Dnase1l1 (deoxyribonuclease 1-like 1) - Rat Genome Database

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Gene: Dnase1l1 (deoxyribonuclease 1-like 1) Rattus norvegicus
Analyze
Symbol: Dnase1l1
Name: deoxyribonuclease 1-like 1
RGD ID: 1359588
Description: Predicted to enable DNA binding activity and deoxyribonuclease I activity. Predicted to be involved in DNA catabolic process. Predicted to be located in endoplasmic reticulum. Predicted to be active in nucleus. Orthologous to human DNASE1L1 (deoxyribonuclease 1 like 1); INTERACTS WITH all-trans-retinoic acid; bisphenol A; ketoconazole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: deoxyribonuclease I-like 1; deoxyribonuclease-1-like 1; DNase I-like 1; DNase X; LOC363522; similar to RIKEN cDNA 2310005K03
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X157,208,230 - 157,216,812 (-)NCBIGRCr8
mRatBN7.2X152,056,942 - 152,065,518 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX152,056,942 - 152,065,518 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX154,198,071 - 154,206,552 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X157,761,304 - 157,769,785 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X155,433,103 - 155,441,584 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X156,429,521 - 156,438,066 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX156,429,585 - 156,438,066 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01152,169,678 - 152,178,213 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X160,327,966 - 160,336,447 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X160,404,391 - 160,412,828 (+)NCBI
Celera1135,831,332 - 135,839,813 (+)NCBICelera
Cytogenetic MapXq37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
endoplasmic reticulum  (IEA,ISO)
nucleus  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:16107205   PMID:23376485  


Genomics

Comparative Map Data
Dnase1l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X157,208,230 - 157,216,812 (-)NCBIGRCr8
mRatBN7.2X152,056,942 - 152,065,518 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX152,056,942 - 152,065,518 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX154,198,071 - 154,206,552 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X157,761,304 - 157,769,785 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X155,433,103 - 155,441,584 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X156,429,521 - 156,438,066 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX156,429,585 - 156,438,066 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01152,169,678 - 152,178,213 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X160,327,966 - 160,336,447 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X160,404,391 - 160,412,828 (+)NCBI
Celera1135,831,332 - 135,839,813 (+)NCBICelera
Cytogenetic MapXq37NCBI
DNASE1L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X154,401,236 - 154,412,101 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX154,401,236 - 154,412,112 (-)EnsemblGRCh38hg38GRCh38
GRCh37X153,629,577 - 153,640,438 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X153,282,773 - 153,293,621 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X153,150,425 - 153,158,422NCBI
CeleraX153,790,635 - 153,801,484 (-)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX142,206,968 - 142,217,816 (-)NCBIHuRef
CHM1_1X153,541,222 - 153,552,074 (-)NCBICHM1_1
T2T-CHM13v2.0X152,637,756 - 152,648,607 (-)NCBIT2T-CHM13v2.0
Dnase1l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X73,316,823 - 73,325,939 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX73,316,823 - 73,325,943 (-)EnsemblGRCm39 Ensembl
GRCm38X74,273,217 - 74,282,333 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX74,273,217 - 74,282,337 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X71,518,556 - 71,527,672 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X70,525,938 - 70,534,454 (-)NCBIMGSCv36mm8
CeleraX65,526,994 - 65,536,124 (-)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.94NCBI
Dnase1l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580907,582 - 914,243 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955580907,056 - 913,604 (-)NCBIChiLan1.0ChiLan1.0
DNASE1L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X154,376,064 - 154,385,167 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X154,379,690 - 154,388,048 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X143,842,920 - 143,851,795 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X153,712,050 - 153,725,868 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX153,712,054 - 153,725,868 (-)Ensemblpanpan1.1panPan2
DNASE1L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X122,101,992 - 122,109,240 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX122,101,992 - 122,109,165 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X125,243,686 - 125,250,933 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX125,243,302 - 125,250,882 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X121,012,760 - 121,020,007 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X123,527,626 - 123,534,873 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X123,289,507 - 123,296,773 (-)NCBIUU_Cfam_GSD_1.0
Dnase1l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X119,413,626 - 119,420,791 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368091,151,202 - 1,159,029 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368091,151,312 - 1,159,017 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNASE1L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,931,410 - 124,939,965 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X124,931,410 - 124,937,569 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DNASE1L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606566,628,194 - 66,636,944 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnase1l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624946864,657 - 870,396 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624946858,638 - 869,859 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dnase1l1
12 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:36
Interacting mature miRNAs:39
Transcripts:ENSRNOT00000056285
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat

Markers in Region
RH137735  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X152,059,445 - 152,059,635 (-)MAPPERmRatBN7.2
Rnor_6.0X156,435,373 - 156,435,562NCBIRnor6.0
Rnor_5.01152,175,520 - 152,175,709UniSTSRnor5.0
RGSC_v3.4X160,333,754 - 160,333,943UniSTSRGSC3.4
Celera1135,837,120 - 135,837,309UniSTS
Cytogenetic MapXq37UniSTS
RH139827  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X152,056,983 - 152,057,167 (-)MAPPERmRatBN7.2
Rnor_6.0X156,437,841 - 156,438,024NCBIRnor6.0
Rnor_5.01152,177,988 - 152,178,171UniSTSRnor5.0
RGSC_v3.4X160,336,222 - 160,336,405UniSTSRGSC3.4
Celera1135,839,588 - 135,839,771UniSTS
Cytogenetic MapXq37UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 41 25 19 25 8 11 54 35 34 11 8
Low 8 16 16 16 20 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000077322   ⟹   ENSRNOP00000073264
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX152,056,942 - 152,065,379 (-)Ensembl
Rnor_6.0 EnsemblX156,429,630 - 156,438,066 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000083203   ⟹   ENSRNOP00000073157
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX152,056,942 - 152,065,424 (-)Ensembl
Rnor_6.0 EnsemblX156,429,585 - 156,438,066 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119460   ⟹   ENSRNOP00000089112
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX152,056,954 - 152,065,518 (-)Ensembl
RefSeq Acc Id: NM_001014223   ⟹   NP_001014245
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X157,208,230 - 157,216,711 (-)NCBI
mRatBN7.2X152,056,942 - 152,065,424 (-)NCBI
Rnor_6.0X156,429,585 - 156,438,066 (+)NCBI
Rnor_5.01152,169,678 - 152,178,213 (+)NCBI
RGSC_v3.4X160,327,966 - 160,336,447 (+)RGD
Celera1135,831,332 - 135,839,813 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006229602   ⟹   XP_006229664
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X157,208,235 - 157,216,812 (-)NCBI
mRatBN7.2X152,056,942 - 152,065,518 (-)NCBI
Rnor_6.0X156,429,521 - 156,438,066 (+)NCBI
Rnor_5.01152,169,678 - 152,178,213 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039099925   ⟹   XP_038955853
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X157,208,235 - 157,216,780 (-)NCBI
mRatBN7.2X152,056,942 - 152,065,465 (-)NCBI
RefSeq Acc Id: XM_039099926   ⟹   XP_038955854
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X157,208,235 - 157,216,796 (-)NCBI
mRatBN7.2X152,056,942 - 152,065,518 (-)NCBI
RefSeq Acc Id: XM_039099927   ⟹   XP_038955855
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X157,208,235 - 157,216,769 (-)NCBI
mRatBN7.2X152,056,942 - 152,065,469 (-)NCBI
RefSeq Acc Id: XM_039099928   ⟹   XP_038955856
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X157,208,235 - 157,211,117 (-)NCBI
mRatBN7.2X152,056,942 - 152,059,829 (-)NCBI
RefSeq Acc Id: XM_039099929   ⟹   XP_038955857
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X157,208,235 - 157,211,556 (-)NCBI
mRatBN7.2X152,056,942 - 152,060,276 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001014245   ⟸   NM_001014223
- Peptide Label: precursor
- UniProtKB: Q2QDE7 (UniProtKB/Swiss-Prot),   A6KRR9 (UniProtKB/TrEMBL),   Q6AYF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229664   ⟸   XM_006229602
- Peptide Label: isoform X1
- UniProtKB: A6KRS0 (UniProtKB/TrEMBL),   Q6AYF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073264   ⟸   ENSRNOT00000077322
RefSeq Acc Id: ENSRNOP00000073157   ⟸   ENSRNOT00000083203
RefSeq Acc Id: XP_038955854   ⟸   XM_039099926
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A7H1 (UniProtKB/TrEMBL),   Q6AYF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955855   ⟸   XM_039099927
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038955853   ⟸   XM_039099925
- Peptide Label: isoform X2
- UniProtKB: Q6AYF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955857   ⟸   XM_039099929
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038955856   ⟸   XM_039099928
- Peptide Label: isoform X5
RefSeq Acc Id: ENSRNOP00000089112   ⟸   ENSRNOT00000119460
Protein Domains
Endonuclease/exonuclease/phosphatase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q2QDE7-F1-model_v2 AlphaFold Q2QDE7 1-312 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13702047
Promoter ID:EPDNEW_R12571
Type:initiation region
Name:Dnase1l1_1
Description:deoxyribonuclease 1-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X156,429,580 - 156,429,640EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359588 AgrOrtholog
BioCyc Gene G2FUF-633 BioCyc
Ensembl Genes ENSRNOG00000055641 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055025131 UniProtKB/Swiss-Prot
  ENSRNOG00060006744 UniProtKB/Swiss-Prot
  ENSRNOG00065015002 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000077322.2 UniProtKB/TrEMBL
  ENSRNOT00000083203 ENTREZGENE
  ENSRNOT00000083203.2 UniProtKB/Swiss-Prot
  ENSRNOT00000119460.1 UniProtKB/TrEMBL
  ENSRNOT00055043358 UniProtKB/Swiss-Prot
  ENSRNOT00060011059 UniProtKB/Swiss-Prot
  ENSRNOT00065024841 UniProtKB/Swiss-Prot
Gene3D-CATH 3.60.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7122158 IMAGE-MGC_LOAD
InterPro Deoxyribonuclease-1_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNase_I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNASE_I_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Endo/exonu/phosph_ase_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Endo/exonuclease/phosphatase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:363522 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:94028 IMAGE-MGC_LOAD
NCBI Gene 363522 ENTREZGENE
PANTHER DEOXYRIBONUCLEASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DEOXYRIBONUCLEASE-1-LIKE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Exo_endo_phos UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dnase1l1 PhenoGen
PIRSF DNase_I_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS DNASEI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE DNASE_I_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNASE_I_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000055641 RatGTEx
  ENSRNOG00055025131 RatGTEx
  ENSRNOG00060006744 RatGTEx
  ENSRNOG00065015002 RatGTEx
SMART DNaseIc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56219 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A7H1 ENTREZGENE, UniProtKB/TrEMBL
  A6KRR9 ENTREZGENE, UniProtKB/TrEMBL
  A6KRS0 ENTREZGENE, UniProtKB/TrEMBL
  DNSL1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q6AYF0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Dnase1l1  deoxyribonuclease 1-like 1  LOC363522  similar to RIKEN cDNA 2310005K03  Symbol and Name updated 1299863 APPROVED
2005-07-29 LOC363522  similar to RIKEN cDNA 2310005K03      Symbol and Name status set to provisional 70820 PROVISIONAL