Sequence Viewer
	XP_038949387	(Get FASTA)	NCBI Sequence Viewer
	XP_038949389	(Get FASTA)	NCBI Sequence Viewer
	XP_063130450	(Get FASTA)	NCBI Sequence Viewer
	XP_063130451	(Get FASTA)	NCBI Sequence Viewer
	XP_063130452	(Get FASTA)	NCBI Sequence Viewer
	XP_063130453	(Get FASTA)	NCBI Sequence Viewer
	XP_063130454	(Get FASTA)	NCBI Sequence Viewer
	XP_063130455	(Get FASTA)	NCBI Sequence Viewer
	XP_063130456	(Get FASTA)	NCBI Sequence Viewer
	XP_063130457	(Get FASTA)	NCBI Sequence Viewer
	XP_063130458	(Get FASTA)	NCBI Sequence Viewer
	XP_063130459	(Get FASTA)	NCBI Sequence Viewer
	XP_063130460	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH86559	(Get FASTA)	NCBI Sequence Viewer
	AAH98040	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000057881
	ENSRNOP00000057881.5
	ENSRNOP00000070228
	ENSRNOP00000084249
	ENSRNOP00000100356
GenBank Protein	Q4V7B1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001014159 ⟸ NM_001014137

- UniProtKB:

Q4V7B1 (UniProtKB/Swiss-Prot), A0A8I6API2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MFKNEYQGGAFVEIFSAQGKNPGAKWKILGSPSVIWKEFDKEVKSFVFVLEGSSQTNRIQLPKE
NKQILGLIQRFLVLQIYVPLGQDFSTELLITDLGNIKRRLYLSTVHKEVSSTPLHAKIPLFMIK
RKIWCNLCIDLVAFTSEIFKGAVFQSLDGIIVSANCKLRKIFTLKFKPRETADRDDEPADIIPR
SCQLATDVPHVTQLLNMTKLRQTEIKFGGHPLRSAESDQFISSRAGSVRSSKSQDVCHIAFGSR
VLGPPPPSGRRNNLRLSAETVRSIGYKNNQSCQQPAEEKHVNSADTSALLIPLSEQQGEKGSSH
PVKQTTPLPASLPTPYPHPPRDPSADKGSSRRGLGLRSSSGSRTEARCGSSSGNSRSEEDVAMA
ANNLTQLTTEPVRASTPEPPAAEPPDEWIFPESSGPPSGAAGSSSSLLLDGDSRTASHLWLETS
KDSDPDQAEGTQMAPKDIFTFSSRPRSAPHGKSHDLSPTGCPCILDPKEDSRVTKGDTELEDDF
YGSDSSEEEYNWRNYQPSQMSESELQMLASLRRQQNEDLEDTGAPHGLSASQVDNCNVSISTSS
DDTTTWNSCLPPPVNQGRHYQKEMNPPSPSNPRDWLNMLSPPIVPPSQQPLEQSLDSSASLSVQ
GGALLLTQPHLASCAVGC

hide sequence

Ensembl Acc Id:

ENSRNOP00000057881 ⟸ ENSRNOT00000061169

Ensembl Acc Id:

ENSRNOP00000070228 ⟸ ENSRNOT00000085530

RefSeq Acc Id:	XP_038949387 ⟸ XM_039093459
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6API2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038949389 ⟸ XM_039093461
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038949382 ⟸ XM_039093454
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000095622 ⟸ ENSRNOT00000105455

Ensembl Acc Id:

ENSRNOP00000084249 ⟸ ENSRNOT00000098727

RefSeq Acc Id:	XP_063130450 ⟸ XM_063274380
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063130452 ⟸ XM_063274382
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6API2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130453 ⟸ XM_063274383
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2JXD4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130451 ⟸ XM_063274381
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6API2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130457 ⟸ XM_063274387
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063130458 ⟸ XM_063274388
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063130456 ⟸ XM_063274386
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063130454 ⟸ XM_063274384
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6API2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063130459 ⟸ XM_063274389
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063130460 ⟸ XM_063274390
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063130455 ⟸ XM_063274385
- Peptide Label:	isoform X8
- UniProtKB:	F1M8H3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000100356 ⟸ ENSRNOT00000125508

Protein Domains

CFA20

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4V7B1-F1-model_v2	AlphaFold	Q4V7B1	1-658	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359720	AgrOrtholog
BioCyc Gene	G2FUF-14311	BioCyc
Ensembl Genes	ENSRNOG00000007206	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000061169	ENTREZGENE
	ENSRNOT00000061169.5	UniProtKB/Swiss-Prot
	ENSRNOT00000085530	ENTREZGENE
	ENSRNOT00000098727	ENTREZGENE
	ENSRNOT00000125508	ENTREZGENE
IMAGE_CLONE	IMAGE:7456960	IMAGE-MGC_LOAD
InterPro	CFA20/C3orf67	UniProtKB/Swiss-Prot
	CFA20_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:361016	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:116196	IMAGE-MGC_LOAD
NCBI Gene	361016	ENTREZGENE
PANTHER	PTHR12458	UniProtKB/Swiss-Prot
Pfam	DUF667	UniProtKB/Swiss-Prot
PhenoGen	Cfap20dc	PhenoGen
RatGTEx	ENSRNOG00000007206	RatGTEx
UniProt	A0A0G2JXD4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZYU1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6API2	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LHL3_RAT	UniProtKB/TrEMBL
	CC067_RAT	UniProtKB/Swiss-Prot
	F1M8H3	ENTREZGENE, UniProtKB/TrEMBL
	Q4V7B1	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Cfap20dc	CFAP20 domain containing	LOC108353018	uncharacterized LOC108353018	Data merged from RGD:11497235	737654	PROVISIONAL
2020-02-24	Cfap20dc	CFAP20 domain containing	LOC361016	similar to RIKEN cDNA 4933406L09	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-08-02	LOC108353018	uncharacterized LOC108353018			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-07-29	LOC361016	similar to RIKEN cDNA 4933406L09			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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