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Gene: Tceal8 (transcription elongation factor A like 8) Rattus norvegicus

Analyze

Symbol:

Tceal8

Name:

transcription elongation factor A like 8

RGD ID:

1359631

Description:

Predicted to be located in nucleus. Orthologous to human TCEAL8 (transcription elongation factor A like 8); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2-methoxyethanol; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

TCEA-like protein 8; transcription elongation factor A (SII)-like 8; transcription elongation factor A protein-like 8; transcription elongation factor S-II protein-like 8; up-regulated in nephrectomized rat kidney #1; UR-NR#1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	103,962,930 - 103,965,000 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	103,961,187 - 103,965,394 (-)	Ensembl				GRCr8
mRatBN7.2	X	99,171,307 - 99,173,377 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	99,171,177 - 99,173,710 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	101,300,741 - 101,302,811 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	104,811,355 - 104,813,425 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	102,368,405 - 102,370,475 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	106,713,319 - 106,715,391 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	106,713,320 - 106,715,391 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	106,411,786 - 106,413,858 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	123,481,666 - 123,482,635 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	99,972,106 - 99,974,177 (+)	NCBI		Celera
RGSC_v3.1	X	123,555,099 - 123,556,060 (-)	NCBI
Cytogenetic Map	X	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methoxyethanol (EXP)

2-methylcholine (ISO)

2-palmitoylglycerol (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

amitrole (EXP)

amphetamine (EXP)

benzo[a]pyrene (ISO)

Benzo[k]fluoranthene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

cadmium atom (EXP)

cadmium dichloride (EXP)

carbon nanotube (ISO)

CGP 52608 (ISO)

choline (ISO)

cisplatin (EXP,ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dioxygen (ISO)

disodium selenite (ISO)

doxorubicin (ISO)

ethanol (ISO)

fenthion (ISO)

flutamide (EXP)

folic acid (ISO)

glafenine (EXP)

Heptachlor epoxide (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

inulin (ISO)

L-methionine (ISO)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methidathion (ISO)

methimazole (EXP)

Monobutylphthalate (ISO)

N-nitrosodiethylamine (ISO)

okadaic acid (ISO)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

propanal (ISO)

propiconazole (EXP)

quercetin (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

tamoxifen (ISO)

temozolomide (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

tolcapone (EXP)

trichloroethene (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

Cellular Component

nucleus (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Gene expression variance based on random sequencing in rat remnant kidney.	Horiba N, etal., Kidney Int 2004 Jul;66(1):29-45.
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334

Genomics

Comparative Map Data

Tceal8
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	103,962,930 - 103,965,000 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	103,961,187 - 103,965,394 (-)	Ensembl				GRCr8
mRatBN7.2	X	99,171,307 - 99,173,377 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	99,171,177 - 99,173,710 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	101,300,741 - 101,302,811 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	104,811,355 - 104,813,425 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	102,368,405 - 102,370,475 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	106,713,319 - 106,715,391 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	106,713,320 - 106,715,391 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	106,411,786 - 106,413,858 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	123,481,666 - 123,482,635 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	99,972,106 - 99,974,177 (+)	NCBI		Celera
RGSC_v3.1	X	123,555,099 - 123,556,060 (-)	NCBI
Cytogenetic Map	X	q32	NCBI

TCEAL8
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	103,252,995 - 103,255,155 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	103,252,863 - 103,255,204 (-)	Ensembl			hg38	GRCh38
GRCh37	X	102,507,923 - 102,510,083 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	102,394,579 - 102,396,777 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	X	102,314,068 - 102,316,266	NCBI
Celera	X	102,946,932 - 102,949,130 (-)	NCBI		Celera
Cytogenetic Map	X	q22.1	NCBI
HuRef	X	92,171,640 - 92,193,113 (-)	NCBI		HuRef
CHM1_1	X	102,400,921 - 102,403,119 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	101,699,973 - 101,702,133 (-)	NCBI		T2T-CHM13v2.0

Tceal8
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	135,069,733 - 135,073,000 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	135,069,733 - 135,073,091 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	136,168,984 - 136,172,251 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	136,168,984 - 136,172,342 (-)	Ensembl			mm10	GRCm38
MGSCv37	X	132,703,523 - 132,706,790 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	131,516,445 - 131,518,569 (-)	NCBI		MGSCv36	mm8
Celera	X	119,485,040 - 119,488,655 (-)	NCBI		Celera
Cytogenetic Map	X	F1	NCBI
cM Map	X	57.4	NCBI

