Dnase1l1 (deoxyribonuclease 1-like 1) - Rat Genome Database

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Gene: Dnase1l1 (deoxyribonuclease 1-like 1) Rattus norvegicus
Analyze
Symbol: Dnase1l1
Name: deoxyribonuclease 1-like 1
RGD ID: 1359588
Description: Predicted to enable DNA binding activity and deoxyribonuclease I activity. Predicted to be involved in DNA catabolic process. Predicted to be located in endoplasmic reticulum. Predicted to be active in nucleus. Orthologous to human DNASE1L1 (deoxyribonuclease 1 like 1); INTERACTS WITH all-trans-retinoic acid; bisphenol A; ketoconazole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: deoxyribonuclease I-like 1; deoxyribonuclease-1-like 1; DNase I-like 1; DNase X; LOC363522; similar to RIKEN cDNA 2310005K03
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X157,208,230 - 157,216,812 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX157,208,230 - 157,216,711 (-)EnsemblGRCr8
mRatBN7.2X152,056,942 - 152,065,518 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX152,056,942 - 152,065,518 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX154,198,071 - 154,206,552 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X157,761,304 - 157,769,785 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X155,433,103 - 155,441,584 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X156,429,521 - 156,438,066 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX156,429,585 - 156,438,066 (+)Ensemblrn6Rnor6.0
Rnor_5.01152,169,678 - 152,178,213 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X160,327,966 - 160,336,447 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1135,831,332 - 135,839,813 (+)NCBICelera
RGSC_v3.1X160,404,391 - 160,412,828 (+)NCBI
Cytogenetic MapXq37NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
endoplasmic reticulum  (IEA,ISO)
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:16107205   PMID:23376485  


Genomics

Comparative Map Data
Dnase1l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X157,208,230 - 157,216,812 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX157,208,230 - 157,216,711 (-)EnsemblGRCr8
mRatBN7.2X152,056,942 - 152,065,518 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX152,056,942 - 152,065,518 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX154,198,071 - 154,206,552 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X157,761,304 - 157,769,785 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X155,433,103 - 155,441,584 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X156,429,521 - 156,438,066 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX156,429,585 - 156,438,066 (+)Ensemblrn6Rnor6.0
Rnor_5.01152,169,678 - 152,178,213 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X160,327,966 - 160,336,447 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1135,831,332 - 135,839,813 (+)NCBICelera
RGSC_v3.1X160,404,391 - 160,412,828 (+)NCBI
Cytogenetic MapXq37NCBI
DNASE1L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X154,401,236 - 154,412,101 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX154,401,236 - 154,412,114 (-)Ensemblhg38GRCh38
GRCh37X153,629,577 - 153,640,438 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X153,282,773 - 153,293,621 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34X153,150,425 - 153,158,422NCBI
CeleraX153,790,635 - 153,801,484 (-)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX142,206,968 - 142,217,816 (-)NCBIHuRef
CHM1_1X153,541,222 - 153,552,074 (-)NCBICHM1_1
T2T-CHM13v2.0X152,637,756 - 152,648,607 (-)NCBIT2T-CHM13v2.0
Dnase1l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X73,316,823 - 73,325,939 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX73,316,823 - 73,325,943 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38X74,273,217 - 74,282,333 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX74,273,217 - 74,282,337 (-)Ensemblmm10GRCm38
MGSCv37X71,518,556 - 71,527,672 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X70,525,938 - 70,534,454 (-)NCBIMGSCv36mm8
CeleraX65,526,994 - 65,536,124 (-)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.94NCBI
Dnase1l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580907,582 - 914,243 (-)Ensembl
