Dusp13b (dual specificity phosphatase 13B) - Rat Genome Database

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Gene: Dusp13b (dual specificity phosphatase 13B) Rattus norvegicus
Analyze
Symbol: Dusp13b
Name: dual specificity phosphatase 13B
RGD ID: 1359712
Description: Predicted to enable MAP kinase phosphatase activity and protein tyrosine/serine/threonine phosphatase activity. Predicted to be involved in negative regulation of MAPK cascade. Predicted to be active in cytoplasm. Orthologous to human DUSP13B (dual specificity phosphatase 13B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2-amino-4,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: dual specificity phosphatase 13; dual specificity protein phosphatase 13; Dusp13; LOC108348179; MGC94474; muscle-restricted dual specificity phosphatase; testis and skeletal muscle-specific dual specificity phosphatase
RGD Orthologs
Human
Mouse
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8152,616,761 - 2,624,434 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl152,609,049 - 2,624,887 (+)EnsemblGRCr8
mRatBN7.2152,567,432 - 2,575,105 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl152,533,547 - 2,575,539 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx152,566,457 - 2,581,840 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0153,952,903 - 3,968,286 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0152,565,257 - 2,580,640 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0152,524,435 - 2,541,734 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl152,526,368 - 2,541,732 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl152,733,114 - 2,735,730 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl152,734,068 - 2,748,466 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl152,526,368 - 2,541,729 (+)Ensemblrn6Rnor6.0
Rnor_5.0152,714,150 - 2,729,517 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4152,614,864 - 2,630,230 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera152,008,057 - 2,023,408 (-)NCBICelera
RGSC_v3.1152,622,556 - 2,630,228 (+)NCBI
Cytogenetic Map15p16NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Molecular cloning and characterization of a novel dual-specificity protein phosphatase possibly involved in spermatogenesis. Nakamura K, etal., Biochem J 1999 Dec 15;344 Pt 3:819-25.
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:11432789   PMID:15252030   PMID:24531476  


Genomics

Comparative Map Data
Dusp13b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8152,616,761 - 2,624,434 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl152,609,049 - 2,624,887 (+)EnsemblGRCr8
mRatBN7.2152,567,432 - 2,575,105 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl152,533,547 - 2,575,539 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx152,566,457 - 2,581,840 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0153,952,903 - 3,968,286 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0152,565,257 - 2,580,640 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0152,524,435 - 2,541,734 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl152,526,368 - 2,541,732 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl152,733,114 - 2,735,730 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl152,734,068 - 2,748,466 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl152,526,368 - 2,541,729 (+)Ensemblrn6Rnor6.0
Rnor_5.0152,714,150 - 2,729,517 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4152,614,864 - 2,630,230 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera152,008,057 - 2,023,408 (-)NCBICelera
RGSC_v3.1152,622,556 - 2,630,228 (+)NCBI
Cytogenetic Map15p16NCBI
DUSP13B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381075,094,434 - 75,109,191 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1075,094,432 - 75,109,206 (-)Ensemblhg38GRCh38
GRCh38.p14 Ensembl1075,094,432 - 75,106,499 (-)Ensemblhg38GRCh38
GRCh371076,854,192 - 76,868,949 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361076,524,196 - 76,538,976 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341076,524,198 - 76,529,254NCBI
Celera1070,142,445 - 70,157,225 (-)NCBICelera
Cytogenetic Map10q22.2NCBI
HuRef1070,852,719 - 70,867,439 (-)NCBIHuRef
CHM1_11077,135,938 - 77,150,718 (-)NCBICHM1_1
T2T-CHM13v2.01075,967,932 - 75,982,690 (-)NCBIT2T-CHM13v2.0
Dusp13b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391421,783,463 - 21,792,947 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1421,783,462 - 21,792,947 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381421,733,395 - 21,748,651 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1421,733,394 - 21,751,181 (-)Ensemblmm10GRCm38
MGSCv371422,552,617 - 22,567,844 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361420,521,947 - 20,537,174 (-)NCBIMGSCv36mm8
Celera1418,116,274 - 18,131,815 (-)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1411.85NCBI
DUSP13B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2887,251,181 - 87,263,568 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11087,256,506 - 87,266,166 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01071,623,286 - 71,638,049 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11074,287,734 - 74,302,527 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1074,287,734 - 74,302,503 (-)EnsemblpanPan2panpan1.1
Dusp13b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721355,739,914 - 55,743,734 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365214,232,565 - 4,245,323 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365214,232,678 - 4,245,199 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DUSP13B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11477,660,124 - 77,677,713 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21483,790,369 - 83,804,190 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DUSP13B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1956,261,811 - 56,276,861 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl956,267,491 - 56,276,844 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604816,755,029 - 16,764,386 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dusp13b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247548,446,329 - 8,457,628 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247548,446,376 - 8,457,678 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Dusp13b
19 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:196
Count of miRNA genes:104
Interacting mature miRNAs:109
Transcripts:ENSRNOT00000017663, ENSRNOT00000067781, ENSRNOT00000074545, ENSRNOT00000074803
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
1300142Bp191Blood pressure QTL 1913.14arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)15115177511Rat