Tceal8
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955548	391,202 - 393,533 (-)	Ensembl
ChiLan1.0	NW_004955548	391,202 - 393,533 (-)	NCBI	ChiLan1.0	ChiLan1.0

TCEAL8
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	102,865,215 - 102,867,424 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	102,868,820 - 102,871,029 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	92,482,577 - 92,484,803 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	102,861,350 - 102,863,553 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

TCEAL8
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	76,431,349 - 76,433,574 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	62,852,555 - 62,854,546 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	78,242,480 - 78,244,472 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	78,242,242 - 78,244,418 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	75,719,740 - 75,721,731 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	77,411,803 - 77,413,794 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	77,173,323 - 77,175,314 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tceal8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	61,652,677 - 61,654,899 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936547	7,973,152 - 7,975,311 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936547	7,974,317 - 7,975,311 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TCEAL8
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	84,175,200 - 84,177,427 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	84,175,196 - 84,177,431 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	97,963,379 - 97,965,605 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TCEAL8
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	91,161,891 - 91,164,089 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	91,162,333 - 91,164,034 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666065	16,019,322 - 16,021,545 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tceal8
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624954	624,063 - 626,248 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624954	624,043 - 626,248 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tceal8
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	88,163,795 - 88,165,957 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tceal8
6 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	150
Count of miRNA genes:	116
Interacting mature miRNAs:	135
Transcripts:	ENSRNOT00000017138
Prediction methods:	Miranda, Pita, Pita,Targetscan, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598872	Memor14	Memory QTL 14	4.5		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	97528096	142528096	Rat
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	80434318	125434318	Rat
738029	Stresp2	Stress response QTL 2	3.4	0.0004	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	92979612	117740458	Rat
738035	Stresp1	Stress response QTL 1	4.96	0.000011	stress-related behavior trait (VT:0010451)	defensive burying - coping	X	45182909	117740458	Rat
2302047	Pia34	Pristane induced arthritis QTL 34	5.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	19	96916163	141916163	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB108667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC086418	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ209475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214154	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214671	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000017138 ⟹ ENSRNOP00000053943

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	99,171,308 - 99,173,710 (-)	Ensembl
Rnor_6.0 Ensembl	X	106,713,320 - 106,715,391 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097834 ⟹ ENSRNOP00000080501

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	99,171,308 - 99,172,840 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102117 ⟹ ENSRNOP00000096711

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	99,171,234 - 99,173,303 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118719 ⟹ ENSRNOP00000086262

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	103,961,187 - 103,965,394 (-)	Ensembl
mRatBN7.2 Ensembl	X	99,171,177 - 99,173,494 (-)	Ensembl

RefSeq Acc Id:

NM_001014275 ⟹ NP_001014297

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	103,962,930 - 103,965,000 (-)	NCBI
mRatBN7.2	X	99,171,307 - 99,173,377 (-)	NCBI
Rnor_6.0	X	106,713,319 - 106,715,391 (-)	NCBI
Rnor_5.0	X	106,411,786 - 106,413,858 (+)	NCBI
RGSC_v3.4	X	123,481,666 - 123,482,635 (-)	RGD
Celera	X	99,972,106 - 99,974,177 (+)	RGD

Sequence:

