Fam149b1 (family with sequence similarity 149, member B1) - Rat Genome Database

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Gene: Fam149b1 (family with sequence similarity 149, member B1) Rattus norvegicus
Analyze
Symbol: Fam149b1
Name: family with sequence similarity 149, member B1
RGD ID: 1359592
Description: Predicted to be involved in cilium assembly and protein localization to cilium. Predicted to be located in cilium. Human ortholog(s) of this gene implicated in Joubert syndrome. Orthologous to human FAM149B1 (family with sequence similarity 149 member B1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical LOC289900; hypothetical protein LOC289900; LOC289900; primary cilium assembly protein FAM149B1; RGD1359592; similar to KIAA0974 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8153,978,377 - 4,016,323 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl153,978,377 - 4,016,317 (-)EnsemblGRCr8
mRatBN7.2153,929,190 - 3,967,140 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl153,929,190 - 3,966,997 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx153,939,296 - 3,977,235 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0155,325,717 - 5,363,656 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0153,938,113 - 3,976,051 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0154,361,860 - 4,399,746 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl154,361,862 - 4,399,685 (-)Ensemblrn6Rnor6.0
Rnor_5.0158,463,358 - 8,500,791 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4154,157,828 - 4,196,419 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera15628,607 - 665,881 (+)NCBICelera
RGSC_v3.1154,157,829 - 4,196,419 (-)NCBI
Cytogenetic Map15p16NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cilium  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
Fam149b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8153,978,377 - 4,016,323 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl153,978,377 - 4,016,317 (-)EnsemblGRCr8
mRatBN7.2153,929,190 - 3,967,140 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl153,929,190 - 3,966,997 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx153,939,296 - 3,977,235 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0155,325,717 - 5,363,656 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0153,938,113 - 3,976,051 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0154,361,860 - 4,399,746 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl154,361,862 - 4,399,685 (-)Ensemblrn6Rnor6.0
Rnor_5.0158,463,358 - 8,500,791 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4154,157,828 - 4,196,419 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera15628,607 - 665,881 (+)NCBICelera
RGSC_v3.1154,157,829 - 4,196,419 (-)NCBI
Cytogenetic Map15p16NCBI
FAM149B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381073,168,119 - 73,244,504 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1073,168,119 - 73,244,504 (+)Ensemblhg38GRCh38
GRCh371074,927,877 - 75,004,262 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361074,597,883 - 74,674,446 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341074,604,454 - 74,674,268NCBI
Celera1068,213,504 - 68,287,562 (+)NCBICelera
Cytogenetic Map10q22.2NCBI
HuRef1068,921,813 - 68,995,799 (+)NCBIHuRef
CHM1_11075,209,625 - 75,283,656 (+)NCBICHM1_1
T2T-CHM13v2.01074,039,474 - 74,115,884 (+)NCBIT2T-CHM13v2.0
Fam149b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391420,398,221 - 20,433,559 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1420,398,230 - 20,433,559 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381420,348,158 - 20,383,491 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1420,348,162 - 20,383,491 (+)Ensemblmm10GRCm38
MGSCv371421,167,384 - 21,202,713 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361419,130,226 - 19,172,043 (+)NCBIMGSCv36mm8
Celera1416,728,980 - 16,764,293 (+)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1411.52NCBI
Fam149b1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543718,491,975 - 18,537,626 (-)Ensembl
ChiLan1.0NW_00495543718,492,459 - 18,537,629 (-)NCBIChiLan1.0ChiLan1.0
FAM149B1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2885,342,998 - 85,418,105 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11085,348,321 - 85,423,428 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01069,714,749 - 69,789,835 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11072,175,086 - 72,249,611 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1072,175,085 - 72,249,611 (+)EnsemblpanPan2panpan1.1
FAM149B1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1423,742,456 - 23,820,160 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl423,742,590 - 23,820,965 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha423,880,625 - 23,958,305 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0424,028,903 - 24,101,552 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl424,028,950 - 24,101,547 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1423,927,354 - 23,999,161 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0424,127,024 - 24,198,419 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0424,482,054 - 24,554,453 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fam149b1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721357,302,430 - 57,353,461 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365215,795,820 - 5,846,193 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365215,795,821 - 5,846,195 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM149B1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1475,992,765 - 76,064,063 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11475,992,657 - 76,065,822 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21482,092,379 - 82,128,394 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM149B1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1958,029,800 - 58,108,668 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl958,030,946 - 58,109,365 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604818,615,732 - 18,694,728 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam149b1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247546,861,636 - 6,911,340 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247546,861,455 - 6,912,991 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Fam149b1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11290,144,514 - 90,182,733 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fam149b1
311 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:151
Count of miRNA genes:123
Interacting mature miRNAs:132
Transcripts:ENSRNOT00000065858
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
1300142Bp191Blood pressure QTL 1913.14arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)15115177511Rat

Markers in Region
RH132988  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2153,940,378 - 3,940,560 (+)MAPPERmRatBN7.2
Rnor_6.0154,373,048 - 4,373,229NCBIRnor6.0
Rnor_5.0158,474,546 - 8,474,727UniSTSRnor5.0
RGSC_v3.4154,169,016 - 4,169,197UniSTSRGSC3.4
Celera15654,512 - 654,693UniSTS
RH 3.4 Map1568.1UniSTS
Cytogenetic Map15p16UniSTS
RH142535  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2153,955,500 - 3,955,625 (+)MAPPERmRatBN7.2
Rnor_6.0154,388,118 - 4,388,242NCBIRnor6.0
Rnor_5.0158,489,146 - 8,489,270UniSTSRnor5.0
RGSC_v3.4154,184,948 - 4,185,072UniSTSRGSC3.4
Celera15639,938 - 640,062UniSTS
RH 3.4 Map1567.2UniSTS
Cytogenetic Map15p16UniSTS
AA850355  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2153,959,759 - 3,959,850 (+)MAPPERmRatBN7.2
Rnor_6.0154,392,377 - 4,392,467NCBIRnor6.0
Rnor_5.0158,493,405 - 8,493,495UniSTSRnor5.0
RGSC_v3.4154,189,207 - 4,189,297UniSTSRGSC3.4
Celera15635,713 - 635,803UniSTS
RH 3.4 Map1567.2UniSTS
Cytogenetic Map15p16UniSTS
AI228245  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2153,940,087 - 3,940,253 (+)MAPPERmRatBN7.2
Rnor_6.0154,372,757 - 4,372,922NCBIRnor6.0
Rnor_5.0158,474,255 - 8,474,420UniSTSRnor5.0
RGSC_v3.4154,168,725 - 4,168,890UniSTSRGSC3.4
Celera15654,819 - 654,984UniSTS
RH 3.4 Map1565.5UniSTS
Cytogenetic Map15p16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
23 13 84 214 91 90 59 158 59 6 488 285 22 192 113 124 31 34 34

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001013878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063274067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC087126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000065858   ⟹   ENSRNOP00000063752
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl153,978,377 - 4,016,317 (-)Ensembl
mRatBN7.2 Ensembl153,929,192 - 3,966,976 (-)Ensembl
Rnor_6.0 Ensembl154,361,862 - 4,399,589 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079812   ⟹   ENSRNOP00000068596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl153,978,377 - 4,016,317 (-)Ensembl
mRatBN7.2 Ensembl153,929,190 - 3,966,997 (-)Ensembl
Rnor_6.0 Ensembl154,362,153 - 4,399,685 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095550   ⟹   ENSRNOP00000076592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl153,978,377 - 4,008,859 (-)Ensembl
mRatBN7.2 Ensembl153,929,190 - 3,959,532 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108334   ⟹   ENSRNOP00000097381
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl153,978,377 - 4,016,317 (-)Ensembl
mRatBN7.2 Ensembl153,929,190 - 3,966,997 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111751   ⟹   ENSRNOP00000090775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl153,994,466 - 4,016,317 (-)Ensembl
mRatBN7.2 Ensembl153,945,280 - 3,966,997 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116953   ⟹   ENSRNOP00000083597
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl153,978,377 - 4,016,317 (-)Ensembl
mRatBN7.2 Ensembl153,929,190 - 3,966,997 (-)Ensembl
RefSeq Acc Id: NM_001013878   ⟹   NP_001013900
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,978,377 - 4,016,317 (-)NCBI
mRatBN7.2153,929,190 - 3,967,137 (-)NCBI
Rnor_6.0154,361,860 - 4,399,589 (-)NCBI
Rnor_5.0158,463,358 - 8,500,791 (-)NCBI
RGSC_v3.4154,157,828 - 4,196,419 (-)RGD
Celera15628,607 - 665,881 (+)RGD
Sequence:
RefSeq Acc Id: NM_001401019   ⟹   NP_001387948
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,978,377 - 4,016,317 (-)NCBI
mRatBN7.2153,929,190 - 3,967,137 (-)NCBI
RefSeq Acc Id: XM_017599604   ⟹   XP_017455093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,978,377 - 4,016,323 (-)NCBI
mRatBN7.2153,929,190 - 3,967,138 (-)NCBI
Rnor_6.0154,361,860 - 4,399,746 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599605   ⟹   XP_017455094
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,993,823 - 4,016,323 (-)NCBI
mRatBN7.2153,944,637 - 3,967,138 (-)NCBI
Rnor_6.0154,377,306 - 4,399,745 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599606   ⟹   XP_017455095
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,987,551 - 4,016,323 (-)NCBI
mRatBN7.2153,938,365 - 3,967,138 (-)NCBI
Rnor_6.0154,371,072 - 4,399,746 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599607   ⟹   XP_017455096
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,986,402 - 4,016,323 (-)NCBI
mRatBN7.2153,937,215 - 3,967,138 (-)NCBI
Rnor_6.0154,369,899 - 4,399,746 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039093079   ⟹   XP_038949007
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,978,377 - 4,016,138 (-)NCBI
mRatBN7.2153,929,593 - 3,966,962 (-)NCBI
RefSeq Acc Id: XM_039093081   ⟹   XP_038949009
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,978,377 - 4,016,323 (-)NCBI
mRatBN7.2153,929,190 - 3,967,137 (-)NCBI
RefSeq Acc Id: XM_039093082   ⟹   XP_038949010
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,989,497 - 4,016,323 (-)NCBI
mRatBN7.2153,940,330 - 3,967,139 (-)NCBI
RefSeq Acc Id: XM_039093083   ⟹   XP_038949011
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,983,291 - 4,016,323 (-)NCBI
mRatBN7.2153,934,104 - 3,967,139 (-)NCBI
RefSeq Acc Id: XM_039093084   ⟹   XP_038949012
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,983,862 - 4,016,323 (-)NCBI
mRatBN7.2153,934,677 - 3,967,138 (-)NCBI
RefSeq Acc Id: XM_063274064   ⟹   XP_063130134
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,978,377 - 4,008,705 (-)NCBI
RefSeq Acc Id: XM_063274065   ⟹   XP_063130135
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,978,377 - 4,016,138 (-)NCBI
RefSeq Acc Id: XM_063274066   ⟹   XP_063130136
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,978,377 - 4,013,254 (-)NCBI
RefSeq Acc Id: XM_063274067   ⟹   XP_063130137
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8153,983,891 - 4,016,323 (-)NCBI
RefSeq Acc Id: NP_001013900   ⟸   NM_001013878
- Peptide Label: isoform 1
- UniProtKB: Q5PQL8 (UniProtKB/Swiss-Prot),   A0A8I6AUW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455093   ⟸   XM_017599604
- Peptide Label: isoform X1
- UniProtKB: A6KKM3 (UniProtKB/TrEMBL),   A0A8I5ZZN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455096   ⟸   XM_017599607
- Peptide Label: isoform X8
- UniProtKB: A6KKM4 (UniProtKB/TrEMBL),   A0A8I6GJ53 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455095   ⟸   XM_017599606
- Peptide Label: isoform X8
- UniProtKB: A6KKM4 (UniProtKB/TrEMBL),   A0A8I6GJ53 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455094   ⟸   XM_017599605
- Peptide Label: isoform X8
- UniProtKB: A6KKM4 (UniProtKB/TrEMBL),   A0A8I6GJ53 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068596   ⟸   ENSRNOT00000079812
Ensembl Acc Id: ENSRNOP00000063752   ⟸   ENSRNOT00000065858
RefSeq Acc Id: XP_038949009   ⟸   XM_039093081
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038949007   ⟸   XM_039093079
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038949011   ⟸   XM_039093083
- Peptide Label: isoform X7
- UniProtKB: A0A8I6GJ53 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949012   ⟸   XM_039093084
- Peptide Label: isoform X9
- UniProtKB: A0A8I6GJ53 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949010   ⟸   XM_039093082
- Peptide Label: isoform X6
- UniProtKB: A0A8I6GJ53 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000090775   ⟸   ENSRNOT00000111751
Ensembl Acc Id: ENSRNOP00000083597   ⟸   ENSRNOT00000116953
Ensembl Acc Id: ENSRNOP00000097381   ⟸   ENSRNOT00000108334
Ensembl Acc Id: ENSRNOP00000076592   ⟸   ENSRNOT00000095550
RefSeq Acc Id: NP_001387948   ⟸   NM_001401019
- Peptide Label: isoform 2
- UniProtKB: A0A0G2JT74 (UniProtKB/TrEMBL),   A6KKM2 (UniProtKB/TrEMBL),   A0A8I6AUW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130135   ⟸   XM_063274065
- Peptide Label: isoform X3
- UniProtKB: A0A8I5YBR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130136   ⟸   XM_063274066
- Peptide Label: isoform X5
- UniProtKB: Q5PQL8 (UniProtKB/Swiss-Prot),   A0A8I6AUW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130134   ⟸   XM_063274064
- Peptide Label: isoform X3
- UniProtKB: A0A8I5YBR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130137   ⟸   XM_063274067
- Peptide Label: isoform X7
- UniProtKB: A0A8I6GJ53 (UniProtKB/TrEMBL)
Protein Domains
DUF3719

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5PQL8-F1-model_v2 AlphaFold Q5PQL8 1-482 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699572
Promoter ID:EPDNEW_R10092
Type:multiple initiation site
Name:Fam149b1_1
Description:family with sequence similarity 149, member B1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0154,399,762 - 4,399,822EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359592 AgrOrtholog
BioCyc Gene G2FUF-14534 BioCyc
Ensembl Genes ENSRNOG00000006554 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000065858 ENTREZGENE
  ENSRNOT00000065858.3 UniProtKB/Swiss-Prot
  ENSRNOT00000079812 ENTREZGENE
  ENSRNOT00000095550 ENTREZGENE
  ENSRNOT00000111751 ENTREZGENE
  ENSRNOT00000116953 ENTREZGENE
IMAGE_CLONE IMAGE:7111155 IMAGE-MGC_LOAD
InterPro DUF3719 UniProtKB/Swiss-Prot
  FAM149 UniProtKB/Swiss-Prot
KEGG Report rno:289900 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94893 IMAGE-MGC_LOAD
NCBI Gene 289900 ENTREZGENE
PANTHER PRIMARY CILIUM ASSEMBLY PROTEIN FAM149B1 UniProtKB/Swiss-Prot
  PTHR31997 UniProtKB/Swiss-Prot
Pfam DUF3719 UniProtKB/Swiss-Prot
PhenoGen Fam149b1 PhenoGen
RatGTEx ENSRNOG00000006554 RatGTEx
UniProt A0A0G2JT74 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5YBR9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZZN3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AUW2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GJ53 ENTREZGENE, UniProtKB/TrEMBL
  A6KKM2 ENTREZGENE, UniProtKB/TrEMBL
  A6KKM3 ENTREZGENE, UniProtKB/TrEMBL
  A6KKM4 ENTREZGENE, UniProtKB/TrEMBL
  F149B_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-31 Fam149b1  family with sequence similarity 149, member B1  RGD1359592  similar to KIAA0974 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 RGD1359592  similar to KIAA0974 protein      Symbol and Name updated 1299863 APPROVED
2005-07-29 LOC289900  hypothetical LOC289900      Symbol and Name status set to provisional 70820 PROVISIONAL