ChiLan1.0NW_004955580907,056 - 913,604 (-)NCBIChiLan1.0ChiLan1.0
DNASE1L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X154,376,064 - 154,385,167 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X154,379,690 - 154,388,048 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X143,842,920 - 143,851,795 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X153,712,050 - 153,725,868 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX153,712,054 - 153,725,868 (-)EnsemblpanPan2panpan1.1
DNASE1L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X122,101,992 - 122,109,240 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX122,101,992 - 122,109,165 (-)EnsemblcanFam3CanFam3.1
ROS_Cfam_1.0X125,243,686 - 125,250,933 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX125,243,302 - 125,250,882 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X121,012,760 - 121,020,007 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X123,527,626 - 123,534,873 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X123,289,507 - 123,296,773 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dnase1l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X119,413,626 - 119,420,791 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368091,151,202 - 1,159,029 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049368091,151,312 - 1,159,017 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNASE1L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,931,410 - 124,939,965 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X124,931,410 - 124,937,569 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DNASE1L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606566,628,194 - 66,636,944 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnase1l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624946864,657 - 870,396 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624946858,638 - 869,859 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Dnase1l1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X128,276,493 - 128,285,466 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:36
Interacting mature miRNAs:39
Transcripts:ENSRNOT00000056285
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX105359969157758123Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X118973754157758123Rat

Markers in Region
RH137735  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X152,059,445 - 152,059,635 (-)MAPPERmRatBN7.2
Rnor_6.0X156,435,373 - 156,435,562NCBIRnor6.0
Rnor_5.01152,175,520 - 152,175,709UniSTSRnor5.0
RGSC_v3.4X160,333,754 - 160,333,943UniSTSRGSC3.4
Celera1135,837,120 - 135,837,309UniSTS
Cytogenetic MapXq37UniSTS
RH139827  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X152,056,983 - 152,057,167 (-)MAPPERmRatBN7.2
Rnor_6.0X156,437,841 - 156,438,024NCBIRnor6.0
Rnor_5.01152,177,988 - 152,178,171UniSTSRnor5.0
RGSC_v3.4X160,336,222 - 160,336,405UniSTSRGSC3.4
Celera1135,839,588 - 135,839,771UniSTS
Cytogenetic MapXq37UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000077322   ⟹   ENSRNOP00000073264
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX157,208,230 - 157,216,666 (-)Ensembl
mRatBN7.2 EnsemblX152,056,942 - 152,065,379 (-)Ensembl
Rnor_6.0 EnsemblX156,429,630 - 156,438,066 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000083203   ⟹   ENSRNOP00000073157
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX157,208,230 - 157,216,711 (-)Ensembl
mRatBN7.2 EnsemblX152,056,942 - 152,065,424 (-)Ensembl
Rnor_6.0 EnsemblX156,429,585 - 156,438,066 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119460   ⟹   ENSRNOP00000089112
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX157,208,230 - 157,216,711 (-)Ensembl
mRatBN7.2 EnsemblX152,056,954 - 152,065,518 (-)Ensembl
RefSeq Acc Id: NM_001014223   ⟹   NP_001014245
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X157,208,230 - 157,216,711 (-)NCBI
mRatBN7.2X152,056,942 - 152,065,424 (-)NCBI
Rnor_6.0X156,429,585 - 156,438,066 (+)NCBI
Rnor_5.01152,169,678 - 152,178,213 (+)NCBI
RGSC_v3.4X160,327,966 - 160,336,447 (+)RGD
Celera1135,831,332 - 135,839,813 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006229602   ⟹   XP_006229664
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X157,208,235 - 157,216,812 (-)NCBI
mRatBN7.2X152,056,942 - 152,065,518 (-)NCBI
Rnor_6.0X156,429,521 - 156,438,066 (+)NCBI
Rnor_5.01152,169,678 - 152,178,213 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039099925   ⟹   XP_038955853
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X157,208,235 - 157,216,780 (-)NCBI
mRatBN7.2X152,056,942 - 152,065,465 (-)NCBI
RefSeq Acc Id: XM_039099926   ⟹   XP_038955854
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X157,208,235 - 157,216,796 (-)NCBI
mRatBN7.2X152,056,942 - 152,065,518 (-)NCBI
RefSeq Acc Id: XM_039099927   ⟹   XP_038955855
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X157,208,235 - 157,216,769 (-)NCBI
mRatBN7.2X152,056,942 - 152,065,469 (-)NCBI
RefSeq Acc Id: XM_039099928   ⟹   XP_038955856
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X157,208,235 - 157,211,117 (-)NCBI
mRatBN7.2X152,056,942 - 152,059,829 (-)NCBI
RefSeq Acc Id: XM_039099929   ⟹   XP_038955857
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X157,208,235 - 157,211,556 (-)NCBI
mRatBN7.2X152,056,942 - 152,060,276 (-)NCBI
RefSeq Acc Id: NP_001014245   ⟸   NM_001014223
- Peptide Label: precursor
- UniProtKB: Q2QDE7 (UniProtKB/Swiss-Prot),   A6KRR9 (UniProtKB/TrEMBL),   Q6AYF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229664   ⟸   XM_006229602
- Peptide Label: isoform X1
- UniProtKB: A6KRS0 (UniProtKB/TrEMBL),   Q6AYF0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073264   ⟸   ENSRNOT00000077322
Ensembl Acc Id: ENSRNOP00000073157   ⟸   ENSRNOT00000083203
RefSeq Acc Id: XP_038955854   ⟸   XM_039099926
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A7H1 (UniProtKB/TrEMBL),   Q6AYF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955855   ⟸   XM_039099927
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038955853   ⟸   XM_039099925
- Peptide Label: isoform X2
- UniProtKB: Q6AYF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955857   ⟸   XM_039099929
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038955856   ⟸   XM_039099928
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000089112   ⟸   ENSRNOT00000119460
Protein Domains
Endonuclease/exonuclease/phosphatase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q2QDE7-F1-model_v2 AlphaFold Q2QDE7 1-312 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13702047
Promoter ID:EPDNEW_R12571
Type:initiation region
Name:Dnase1l1_1
Description:deoxyribonuclease 1-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X156,429,580 - 156,429,640EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359588 AgrOrtholog
BioCyc Gene G2FUF-633 BioCyc
Ensembl Genes ENSRNOG00000055641 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000083203 ENTREZGENE
  ENSRNOT00000083203.2 UniProtKB/Swiss-Prot
  ENSRNOT00000119460 ENTREZGENE
Gene3D-CATH 3.60.10.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7122158 IMAGE-MGC_LOAD
InterPro Deoxyribonuclease-1_AS UniProtKB/Swiss-Prot
  DNase_I UniProtKB/Swiss-Prot
  DNASE_I_2 UniProtKB/Swiss-Prot
  Endo/exonu/phosph_ase_sf UniProtKB/Swiss-Prot
  Endo/exonuclease/phosphatase UniProtKB/Swiss-Prot
KEGG Report rno:363522 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94028 IMAGE-MGC_LOAD
NCBI Gene 363522 ENTREZGENE
PANTHER DEOXYRIBONUCLEASE UniProtKB/Swiss-Prot
  DEOXYRIBONUCLEASE-1-LIKE 1 UniProtKB/Swiss-Prot
Pfam Exo_endo_phos UniProtKB/Swiss-Prot
PhenoGen Dnase1l1 PhenoGen
PIRSF DNase_I_euk UniProtKB/Swiss-Prot
PRINTS DNASEI UniProtKB/Swiss-Prot
PROSITE DNASE_I_1 UniProtKB/Swiss-Prot
  DNASE_I_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000055641 RatGTEx
SMART DNaseIc UniProtKB/Swiss-Prot
Superfamily-SCOP SSF56219 UniProtKB/Swiss-Prot
UniProt A0A8I6A7H1 ENTREZGENE, UniProtKB/TrEMBL
  A6KRR9 ENTREZGENE, UniProtKB/TrEMBL
  A6KRS0 ENTREZGENE, UniProtKB/TrEMBL
  DNSL1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q6AYF0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Dnase1l1  deoxyribonuclease 1-like 1  LOC363522  similar to RIKEN cDNA 2310005K03  Symbol and Name updated 1299863 APPROVED
2005-07-29 LOC363522  similar to RIKEN cDNA 2310005K03      Symbol and Name status set to provisional 70820 PROVISIONAL