show sequence

GAAGAGTGGCCCTGCTACTTCCAGGACTCTTGATTATTGGGCGCGACATAATTGAGGTGCAAGA
AGAGAGGAAAATCTCCAGATACCTACAGGATTACTTCATTAAGAAAAAATAACCAACATGCAAA
AGTCTTGTGACGAAAACGAAGGAACACCCCAGAACACTCCAAAAGCAGATGAAGGCCATCCTTC
AGAAGATCCACCACAGCAGGCAGGAGAAAATCTTCAGGCTTCTGGAGAAAATGTGAGAGAGGAA
ACTGATGGAAGCCTTCGAGGAGAGCCTGCTGAACCCAGCCCAGAGCCTAAAGAGGACACTCCTG
CAAGGCATCTGAACCCTGAAGAAGTGATAAGAGGAGTAGATGAGTTGGAAAGGCTTAGGGAAGA
GATAAGAAGAGTAAGAAATAAGTTTGTGTTGATGCATTGGAAGCAAAGACATTCCCGAAGCCGT
CCTTACCCTGTGTGCTTCAGGCCTTGAAATCGTTTTTTTCTCTATTGAAATGTGGCTGCTGCTT
TCTTTCTCTTAGCATTTTTCTGATGTATCTTTGAACTTCATTTTACTTTTAATAATAATTACCT
GGCGGTATTTTCTTTTAGGTAGTTTCGTTGTTACCAGCATCTCATTGGATTTTGGATTTTTGAC
CCATTTTCCACGTTTATCTTTCAGTTGGAAAGTTTCACACTTATGCATGGAAATATACAATTAA
ACAGCAGATTGAAAAGCAGCATATTTAGGATCAGCTCACATATATAGGAAAATTCCTAATTATG
TGTGTACATGTATAATTATACGTATCAAAAAACTTAACTGCTTATTTTTGGTGTGGTGTGTTTT
AATTTTGCCTTTTGCTTATGTTGATTTTTTTAATGAATACATGTCTCAAAGAACTGCAGATTTT
TTTAATAAGTGGGAGTTAATTAAAATTAATTTGTAACCAGCTTGTAGAGGCAATAAAGGCACTA
AACTCCTGATGAACTATTAAAAAGAAATGTAAACCTGGAATTACCTCTGGATTTCTTAGCCAGA
GGAATAAAACTGGCAATCATTATAGACAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001014297	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH86418	(Get FASTA)	NCBI Sequence Viewer
	BAD23892	(Get FASTA)	NCBI Sequence Viewer
	EDL85810	(Get FASTA)	NCBI Sequence Viewer
	EDL85811	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000053943.2
	ENSRNOP00000080501.1
	ENSRNOP00000086262
	ENSRNOP00000086262.1
	ENSRNOP00000096711.1
GenBank Protein	Q6I7R5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001014297 ⟸ NM_001014275
- UniProtKB:	Q6I7R5 (UniProtKB/Swiss-Prot), A6KT25 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQKSCDENEGTPQNTPKADEGHPSEDPPQQAGENLQASGENVREETDGSLRGEPAEPSPEPKED TPARHLNPEEVIRGVDELERLREEIRRVRNKFVLMHWKQRHSRSRPYPVCFRP hide sequence

Ensembl Acc Id:

ENSRNOP00000053943 ⟸ ENSRNOT00000017138

Ensembl Acc Id:

ENSRNOP00000086262 ⟸ ENSRNOT00000118719

Ensembl Acc Id:

ENSRNOP00000080501 ⟸ ENSRNOT00000097834

Ensembl Acc Id:

ENSRNOP00000096711 ⟸ ENSRNOT00000102117

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6I7R5-F1-model_v2	AlphaFold	Q6I7R5	1-117	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701940

Promoter ID:

EPDNEW_R12464

Type:

initiation region

Name:

Tceal8_1

Description:

transcription elongation factor A like 8

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	106,715,414 - 106,715,474	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359631	AgrOrtholog
Ensembl Genes	ENSRNOG00000028585	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000017138.7	UniProtKB/Swiss-Prot
	ENSRNOT00000097834.1	UniProtKB/Swiss-Prot
	ENSRNOT00000102117.1	UniProtKB/Swiss-Prot
	ENSRNOT00000118719	ENTREZGENE
	ENSRNOT00000118719.1	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7128221	IMAGE-MGC_LOAD
InterPro	TF_A-like/BEX	UniProtKB/Swiss-Prot
KEGG Report	rno:367909	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105644	IMAGE-MGC_LOAD
NCBI Gene	367909	ENTREZGENE
Pfam	BEX	UniProtKB/Swiss-Prot
PhenoGen	Tceal8	PhenoGen
RatGTEx	ENSRNOG00000028585	RatGTEx
UniProt	A6KT24_RAT	UniProtKB/TrEMBL
	A6KT25	ENTREZGENE, UniProtKB/TrEMBL
	Q6I7R5	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-19	Tceal8	transcription elongation factor A like 8	Tceal8	transcription elongation factor A (SII)-like 8	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Tceal8	transcription elongation factor A (SII)-like 8			Symbol and Name status set to approved	1299863	APPROVED
2005-07-29	Tceal8	transcription elongation factor A (SII)-like 8			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expression is altered in 5/6 nephrectomized kidney	1359786

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar