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Gene: Cep83 (centrosomal protein 83) Rattus norvegicus

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Symbol:

Cep83

Name:

centrosomal protein 83

RGD ID:

1359593

Description:

Predicted to enable identical protein binding activity. Predicted to be involved in cilium assembly; establishment of centrosome localization; and vesicle docking. Predicted to act upstream of or within protein localization to centrosome. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of ciliary transition fiber. Predicted to be active in Golgi apparatus; centriole; and centrosome. Human ortholog(s) of this gene implicated in nephronophthisis 18. Orthologous to human CEP83 (centrosomal protein 83); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Ccdc41; centrosomal protein of 83 kDa; coiled-coil domain containing 41; coiled-coil domain-containing protein 41; LOC366872; RGD1359593; similar to RIKEN cDNA 4921537D05

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CEP83 (centrosomal protein 83)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cep83 (centrosomal protein 83)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cep83 (centrosomal protein 83)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CEP83 (centrosomal protein 83)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CEP83 (centrosomal protein 83)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cep83 (centrosomal protein 83)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CEP83 (centrosomal protein 83)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CEP83 (centrosomal protein 83)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cep83 (centrosomal protein 83)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cep83 (centrosomal protein 83)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	UCP3 (uncoupling protein 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CEP83 (centrosomal protein 83)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cep83 (centrosomal protein 83)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cep83 (centrosomal protein 83)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cep83	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	cep83	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	31,167,198 - 31,276,513 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	31,167,216 - 31,276,716 (+)	Ensembl				GRCr8
mRatBN7.2	7	29,280,358 - 29,389,574 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	29,280,419 - 29,389,574 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	31,270,092 - 31,379,190 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	33,438,268 - 33,547,419 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	33,208,784 - 33,317,925 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	35,739,553 - 35,847,618 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	35,773,928 - 35,847,617 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	35,803,488 - 35,911,636 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	31,911,351 - 31,984,394 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	26,360,215 - 26,468,974 (+)	NCBI		Celera
RGSC_v3.1	7	31,931,621 - 32,004,664 (+)	NCBI
Cytogenetic Map	7	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

ciliopathy (ISO)

genetic disease (ISO)

megacolon (ISO)

nephronophthisis (ISO)

nephronophthisis 18 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-palmitoylglycerol (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

copper atom (EXP)

copper(0) (EXP)

copper(II) sulfate (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

ferric oxide (ISO)

flavone (ISO)

folic acid (ISO)

glycidol (EXP)

indole-3-methanol (EXP)

linsidomine (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

morphine (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

quercetin (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

trovafloxacin (ISO)

valdecoxib (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell projection organization (IEA)

cilium assembly (IBA,ISO,ISS)

establishment of centrosome localization (IBA,ISO)

protein localization to centrosome (ISO)

vesicle docking (ISO)

Cellular Component

centriole (IBA,IEA,ISO,ISS)

centrosome (IBA)

ciliary transition fiber (IBA,ISO)

Golgi apparatus (IBA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:8889548	PMID:12947022	PMID:15489334	PMID:23348840	PMID:23530209	PMID:24469809

Genomics

Comparative Map Data

Cep83
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	31,167,198 - 31,276,513 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	31,167,216 - 31,276,716 (+)	Ensembl				GRCr8
mRatBN7.2	7	29,280,358 - 29,389,574 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	29,280,419 - 29,389,574 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	31,270,092 - 31,379,190 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	33,438,268 - 33,547,419 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	33,208,784 - 33,317,925 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	35,739,553 - 35,847,618 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	35,773,928 - 35,847,617 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	35,803,488 - 35,911,636 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	31,911,351 - 31,984,394 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	26,360,215 - 26,468,974 (+)	NCBI		Celera
RGSC_v3.1	7	31,931,621 - 32,004,664 (+)	NCBI
Cytogenetic Map	7	q13	NCBI

CEP83
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	94,265,662 - 94,460,454 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	94,306,449 - 94,459,988 (-)	Ensembl			hg38	GRCh38
GRCh37	12	94,700,169 - 94,854,230 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	93,226,187 - 93,377,895 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	12	94,373,316 - 94,525,023 (-)	NCBI		Celera
Cytogenetic Map	12	q22	NCBI
HuRef	12	91,769,217 - 91,920,928 (-)	NCBI		HuRef
CHM1_1	12	94,667,059 - 94,818,773 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	94,249,742 - 94,441,264 (-)	NCBI		T2T-CHM13v2.0

Cep83
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	94,524,476 - 94,626,201 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	94,524,516 - 94,626,715 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	94,688,624 - 94,790,336 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	94,688,654 - 94,790,853 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	94,151,535 - 94,253,081 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	94,118,453 - 94,219,844 (+)	NCBI		MGSCv36	mm8
Celera	10	96,661,649 - 96,763,007 (+)	NCBI		Celera
Cytogenetic Map	10	C2	NCBI
cM Map	10	49.05	NCBI

Cep83
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	31,024,522 - 31,165,824 (-)	Ensembl
ChiLan1.0	NW_004955405	31,024,524 - 31,165,824 (-)	NCBI	ChiLan1.0	ChiLan1.0

CEP83
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	102,351,758 - 102,505,794 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	102,348,012 - 102,502,188 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	91,829,333 - 92,008,890 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	95,238,166 - 95,403,175 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	95,247,299 - 95,403,175 (-)	Ensembl			panPan2	panpan1.1

CEP83
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	34,409,176 - 34,541,746 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	34,418,139 - 34,499,159 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	34,868,023 - 34,874,353 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
Dog10K_Boxer_Tasha	15	34,875,988 - 34,927,703 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	35,072,544 - 35,204,936 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	35,080,927 - 35,302,000 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	34,346,160 - 34,478,473 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	34,435,644 - 34,568,151 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	34,704,475 - 34,836,795 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cep83
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	25,442,808 - 25,563,887 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936507	10,671,047 - 10,792,854 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936507	10,671,371 - 10,792,863 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CEP83
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	88,770,532 - 88,899,056 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	88,770,706 - 88,909,874 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	93,460,477 - 93,529,450 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CEP83
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	89,692,069 - 89,858,565 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	89,703,972 - 89,827,267 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	155,310,846 - 155,469,351 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cep83
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624750	12,533,762 - 12,638,059 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624750	12,533,644 - 12,638,701 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cep83
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	173,857,811 - 173,968,529 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cep83
916 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	263
Count of miRNA genes:	177
Interacting mature miRNAs:	198
Transcripts:	ENSRNOT00000034639
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354644	Spl4	Serum phospholipid level QTL 4	4.9		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	7	21541977	51639954	Rat
7411569	Bw137	Body weight QTL 137		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	23807606	68807606	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	10517086	62346019	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	7216097	52216097	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1709527	46709527	Rat
1549840	Bss5	Bone structure and strength QTL 5	9.8		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	7	26638057	71638057	Rat
1300127	Srn1	Serum renin concentration QTL 1	3.87		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	7	24179478	86817926	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	10112916	60150541	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	9460877	54460877	Rat
1354637	Scl30	Serum cholesterol level QTL 30	3.7		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	7	21541977	51639954	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34650782	Rat
1354639	Spl5	Serum phospholipid level QTL 5	3.9		blood LDL phospholipid amount (VT:0010505)	blood low density lipoprotein phospholipid level (CMO:0001568)	7	21541977	35707405	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	32612984	Rat
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1669658	46669658	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	10112916	99900612	Rat
2290372	Gluco33	Glucose level QTL 33	2.71		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	1	31777942	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
1582260	Bw72	Body weight QTL 72	3.2	0.0043	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	32612984	Rat
1582261	Bw69	Body weight QTL 69	3.2	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582262	Bw75	Body weight QTL 75	3	0.0038	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
70190	Mcs6	Mammary carcinoma susceptibility QTL 6	2.29		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	28624575	65788017	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	21541977	86817926	Rat
1300138	Hrtrt9	Heart rate QTL 9	4.72		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	10498820	55498820	Rat
61369	Mcs2	Mammary carcinoma susceptibility QTL 2	3.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	20920494	37412865	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	17460447	62460447	Rat
70207	Niddm31	Non-insulin dependent diabetes mellitus QTL 31	3.9		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	7	20057232	65057232	Rat
61439	Cia8	Collagen induced arthritis QTL 8	5.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	7	27182914	72182914	Rat

Markers in Region

RH127423

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	29,389,167 - 29,389,361 (+)	MAPPER	mRatBN7.2
mRatBN7.2	X	133,430,726 - 133,430,920 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	35,847,212 - 35,847,405	NCBI	Rnor6.0
Rnor_5.0	7	35,911,230 - 35,911,423	UniSTS	Rnor5.0
RGSC_v3.4	7	31,983,988 - 31,984,181	UniSTS	RGSC3.4
Celera	7	26,468,568 - 26,468,761	UniSTS
Celera	X	68,884,230 - 68,884,423	UniSTS
RH 3.4 Map	7	207.1	UniSTS
Cytogenetic Map	7	q13	UniSTS

AW533436

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	29,384,452 - 29,384,671 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	35,842,497 - 35,842,715	NCBI	Rnor6.0
Rnor_5.0	7	35,906,515 - 35,906,733	UniSTS	Rnor5.0
RGSC_v3.4	7	31,979,273 - 31,979,491	UniSTS	RGSC3.4
Celera	7	26,463,853 - 26,464,071	UniSTS
RH 3.4 Map	7	232.5	UniSTS
Cytogenetic Map	7	q13	UniSTS

RH139960

Rat Assembly	Chr	Position (strand)	Source
Celera	X	68,884,706 - 68,884,902	UniSTS
RH 3.4 Map	X	945.8	UniSTS
Cytogenetic Map	7	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264038	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AA818223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AI454855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AW143552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CF109495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK476474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO389123	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM090143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000034639 ⟹ ENSRNOP00000031786

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	31,167,216 - 31,276,716 (+)	Ensembl
mRatBN7.2 Ensembl	7	29,280,419 - 29,389,574 (+)	Ensembl
Rnor_6.0 Ensembl	7	35,773,928 - 35,847,617 (+)	Ensembl

RefSeq Acc Id:

NM_001014266 ⟹ NP_001014288

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	31,167,367 - 31,276,513 (+)	NCBI
mRatBN7.2	7	29,280,419 - 29,389,574 (+)	NCBI
Rnor_6.0	7	35,739,641 - 35,847,618 (+)	NCBI
Rnor_5.0	7	35,803,488 - 35,911,636 (+)	NCBI
RGSC_v3.4	7	31,911,351 - 31,984,394 (+)	RGD
Celera	7	26,360,215 - 26,468,974 (+)	NCBI

Sequence:

show sequence

CTCAACCTTCCCTAGGAGTGGGTGCCCTCGGGTACAGCCCGGCTCGTTGGCTTGTCTCCACCCC
CGCGGCGGGAGCGGCCGCCTGGACCGCTCCAGACGTGGCGGGCTGGGCCGACACCCCAGCCGGT
GGGACCGTCTGGACCCCTCGGCCCCAATGCCTGAGCGAGCAGAGCGGTGTGGGTGGCGGTGGTC
GGAGCTGTGCCGGGGACCCAGGGGGGCGAGCGCGGCTGCTGTGCTAGGGCACGCTGCTAGGACC
GTGTGTAAGTTTGGCATGATTTGGTCCCCTGGGATTCTGCCTTAGCAGGAAAGAAGTTGGAAAT
ACTTCCTGGAAGGAACTAACACAATACAAACGCCACAGCTTAGTCCTTACATGTCAGCCACCTT
ACAAATATGGACACATTTCCTAGCATATTTCCACCCGGAGGAGACAGTAGGCTGAATCCTGAAC
CTGAGTTCCAAAGTATGTTAATAGATGAAAGGGTACGATGTGAACATCATAAACATAATTATCA
GGCTCTGAAAATTGAACACAAAAGGTTGCAGGAAGAATATGTAAAATCACAAAATGAACTTAAG
CGTGTGTTAAATGAAAAACAAACAAACCAGGAAAAATTCCAACTGCTCCTTGAAGAATTAAGGG
GGGAATTAGTAGAGAAAGTTAAGGACATGGAAGCAATGAAACTGCAGATATTAACACCACAAAA
ATTGGAATTGGTAAAAGCCCAACTACAACAAGAATTAGAAGCTCCAATGCGAGAACGTTTTCGG
ACTCTTGATGAAGAAGTGGAAAGGTACAGAGCTGAATACAACAAGCTCCGCTACGAGCACACAT
TCCTCAAGTCAGAGTTTGAACACCAGAAGGAAGAGCTTACTCGTATTTCAGAAGAAGAAAAAAT
GAAATACAAGTCAGAGGTTGCACGACTGGAGAAGGATAAAGAGGAACTACATAACCAGCTGCTT
AGTGTTGATCCCACAAGAGATAGCAAACGAGTGGAGCAACTTGTTCGAGAAAAAACCCATTTGC
TTCAGAAATTGAAAAGTTTAGAGGCTGAAGTAGCAGAATTAAGGGCTGAGAAAGAGAATTCTGG
TGCTCAGGTAGAAAATGTCCAAAGAATACAAGTGAGGCAGTTGGCTGAGATGCAGGCCACTCTC
AGATCCTTGGAGGCTGAAAAGCAGTCAGCTAAACTACAGGCTGAACGCCTAGAAAAAGAGCTAC
AATCAAGCAACGAACAAAACACCTGTTTAATTAGTAAATTGCATAAGGCTGACCGAGAAATAAG
CACGCTGACTAGTCAGGTGAAAGAGCTTAAACATGCAAACAAGCTCGAAATAACTGACGTCAAA
CTGGAGGCTGCAAGAGCGAAGAGTGAGCTAGAGCGAGAGAGGAATAAGATCCAAAGTGAACTCG
ATGGACTGCAGTCAGACAATGAAATTCTCAAGTCGACTGTTGAACACCACAAAGTGCTCTTGGT
GGAAAAAGATCGTGAATTAATACGTAAAGTACAAGCTGCCAAGGAAGAAGGTTACCAGAAACTT
GTGGTCTTGCAAGATGAAAAGCTAGAACTTGAGAACAGATTATCAGACTTAGAGAAAATGAAAG
TGGAGCATGATGTCTGGAGGCAGTCGGAAAAGGATCAGTGTGAAGAGAAGCTGCGGGCCTCCCA
GGCGGCAGAGGAGGCAGCCCGGAGGGAACTGCAGAGCATTAGGTTAAAACTTCAACAACAAATT
GTGAATACCGAAAAAGCAGAGAAAGAAAAACTTGAAAATTCTGAACTGAAACAGCAAATCAGTC
ATTTACAGATCCAAGTGACCTCACTGACGCAGTCAGAGAATGACTTGCTGAATTCAAACCAAAT
GCTGAAGGACATGGTGGAGAGGTTAAAGCAAGAGTGCCGACATTTAAGAAGCCAAGCTGAAAAA
GTGCAACTAGAAGTTGAAAAGACACTGGAGGAAAAGCAGATACAGTGGTTGGAAGAAAAGCATA
AGCTTCATGAGCGTATCACAGACAGAGAGGAAAAGTACAATCAAGCAAAAGAGAAACTGCAGCG
GGCAGCAACTGCTCAGAAAAAGAGAAAATCTCTTCATGAGAATAAATTGAAGAGACTGCAGGAG
AAAGTGGAAGTCTTGGAGGCAAAGAAAGAAGAATTAGAGACAGAAAACCAGGTGTTAAATAGAC
AAAATGTTCCATTTGAAGAATATACAAGGCTTCAGAAACGACTAAAGGACATACAGAGAAGACA
TAATGAATTTCGAAGTCTAATCTTGGTTCCTAACATGCCTCCCGCAGCATCGGTCAATCCTGCT
AACTTCCAGTCCTCAGCTATAGTTCCTGGAGTGGAACTCTCCTTTCCCCCTCATCTGCAGGAAG
AACAGCATCAAAGAGAACTCTCTCTCCTTCGCAAAAGACTGGAAGAGCTAGAAACTACACAAAG
AAAACAACTAGAGGAACTTGGATCTCCCGGGGAGTGATGCTGGAAGAAAGGCAAAGCCAGAAAC
TCAATAAAGTATGACGTTTAACGTGTGGCCTCCAGGTGCTTTCTTACTGTTTGCCAAAATTGAG
CTGCCTCAAGACAAGGTACTAGCTATGCGCTGCACTGCAAGGGCTCCAAGATTTTAGGATAATA
CTAAGAAAAATGAAGTATTCATATATTTAGGACATGCATTGATAATCTTTTGACAATGCAAAAA
TAAAAGGAACTAGTTAATTAAAAATCAAGTTTTCAAATTTATTAATTTTTATTTTGTTGATATT
TTCTGACATTTTGCTTGAAATATATCCATCCTGAAGTCCCTTTTCCTTATCTTTGAAATGTCTC
CTTGGTAATAACAAGATCAGTAAATATCTCCTTTCCTATATATAAAAGTTTTGGAAAAGATGGT
CATTTAAAAGTATAAAAAACACTTAAAAGTTTCTAAACATGTATATTATAGAAATCCTTTCCTA
AAAGCTGTGCATTTAATTTATTGAATAACTTAATAAATATTTTTGTATCTATGCTA