Markers in Region
RH94133  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8152,623,995 - 2,624,149 (+)Marker Load Pipeline
mRatBN7.2152,574,665 - 2,574,820 (+)MAPPERmRatBN7.2
Rnor_6.0152,748,018 - 2,748,172NCBIRnor6.0
Rnor_6.0152,541,295 - 2,541,449NCBIRnor6.0
Rnor_5.0152,729,076 - 2,729,230UniSTSRnor5.0
Rnor_5.0152,523,052 - 2,523,206UniSTSRnor5.0
RGSC_v3.4152,629,791 - 2,629,945UniSTSRGSC3.4
Celera152,008,342 - 2,008,496UniSTS
Cytogenetic Map15p16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
24 12 40 119 99 86 45 84 45 18 295 179 11 68 39 108 41 8 8

Sequence


Ensembl Acc Id: ENSRNOT00000017663   ⟹   ENSRNOP00000017663
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl152,612,922 - 2,624,863 (+)Ensembl
mRatBN7.2 Ensembl152,559,763 - 2,575,539 (+)Ensembl
Rnor_6.0 Ensembl152,734,068 - 2,748,466 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000048713   ⟹   ENSRNOP00000051508
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl152,611,508 - 2,624,429 (+)Ensembl
mRatBN7.2 Ensembl152,559,737 - 2,575,100 (+)Ensembl
Rnor_6.0 Ensembl152,526,368 - 2,541,729 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000067781   ⟹   ENSRNOP00000058941
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl152,616,715 - 2,624,887 (+)Ensembl
mRatBN7.2 Ensembl152,567,432 - 2,575,098 (+)Ensembl
Rnor_6.0 Ensembl152,740,784 - 2,748,450 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000074545   ⟹   ENSRNOP00000064546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl152,733,114 - 2,735,730 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000074803   ⟹   ENSRNOP00000066962
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl152,609,049 - 2,624,863 (+)Ensembl
mRatBN7.2 Ensembl152,533,547 - 2,575,539 (+)Ensembl
Rnor_6.0 Ensembl152,526,368 - 2,541,729 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089013   ⟹   ENSRNOP00000075061
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl152,611,508 - 2,624,429 (+)Ensembl
mRatBN7.2 Ensembl152,563,139 - 2,575,539 (+)Ensembl
Rnor_6.0 Ensembl152,527,343 - 2,541,732 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101834   ⟹   ENSRNOP00000080776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl152,563,139 - 2,575,539 (+)Ensembl
RefSeq Acc Id: NM_001007006   ⟹   NP_001007007
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8152,616,761 - 2,624,434 (+)NCBI
mRatBN7.2152,567,432 - 2,575,105 (+)NCBI
Rnor_6.0152,534,061 - 2,541,734 (+)NCBI
Rnor_5.0152,714,150 - 2,729,517 (+)NCBI
RGSC_v3.4152,614,864 - 2,630,230 (+)RGD
Celera152,008,057 - 2,015,722 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001007007   ⟸   NM_001007006
- UniProtKB: Q5XIN2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000058941   ⟸   ENSRNOT00000067781
Ensembl Acc Id: ENSRNOP00000075061   ⟸   ENSRNOT00000089013
Ensembl Acc Id: ENSRNOP00000051508   ⟸   ENSRNOT00000048713
Ensembl Acc Id: ENSRNOP00000066962   ⟸   ENSRNOT00000074803
Ensembl Acc Id: ENSRNOP00000017663   ⟸   ENSRNOT00000017663
Ensembl Acc Id: ENSRNOP00000064546   ⟸   ENSRNOT00000074545
Ensembl Acc Id: ENSRNOP00000080776   ⟸   ENSRNOT00000101834
Protein Domains
Tyrosine specific protein phosphatases   Tyrosine-protein phosphatase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R587-F1-model_v2 AlphaFold M0R587 1-188 view protein structure
AF-A0A0G2K9N1-F1-model_v2 AlphaFold A0A0G2K9N1 1-304 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359712 AgrOrtholog
BioCyc Gene G2FUF-14599 BioCyc
Ensembl Genes ENSRNOG00000013112 Ensembl
  ENSRNOG00000048428 Ensembl
  ENSRNOG00000057795 Ensembl
  ENSRNOG00000060401 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017663.8 UniProtKB/TrEMBL
  ENSRNOT00000067781.3 UniProtKB/TrEMBL
  ENSRNOT00000074803.4 UniProtKB/TrEMBL
  ENSRNOT00000089013.3 UniProtKB/TrEMBL
Gene3D-CATH 3.90.190.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7135038 IMAGE-MGC_LOAD
  IMAGE:7190084 IMAGE-MGC_LOAD
InterPro Dual-sp/Tyr_phosphatase UniProtKB/TrEMBL
  Dual-sp_phosphatase_cat-dom UniProtKB/TrEMBL
  Dual-sp_phosphatase_famA UniProtKB/TrEMBL
  Dual-sp_phosphatase_subgr_cat UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
KEGG Report rno:361002 UniProtKB/TrEMBL
MGC_CLONE MGC:188125 IMAGE-MGC_LOAD
  MGC:94474 IMAGE-MGC_LOAD
NCBI Gene 361002 ENTREZGENE
PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE UniProtKB/TrEMBL
  DUAL SPECIFICITY PROTEIN PHOSPHATASE 13 ISOFORM B UniProtKB/TrEMBL
  PTHR45682 UniProtKB/TrEMBL
Pfam DSPc UniProtKB/TrEMBL
PhenoGen Dusp13b PhenoGen
PRINTS ADSPHPHTASE UniProtKB/TrEMBL
  ADSPHPHTASEA UniProtKB/TrEMBL
PROSITE TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_DUAL UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013112 RatGTEx
  ENSRNOG00000048428 RatGTEx
  ENSRNOG00000057795 RatGTEx
  ENSRNOG00000060401 RatGTEx
SMART DSPc UniProtKB/TrEMBL
Superfamily-SCOP SSF52799 UniProtKB/TrEMBL
UniProt A0A0G2K9N1_RAT UniProtKB/TrEMBL
  F6Z8N5_RAT UniProtKB/TrEMBL
  F7EXD6_RAT UniProtKB/TrEMBL
  M0RBM2_RAT UniProtKB/TrEMBL
  Q5XIN2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-11 Dusp13b  dual specificity phosphatase 13B  Dusp13  dual specificity phosphatase 13  Name and Symbol changed 629549 APPROVED
2021-03-09 Dusp13  dual specificity phosphatase 13  LOC108348179  dual specificity protein phosphatase 13  Data merged from RGD:11502706 737654 PROVISIONAL
2016-08-02 LOC108348179  dual specificity protein phosphatase 13      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-07-29 Dusp13  dual specificity phosphatase 13      Symbol and Name status set to provisional 70820 PROVISIONAL