hide sequence

RefSeq Acc Id:

XM_008765317 ⟹ XP_008763539

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	31,167,496 - 31,276,508 (+)	NCBI
mRatBN7.2	7	29,280,361 - 29,389,570 (+)	NCBI
Rnor_6.0	7	35,739,553 - 35,847,613 (+)	NCBI

Sequence:

show sequence

CGGCGTGTCTGCTGAGGAGGCCGGGCCGCAGAGGAGGAGCCGGGCTTGCAGCCGCCGCCCTCTC
GGCCCTCCGAGTTTCCCGGGCTACCTCAACCTTCCCTAGGAGTGGGTGCCCTCGGGTACAGCCC
GGCTCGTTGGCTTGTCTCCACCCCCGCGGCGGGAGCGGCCGCCTGGACCGCTCCAGACGTGGCG
GGCTGGGCCGACACCCCAGCCGGTGGGACCGTCTGGACCCCTCGGCCCCAATGCCTGAGCGAGC
AGAGCGGTGTGGGTGGCGGTGGTCGGAGCTGTGCCGGGGACCCAGGGGGGCGAGCGCGGCTGCT
GTGCTAGGGCACGCTGCTAGGACCGTGTGTAAGTTTGGCATGATTTGGTCCCCTGGGATTCTGC
CTTAGCAGGAAAGAAGTTGGAAATACTTCCTGGAAGGAACTAACACAATACAAACGCCACAGCT
TAGTCCTTACATGTCAGCCACCTTACAAATATGGACACATTTCCTAGCATATTTCCACCCGGAG
GAGACAGTAGGCTGAATCCTGAACCTGAGTTCCAAAGTATGTTAATAGATGAAAGGGTACGATG
TGAACATCATAAACATAATTATCAGGCTCTGAAAATTGAACACAAAAGGTTGCAGGAAGAATAT
GTAAAATCACAAAATGAACTTAAGCGTGTGTTAAATGAAAAACAAACAAACCAGGAAAAATTCC
AACTGCTCCTTGAAGAATTAAGGGGGGAATTAGTAGAGAAAGTTAAGGACATGGAAGCAATGAA
ACTGCAGATATTAACACCACAAAAATTGGAATTGGTAAAAGCCCAACTACAACAAGAATTAGAA
GCTCCAATGCGAGAACGTTTTCGGACTCTTGATGAAGAAGTGGAAAGGTACAGAGCTGAATACA
ACAAGCTCCGCTACGAGCACACATTCCTCAAGTCAGAGTTTGAACACCAGAAGGAAGAGCTTAC
TCGTATTTCAGAAGAAGAAAAAATGAAATACAAGTCAGAGGTTGCACGACTGGAGAAGGATAAA
GAGGAACTACATAACCAGCTGCTTAGTGTTGATCCCACAAGAGATAGCAAACGAGTGGAGCAAC
TTGTTCGAGAAAAAACCCATTTGCTTCAGAAATTGAAAAGTTTAGAGGCTGAAGTAGCAGAATT
AAGGGCTGAGAAAGAGAATTCTGGTGCTCAGGTAGAAAATGTCCAAAGAATACAAGTGAGGCAG
TTGGCTGAGATGCAGGCCACTCTCAGATCCTTGGAGGCTGAAAAGCAGTCAGCTAAACTACAGG
CTGAACGCCTAGAAAAAGAGCTACAATCAAGCAACGAACAAAACACCTGTTTAATTAGTAAATT
GCATAAGGCTGACCGAGAAATAAGCACGCTGACTAGTCAGGTGAAAGAGCTTAAACATGCAAAC
AAGCTCGAAATAACTGACGTCAAACTGGAGGCTGCAAGAGCGAAGAGTGAGCTAGAGCGAGAGA
GGAATAAGATCCAAAGTGAACTCGATGGACTGCAGTCAGACAATGAAATTCTCAAGTCGACTGT
TGAACACCACAAAGTGCTCTTGGTGGAAAAAGATCGTGAATTAATACGTAAAGTACAAGCTGCC
AAGGAAGAAGGTTACCAGAAACTTGTGGTCTTGCAAGATGAAAAGCTAGAACTTGAGAACAGAT
TATCAGACTTAGAGAAAATGAAAGTGGAGCATGATGTCTGGAGGCAGTCGGAAAAGGATCAGTG
TGAAGAGAAGCTGCGGGCCTCCCAGGCGGCAGAGGAGGCAGCCCGGAGGGAACTGCAGAGCATT
AGGTTAAAACTTCAACAACAAATTGTGAATACCGAAAAAGCAGAGAAAGAAAAACTTGAAAATT
CTGAACTGAAACAGCAAATCAGTCATTTACAGATCCAAGTGACCTCACTGACGCAGTCAGAGAA
TGACTTGCTGAATTCAAACCAAATGCTGAAGGACATGGTGGAGAGGTTAAAGCAAGAGTGCCGA
CATTTAAGAAGCCAAGCTGAAAAAGTGCAACTAGAAGTTGAAAAGACACTGGAGGAAAAGCAGA
TACAGTGGTTGGAAGAAAAGCATAAGCTTCATGAGCGTATCACAGACAGAGAGGAAAAGTACAA
TCAAGCAAAAGAGAAACTGCAGCGGGCAGCAACTGCTCAGAAAAAGAGAAAATCTCTTCATGAG
AATAAATTGAAGAGACTGCAGGAGAAAGTGGAAGTCTTGGAGGCAAAGAAAGAAGAATTAGAGA
CAGAAAACCAGGTGTTAAATAGACAAAATGTTCCATTTGAAGAATATACAAGGCTTCAGAAACG
ACTAAAGGACATACAGAGAAGACATAATGAATTTCGAAGTCTAATCTTGGTTCCTAACATGCCT
CCCGCAGCATCGGTCAATCCTGCTAACTTCCAGTCCTCAGCTATAGTTCCTGGAGTGGAACTCT
CCTTTCCCCCTCATCTGCAGAACAGCATCAAAGAGAACTCTCTCTCCTTCGCAAAAGACTGGAA
GAGCTAGAAACTACACAAAGAAAACAACTAGAGGAACTTGGATCTCCCGGGGAGTGATGCTGGA
AGAAAGGCAAAGCCAGAAACTCAATAAAGTATGACGTTTAACGTGTGGCCTCCAGGTGCTTTCT
TACTGTTTGCCAAAATTGAGCTGCCTCAAGACAAGGTACTAGCTATGCGCTGCACTGCAAGGGC
TCCAAGATTTTAGGATAATACTAAGAAAAATGAAGTATTCATATATTTAGGACATGCATTGATA
ATCTTTTGACAATGCAAAAATAAAAGGAACTAGTTAATTAAAAATCAAGTTTTCAAATTTATTA
ATTTTTATTTTGTTGATATTTTCTGACATTTTGCTTGAAATATATCCATCCTGAAGTCCCTTTT
CCTTATCTTTGAAATGTCTCCTTGGTAATAACAAGATCAGTAAATATCTCCTTTCCTATATATA
AAAGTTTTGGAAAAGATGGTCATTTAAAAGTATAAAAAACACTTAAAAGTTTCTAAACATGTAT
ATTATAGAAATCCTTTCCTAAAAGCTGTGCATTTAATTTATTGAATAACTTAATAAATATTTTT
GTATCTA

hide sequence

RefSeq Acc Id:

XM_017595016 ⟹ XP_017450505

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	31,167,721 - 31,276,508 (+)	NCBI
mRatBN7.2	7	29,280,988 - 29,389,574 (+)	NCBI
Rnor_6.0	7	35,739,924 - 35,847,618 (+)	NCBI

Sequence:

show sequence

TTTCTAGGCATGCTGGGCGTCTGCTTGGAATCCTGCAGCACTCCTCCGCGTCCGCCCTTGAACC
CCGGTTTTGTTTCCTGGTGAAGAAGTGGAAGCGCGTGTTAGGAAGGCAGGCCCGGGTATTTTTT
TAAAGCACGTGAAACTCCTTTCCCGGCTTTTTGGTGCACTGCGGCATGATAGCTAGCAGAGTAA
TGGGGTTAATGTAAAACACCTCCAGTTTAATTTGTGACGGAAAAACTACGCTGTCGTCATTTTT
CCTTGCCCTTAAAGATAGTTGTAGCAGTTTGTTTGCGGATGTTGCCGAGGCATGATTTGGTCCC
CTGGGATTCTGCCTTAGCAGGAAAGAAGTTGGAAATACTTCCTGGAAGGAACTAACACAATACA
AACGCCACAGCTTAGTCCTTACATGTCAGCCACCTTACAAATATGGACACATTTCCTAGCATAT
TTCCACCCGGAGGAGACAGTAGGCTGAATCCTGAACCTGAGTTCCAAAGTATGTTAATAGATGA
AAGGGTACGATGTGAACATCATAAACATAATTATCAGGCTCTGAAAATTGAACACAAAAGGTTG
CAGGAAGAATATGTAAAATCACAAAATGAACTTAAGCGTGTGTTAAATGAAAAACAAACAAACC
AGGAAAAATTCCAACTGCTCCTTGAAGAATTAAGGGGGGAATTAGTAGAGAAAGTTAAGGACAT
GGAAGCAATGAAACTGCAGATATTAACACCACAAAAATTGGAATTGGTAAAAGCCCAACTACAA
CAAGAATTAGAAGCTCCAATGCGAGAACGTTTTCGGACTCTTGATGAAGAAGTGGAAAGGTACA
GAGCTGAATACAACAAGCTCCGCTACGAGCACACATTCCTCAAGTCAGAGTTTGAACACCAGAA
GGAAGAGCTTACTCGTATTTCAGAAGAAGAAAAAATGAAATACAAGTCAGAGGTTGCACGACTG
GAGAAGGATAAAGAGGAACTACATAACCAGCTGCTTAGTGTTGATCCCACAAGAGATAGCAAAC
GAGTGGAGCAACTTGTTCGAGAAAAAACCCATTTGCTTCAGAAATTGAAAAGTTTAGAGGCTGA
AGTAGCAGAATTAAGGGCTGAGAAAGAGAATTCTGGTGCTCAGGTAGAAAATGTCCAAAGAATA
CAAGTGAGGCAGTTGGCTGAGATGCAGGCCACTCTCAGATCCTTGGAGGCTGAAAAGCAGTCAG
CTAAACTACAGGCTGAACGCCTAGAAAAAGAGCTACAATCAAGCAACGAACAAAACACCTGTTT
AATTAGTAAATTGCATAAGGCTGACCGAGAAATAAGCACGCTGACTAGTCAGGTGAAAGAGCTT
AAACATGCAAACAAGCTCGAAATAACTGACGTCAAACTGGAGGCTGCAAGAGCGAAGAGTGAGC
TAGAGCGAGAGAGGAATAAGATCCAAAGTGAACTCGATGGACTGCAGTCAGACAATGAAATTCT
CAAGTCGACTGTTGAACACCACAAAGTGCTCTTGGTGGAAAAAGATCGTGAATTAATACGTAAA
GTACAAGCTGCCAAGGAAGAAGGTTACCAGAAACTTGTGGTCTTGCAAGATGAAAAGCTAGAAC
TTGAGAACAGATTATCAGACTTAGAGAAAATGAAAGTGGAGCATGATGTCTGGAGGCAGTCGGA
AAAGGATCAGTGTGAAGAGAAGCTGCGGGCCTCCCAGGCGGCAGAGGAGGCAGCCCGGAGGGAA
CTGCAGAGCATTAGGTTAAAACTTCAACAACAAATTGTGAATACCGAAAAAGCAGAGAAAGAAA
AACTTGAAAATTCTGAACTGAAACAGCAAATCAGTCATTTACAGATCCAAGTGACCTCACTGAC
GCAGTCAGAGAATGACTTGCTGAATTCAAACCAAATGCTGAAGGACATGGTGGAGAGGTTAAAG
CAAGAGTGCCGACATTTAAGAAGCCAAGCTGAAAAAGTGCAACTAGAAGTTGAAAAGACACTGG
AGGAAAAGCAGATACAGTGGTTGGAAGAAAAGCATAAGCTTCATGAGCGTATCACAGACAGAGA
GGAAAAGTACAATCAAGCAAAAGAGAAACTGCAGCGGGCAGCAACTGCTCAGAAAAAGAGAAAA
TCTCTTCATGAGAATAAATTGAAGAGACTGCAGGAGAAAGTGGAAGTCTTGGAGGCAAAGAAAG
AAGAATTAGAGACAGAAAACCAGGTGTTAAATAGACAAAATGTTCCATTTGAAGAATATACAAG
GCTTCAGAAACGACTAAAGGACATACAGAGAAGACATAATGAATTTCGAAGTCTAATCTTGGTT
CCTAACATGCCTCCCGCAGCATCGGTCAATCCTGCTAACTTCCAGTCCTCAGCTATAGTTCCTG
GAGTGGAACTCTCCTTTCCCCCTCATCTGCAGGAAGAACAGCATCAAAGAGAACTCTCTCTCCT
TCGCAAAAGACTGGAAGAGCTAGAAACTACACAAAGAAAACAACTAGAGGAACTTGGATCTCCC
GGGGAGTGATGCTGGAAGAAAGGCAAAGCCAGAAACTCAATAAAGTATGACGTTTAACGTGTGG
CCTCCAGGTGCTTTCTTACTGTTTGCCAAAATTGAGCTGCCTCAAGACAAGGTACTAGCTATGC
GCTGCACTGCAAGGGCTCCAAGATTTTAGGATAATACTAAGAAAAATGAAGTATTCATATATTT
AGGACATGCATTGATAATCTTTTGACAATGCAAAAATAAAAGGAACTAGTTAATTAAAAATCAA
GTTTTCAAATTTATTAATTTTTATTTTGTTGATATTTTCTGACATTTTGCTTGAAATATATCCA
TCCTGAAGTCCCTTTTCCTTATCTTTGAAATGTCTCCTTGGTAATAACAAGATCAGTAAATATC
TCCTTTCCTATATATAAAAGTTTTGGAAAAGATGGTCATTTAAAAGTATAAAAAACACTTAAAA
GTTTCTAAACATGTATATTATAGAAATCCTTTCCTAAAAGCTGTGCATTTAATTTATTGAATAA
CTTAATAAATATTTTTGTATCTATGCTA

hide sequence

RefSeq Acc Id:

XM_039079678 ⟹ XP_038935606

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	31,167,496 - 31,276,508 (+)	NCBI
mRatBN7.2	7	29,280,358 - 29,389,570 (+)	NCBI

RefSeq Acc Id:

XM_063264026 ⟹ XP_063120096

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	31,167,721 - 31,276,508 (+)	NCBI

RefSeq Acc Id:

XM_063264027 ⟹ XP_063120097

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	31,167,203 - 31,276,508 (+)	NCBI

RefSeq Acc Id:

XM_063264028 ⟹ XP_063120098

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	31,190,442 - 31,276,508 (+)	NCBI

RefSeq Acc Id:

XM_063264030 ⟹ XP_063120100

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	31,167,496 - 31,276,508 (+)	NCBI

RefSeq Acc Id:

XM_063264031 ⟹ XP_063120101

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	31,167,198 - 31,276,508 (+)	NCBI

RefSeq Acc Id:

XM_063264032 ⟹ XP_063120102

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	31,167,496 - 31,276,508 (+)	NCBI

RefSeq Acc Id:

XM_063264033 ⟹ XP_063120103

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	31,167,713 - 31,276,508 (+)	NCBI

RefSeq Acc Id:

XM_063264034 ⟹ XP_063120104

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	31,167,496 - 31,276,508 (+)	NCBI

RefSeq Acc Id:

XM_063264035 ⟹ XP_063120105

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	31,167,496 - 31,276,508 (+)	NCBI

RefSeq Acc Id:

XM_063264036 ⟹ XP_063120106

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	31,167,496 - 31,276,508 (+)	NCBI

RefSeq Acc Id:

XM_063264037 ⟹ XP_063120107

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	31,167,496 - 31,276,508 (+)	NCBI

RefSeq Acc Id:

XM_063264038 ⟹ XP_063120108

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	31,167,496 - 31,251,066 (+)	NCBI

RefSeq Acc Id:

XM_063264039 ⟹ XP_063120109

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	31,167,496 - 31,251,066 (+)	NCBI

RefSeq Acc Id:

XM_063264040 ⟹ XP_063120110

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	31,209,802 - 31,276,508 (+)	NCBI

RefSeq Acc Id:

XM_063264041 ⟹ XP_063120111

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	31,167,496 - 31,251,066 (+)	NCBI

RefSeq Acc Id:

XM_063264042 ⟹ XP_063120112

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	31,167,496 - 31,251,066 (+)	NCBI

RefSeq Acc Id:

XM_063264043 ⟹ XP_063120113

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	31,167,496 - 31,249,045 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001014288	(Get FASTA)	NCBI Sequence Viewer
	XP_008763539	(Get FASTA)	NCBI Sequence Viewer
	XP_017450505	(Get FASTA)	NCBI Sequence Viewer
	XP_038935606	(Get FASTA)	NCBI Sequence Viewer
	XP_063120096	(Get FASTA)	NCBI Sequence Viewer
	XP_063120097	(Get FASTA)	NCBI Sequence Viewer
	XP_063120098	(Get FASTA)	NCBI Sequence Viewer
	XP_063120100	(Get FASTA)	NCBI Sequence Viewer
	XP_063120101	(Get FASTA)	NCBI Sequence Viewer
	XP_063120102	(Get FASTA)	NCBI Sequence Viewer
	XP_063120103	(Get FASTA)	NCBI Sequence Viewer
	XP_063120104	(Get FASTA)	NCBI Sequence Viewer
	XP_063120105	(Get FASTA)	NCBI Sequence Viewer
	XP_063120106	(Get FASTA)	NCBI Sequence Viewer
	XP_063120107	(Get FASTA)	NCBI Sequence Viewer
	XP_063120108	(Get FASTA)	NCBI Sequence Viewer
	XP_063120109	(Get FASTA)	NCBI Sequence Viewer
	XP_063120110	(Get FASTA)	NCBI Sequence Viewer
	XP_063120111	(Get FASTA)	NCBI Sequence Viewer
	XP_063120112	(Get FASTA)	NCBI Sequence Viewer
	XP_063120113	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH81969	(Get FASTA)	NCBI Sequence Viewer
	EDM16874	(Get FASTA)	NCBI Sequence Viewer
	EDM16875	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000031786
	ENSRNOP00000031786.4
GenBank Protein	Q66H89	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001014288 ⟸ NM_001014266

- UniProtKB:

Q66H89 (UniProtKB/Swiss-Prot), A6IG23 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDTFPSIFPPGGDSRLNPEPEFQSMLIDERVRCEHHKHNYQALKIEHKRLQEEYVKSQNELKRV
LNEKQTNQEKFQLLLEELRGELVEKVKDMEAMKLQILTPQKLELVKAQLQQELEAPMRERFRTL
DEEVERYRAEYNKLRYEHTFLKSEFEHQKEELTRISEEEKMKYKSEVARLEKDKEELHNQLLSV
DPTRDSKRVEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQRIQVRQLAEMQATLRS
LEAEKQSAKLQAERLEKELQSSNEQNTCLISKLHKADREISTLTSQVKELKHANKLEITDVKLE
AARAKSELERERNKIQSELDGLQSDNEILKSTVEHHKVLLVEKDRELIRKVQAAKEEGYQKLVV
LQDEKLELENRLSDLEKMKVEHDVWRQSEKDQCEEKLRASQAAEEAARRELQSIRLKLQQQIVN
TEKAEKEKLENSELKQQISHLQIQVTSLTQSENDLLNSNQMLKDMVERLKQECRHLRSQAEKVQ
LEVEKTLEEKQIQWLEEKHKLHERITDREEKYNQAKEKLQRAATAQKKRKSLHENKLKRLQEKV
EVLEAKKEELETENQVLNRQNVPFEEYTRLQKRLKDIQRRHNEFRSLILVPNMPPAASVNPANF
QSSAIVPGVELSFPPHLQEEQHQRELSLLRKRLEELETTQRKQLEELGSPGE

hide sequence

RefSeq Acc Id:

XP_008763539 ⟸ XM_008765317

- Peptide Label:

isoform X4

- Sequence:

show sequence

MDTFPSIFPPGGDSRLNPEPEFQSMLIDERVRCEHHKHNYQALKIEHKRLQEEYVKSQNELKRV
LNEKQTNQEKFQLLLEELRGELVEKVKDMEAMKLQILTPQKLELVKAQLQQELEAPMRERFRTL
DEEVERYRAEYNKLRYEHTFLKSEFEHQKEELTRISEEEKMKYKSEVARLEKDKEELHNQLLSV
DPTRDSKRVEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQRIQVRQLAEMQATLRS
LEAEKQSAKLQAERLEKELQSSNEQNTCLISKLHKADREISTLTSQVKELKHANKLEITDVKLE
AARAKSELERERNKIQSELDGLQSDNEILKSTVEHHKVLLVEKDRELIRKVQAAKEEGYQKLVV
LQDEKLELENRLSDLEKMKVEHDVWRQSEKDQCEEKLRASQAAEEAARRELQSIRLKLQQQIVN
TEKAEKEKLENSELKQQISHLQIQVTSLTQSENDLLNSNQMLKDMVERLKQECRHLRSQAEKVQ
LEVEKTLEEKQIQWLEEKHKLHERITDREEKYNQAKEKLQRAATAQKKRKSLHENKLKRLQEKV
EVLEAKKEELETENQVLNRQNVPFEEYTRLQKRLKDIQRRHNEFRSLILVPNMPPAASVNPANF
QSSAIVPGVELSFPPHLQNSIKENSLSFAKDWKS

hide sequence

RefSeq Acc Id:	XP_017450505 ⟸ XM_017595016
- Peptide Label:	isoform X2
- UniProtKB:	Q66H89 (UniProtKB/Swiss-Prot), A6IG23 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDTFPSIFPPGGDSRLNPEPEFQSMLIDERVRCEHHKHNYQALKIEHKRLQEEYVKSQNELKRV LNEKQTNQEKFQLLLEELRGELVEKVKDMEAMKLQILTPQKLELVKAQLQQELEAPMRERFRTL DEEVERYRAEYNKLRYEHTFLKSEFEHQKEELTRISEEEKMKYKSEVARLEKDKEELHNQLLSV DPTRDSKRVEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQRIQVRQLAEMQATLRS LEAEKQSAKLQAERLEKELQSSNEQNTCLISKLHKADREISTLTSQVKELKHANKLEITDVKLE AARAKSELERERNKIQSELDGLQSDNEILKSTVEHHKVLLVEKDRELIRKVQAAKEEGYQKLVV LQDEKLELENRLSDLEKMKVEHDVWRQSEKDQCEEKLRASQAAEEAARRELQSIRLKLQQQIVN TEKAEKEKLENSELKQQISHLQIQVTSLTQSENDLLNSNQMLKDMVERLKQECRHLRSQAEKVQ LEVEKTLEEKQIQWLEEKHKLHERITDREEKYNQAKEKLQRAATAQKKRKSLHENKLKRLQEKV EVLEAKKEELETENQVLNRQNVPFEEYTRLQKRLKDIQRRHNEFRSLILVPNMPPAASVNPANF QSSAIVPGVELSFPPHLQEEQHQRELSLLRKRLEELETTQRKQLEELGSPGE hide sequence

Ensembl Acc Id:

ENSRNOP00000031786 ⟸ ENSRNOT00000034639

RefSeq Acc Id:	XP_038935606 ⟸ XM_039079678
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063120101 ⟸ XM_063264031
- Peptide Label:	isoform X2
- UniProtKB:	Q66H89 (UniProtKB/Swiss-Prot), A6IG23 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120097 ⟸ XM_063264027
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063120100 ⟸ XM_063264030
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063120102 ⟸ XM_063264032
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063120106 ⟸ XM_063264036
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063120105 ⟸ XM_063264035
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063120107 ⟸ XM_063264037
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063120104 ⟸ XM_063264034
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063120112 ⟸ XM_063264042
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063120111 ⟸ XM_063264041
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063120108 ⟸ XM_063264038
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063120109 ⟸ XM_063264039
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063120113 ⟸ XM_063264043
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063120103 ⟸ XM_063264033
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063120096 ⟸ XM_063264026
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063120098 ⟸ XM_063264028
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063120110 ⟸ XM_063264040
- Peptide Label:	isoform X12

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q66H89-F1-model_v2	AlphaFold	Q66H89	1-692	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359593	AgrOrtholog
BioCyc Gene	G2FUF-34357	BioCyc
Ensembl Genes	ENSRNOG00000007859	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000034639	ENTREZGENE
	ENSRNOT00000034639.5	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7125504	IMAGE-MGC_LOAD
InterPro	Centro_Cilium_Assembly	UniProtKB/Swiss-Prot
KEGG Report	rno:366872	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94102	IMAGE-MGC_LOAD
NCBI Gene	366872	ENTREZGENE
PANTHER	NY-REN-58 ANTIGEN	UniProtKB/Swiss-Prot
	PTHR23170:SF2	UniProtKB/Swiss-Prot
PhenoGen	Cep83	PhenoGen
RatGTEx	ENSRNOG00000007859	RatGTEx
UniProt	A6IG23	ENTREZGENE, UniProtKB/TrEMBL
	CEP83_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-03-12	Cep83	centrosomal protein 83	Ccdc41	coiled-coil domain containing 41	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Ccdc41	coiled-coil domain containing 41	RGD1359593	similar to RIKEN cDNA 4921537D05	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-11-17	RGD1359593	similar to RIKEN cDNA 4921537D05			Symbol updated	1299863	APPROVED
2005-07-29	LOC366872	similar to RIKEN cDNA 4921537D05			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM