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Gene: Cyyr1 (cysteine and tyrosine rich 1) Rattus norvegicus

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Symbol:

Cyyr1

Name:

cysteine and tyrosine rich 1

RGD ID:

1359578

Description:

Predicted to be located in membrane. Orthologous to human CYYR1 (cysteine and tyrosine rich 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

cysteine and tyrosine-rich protein 1; cysteine/tyrosine-rich 1; LOC304138; similar to cysteine and tyrosine-rich protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CYYR1 (cysteine and tyrosine rich 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, PhylomeDB, Treefam
Mus musculus (house mouse):	Cyyr1 (cysteine and tyrosine-rich protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cyyr1 (cysteine and tyrosine rich 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CYYR1 (cysteine and tyrosine rich 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CYYR1 (cysteine and tyrosine rich 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cyyr1 (cysteine and tyrosine rich 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CYYR1 (cysteine and tyrosine rich 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CYYR1 (cysteine and tyrosine rich 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cyyr1 (cysteine and tyrosine rich 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CYYR1 (cysteine and tyrosine rich 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cyyr1 (cysteine and tyrosine-rich protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cyyr1 (cysteine/tyrosine-rich 1)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cyyr1 (cysteine/tyrosine-rich 1)	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cyyr1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cyyr1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Allele / Splice:

Cyyr1^{Tn(sb-T2/Bart3)2.328Mcwi}

Genetic Models:

F344-Cyyr1^{Tn(sb-T2/Bart3)2.328Mcwi}

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	38,044,003 - 38,150,391 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	38,001,699 - 38,164,473 (-)	Ensembl				GRCr8
mRatBN7.2	11	24,557,620 - 24,664,007 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	24,515,316 - 24,663,961 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	33,269,208 - 33,375,702 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	25,969,466 - 26,075,964 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	25,158,346 - 25,264,832 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	24,967,936 - 25,078,740 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	24,967,937 - 25,078,740 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	28,591,553 - 28,702,298 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	25,036,792 - 25,157,304 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	24,380,046 - 24,485,398 (-)	NCBI		Celera
RGSC_v3.1	11	25,036,792 - 25,053,896 (-)	NCBI
Cytogenetic Map	11	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

alpha-Zearalanol (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

Butylbenzyl phthalate (EXP)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

cobalt dichloride (ISO)

copper atom (EXP)

copper(0) (EXP)

crocidolite asbestos (ISO)

Cuprizon (EXP)

dibenz[a,h]anthracene (ISO)

dibutyl phthalate (EXP)

dorsomorphin (ISO)

ethanol (ISO)

fipronil (EXP)

furan (EXP)

methamphetamine (EXP)

methylmercury chloride (ISO)

orphenadrine (EXP)

ozone (ISO)

paracetamol (ISO)

perfluorooctanoic acid (EXP)

permethrin (ISO)

resveratrol (EXP)

SB 431542 (ISO)

SCH 23390 (EXP)

silicon dioxide (ISO)

sodium arsenate (ISO)

Soman (EXP)

streptozocin (EXP)

sunitinib (ISO)

testosterone (ISO)

thioacetamide (EXP)

toluene (EXP)

valproic acid (EXP,ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

membrane (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Comprehensive gene review and curation	RGD comprehensive gene curation
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data

Cyyr1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	38,044,003 - 38,150,391 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	38,001,699 - 38,164,473 (-)	Ensembl				GRCr8
mRatBN7.2	11	24,557,620 - 24,664,007 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	24,515,316 - 24,663,961 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	33,269,208 - 33,375,702 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	25,969,466 - 26,075,964 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	25,158,346 - 25,264,832 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	24,967,936 - 25,078,740 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	24,967,937 - 25,078,740 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	28,591,553 - 28,702,298 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	25,036,792 - 25,157,304 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	24,380,046 - 24,485,398 (-)	NCBI		Celera
RGSC_v3.1	11	25,036,792 - 25,053,896 (-)	NCBI
Cytogenetic Map	11	q11	NCBI

CYYR1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	26,466,216 - 26,573,286 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	26,466,209 - 26,573,286 (-)	Ensembl			hg38	GRCh38
GRCh37	21	27,838,535 - 27,945,605 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	26,760,399 - 26,867,452 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	21	26,760,399 - 26,867,452	NCBI
Celera	21	13,021,968 - 13,129,017 (-)	NCBI		Celera
Cytogenetic Map	21	q21.3	NCBI
HuRef	21	13,243,091 - 13,350,122 (-)	NCBI		HuRef
CHM1_1	21	27,399,962 - 27,506,990 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	21	24,824,341 - 24,931,429 (-)	NCBI		T2T-CHM13v2.0

Cyyr1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	85,247,245 - 85,347,793 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	85,218,421 - 85,350,285 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	85,452,858 - 85,550,905 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	85,421,533 - 85,553,397 (-)	Ensembl			mm10	GRCm38
MGSCv37	16	85,456,488 - 85,550,618 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	85,345,439 - 85,439,569 (-)	NCBI		MGSCv36	mm8
Celera	16	85,660,754 - 85,756,310 (-)	NCBI		Celera
Cytogenetic Map	16	C3.3	NCBI
cM Map	16	47.45	NCBI

Cyyr1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	26,212,801 - 26,313,249 (-)	Ensembl
ChiLan1.0	NW_004955407	26,208,335 - 26,313,566 (-)	NCBI	ChiLan1.0	ChiLan1.0

CYYR1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	22,655,138 - 22,762,149 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	17,515,642 - 17,622,682 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	12,905,184 - 13,012,200 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	26,291,718 - 26,398,521 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	26,291,718 - 26,398,521 (-)	Ensembl			panPan2	panpan1.1

CYYR1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	21,855,863 - 21,960,188 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	21,860,027 - 21,960,103 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	21,849,953 - 21,954,488 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	21,908,577 - 22,014,043 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	21,912,753 - 22,014,757 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	21,926,540 - 22,030,998 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	21,931,210 - 22,035,909 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	22,406,388 - 22,511,125 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cyyr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	22,387,835 - 22,492,758 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936640	1,189,040 - 1,289,650 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936640	1,188,692 - 1,293,716 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CYYR1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	189,957,611 - 190,066,539 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	189,957,606 - 190,066,660 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	199,815,664 - 199,831,327 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CYYR1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	65,645,101 - 65,749,566 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666071	8,306,863 - 8,412,436 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cyyr1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	14,436,162 - 14,529,351 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624745	14,431,709 - 14,529,408 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Cyyr1
744 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	83
Count of miRNA genes:	75
Interacting mature miRNAs:	78
Transcripts:	ENSRNOT00000002109
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300147	Bp187	Blood pressure QTL 187	3.67		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	11	22524746	82951192	Rat
1598841	Memor7	Memory QTL 7			exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	11	33306008	78306008	Rat
1598842	Glom10	Glomerulus QTL 10	3.4		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	3818154	48818154	Rat
1598811	Bp291	Blood pressure QTL 291	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	33306008	78306008	Rat
634339	Niddm50	Non-insulin dependent diabetes mellitus QTL 50	3.32		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	11	10806125	55806125	Rat
634341	Bw121	Body weight QTL 121	3.56		abdominal fat pad mass (VT:1000711)	abdominal fat pad weight (CMO:0000088)	11	35323199	55805892	Rat
8694376	Bw156	Body weight QTL 156	2.25	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	36749459	81749459	Rat
10755497	Bp388	Blood pressure QTL 388	2.76		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	32943067	89836615	Rat
724517	Uae18	Urinary albumin excretion QTL 18	3.7		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	29958996	57754989	Rat
2290451	Scl58	Serum cholesterol level QTL 58	3.48		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	11	26318031	55806125	Rat
1300130	Rf20	Renal function QTL 20	4.44		kidney glomerulus integrity trait (VT:0010546)	kidney glomerulus diameter (CMO:0001166)	11	31915469	76915469	Rat
10058952	Gmadr6	Adrenal mass QTL 6	2.29	0.0072	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	36428416	81428416	Rat
1600394	Edcs1	Endometrial carcinoma susceptibility QTL1	2.9	0.04	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	11	12823152	57823152	Rat
1558659	Tescar1	Testicular tumor resistance QTL 1	3.9		testis integrity trait (VT:0010572)	percentage of study population developing testis tumors during a period of time (CMO:0001261)	11	34618760	79618760	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	20193549	96351019	Rat
9589032	Epfw10	Epididymal fat weight QTL 10	9.29	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	11	36749459	81749459	Rat
9590313	Scort20	Serum corticosterone level QTL 20	6.51	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	11	36749459	81749459	Rat
8694424	Bw162	Body weight QTL 162	3.8	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	36749459	81749459	Rat
631510	Spl2	Serum phospholipid level QTL 2	4.1		blood phospholipid amount (VT:0006084)	serum phospholipid level (CMO:0001171)	11	27556685	72556685	Rat

Markers in Region

AU046668

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	11	38,107,855 - 38,108,115 (+)	Marker Load Pipeline
mRatBN7.2	11	24,621,474 - 24,621,734 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	25,028,549 - 25,028,808	NCBI	Rnor6.0
Rnor_5.0	11	28,652,822 - 28,653,081	UniSTS	Rnor5.0
RGSC_v3.4	11	25,105,875 - 25,106,134	UniSTS	RGSC3.4
Celera	11	24,443,599 - 24,443,858	UniSTS
Cytogenetic Map	11	q11	UniSTS

RH130150

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	24,557,666 - 24,557,886 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	24,967,983 - 24,968,202	NCBI	Rnor6.0
Rnor_5.0	11	28,591,600 - 28,591,819	UniSTS	Rnor5.0
RGSC_v3.4	11	25,036,839 - 25,037,058	UniSTS	RGSC3.4
Celera	11	24,380,093 - 24,380,312	UniSTS
RH 3.4 Map	11	101.5	UniSTS
Cytogenetic Map	11	q11	UniSTS

RH138693

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	24,646,276 - 24,646,468 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	25,061,185 - 25,061,376	NCBI	Rnor6.0
Rnor_5.0	11	28,684,743 - 28,684,934	UniSTS	Rnor5.0
RGSC_v3.4	11	25,140,123 - 25,140,314	UniSTS	RGSC3.4
Celera	11	24,467,839 - 24,468,030	UniSTS
RH 3.4 Map	11	104.5	UniSTS
Cytogenetic Map	11	q11	UniSTS

Genetic Models

This gene Cyyr1 is modified in the following models/strains:

F344-Cyyr1^{Tn(sb-T2/Bart3)2.328Mcwi}

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	158	91	90	59	38	59	6	302	138	11	134	81	92	31	11	11

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC087052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000002109 ⟹ ENSRNOP00000002109

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	38,044,004 - 38,164,473 (-)	Ensembl
mRatBN7.2 Ensembl	11	24,557,621 - 24,663,832 (-)	Ensembl
Rnor_6.0 Ensembl	11	24,967,937 - 25,078,740 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101180 ⟹ ENSRNOP00000091866

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	38,044,004 - 38,150,444 (-)	Ensembl
mRatBN7.2 Ensembl	11	24,557,621 - 24,663,961 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120065 ⟹ ENSRNOP00000082484

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	38,001,699 - 38,150,213 (-)	Ensembl
mRatBN7.2 Ensembl	11	24,515,316 - 24,663,832 (-)	Ensembl

RefSeq Acc Id:

NM_001013980 ⟹ NP_001014002

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	38,044,003 - 38,150,213 (-)	NCBI
mRatBN7.2	11	24,557,620 - 24,663,832 (-)	NCBI
Rnor_6.0	11	24,967,936 - 25,078,740 (-)	NCBI
Rnor_5.0	11	28,591,553 - 28,702,298 (-)	NCBI
RGSC_v3.4	11	25,036,792 - 25,157,304 (-)	RGD
Celera	11	24,380,046 - 24,485,398 (-)	RGD

Sequence:

show sequence

CTTTTGCTTGCCAGAGCACAGCACCTTTGGGCGGGACATAAAGCCCCTGCCGCAGCTCACCCAG
GCAAGGAACACCGGAGCTCAGCTGCCCCGCAGCCGGCTGGATTCGCCAGGGCTGGGGTCATGGC
CAGGGCCGCTCTGGACCCTGCTCTCGGGAGCACATCCCTGTTCTCCTGACCGCCCTGTATCCTC
CGCATTGCTGCTGGAGTTCCCGGCTGTCCCTTCACTTCAATCTCGGCCAGGTCTACCGGTCTGT
CTTACAGAGCAGCTTGGGGCCACCGGCTTGGATGGATGCGCTGAGGCTGCCCCGGCGTCTAGGG
GTCTTGCTTTGGAAGGTGGTCCTGCTCTTTGTTTATGCAGAGGATTGCCGTGCTCAGTGTGGCA
AAGACTGCCGAGCCTACTGCTGCAATGGAAGCACACCGCACTGCTGCTCCTACTACGCCTACAT
TGGGAGCATCCTCTCGGGCACTGCGATTGCTGGCATCGTGTTTGGAATCGTGTTCATCATGGGG
GTCATTGCAGGAATTGCCATATGCATCTGCATGTGCATGAAAAACAACCGGGGAACCCGCGTGG
GAGTCATCAGAGCAGCACACATCAATGCCATCTCCTATCCCATGGCACCGCCCCCCTATACTTA
TGACCATGAGACGGAATATTGCACAGACCTGCCACCACCATACTCTCCAGCCCCTCAAGCTTCA
GCCCAGCGCTCTCCACCCCCTCCGTATCCTGGAAATTCAAGGAAATATTCCTCCTCGCAGAACA
GAATATGTAACAATTAGCAATTACCCAGAACAAAATGCCTCAATTTAGAAACGTGCAAAAAATA
AAATGATTGTCTACTGGCTAGGGTCAGATAACATCTCAGGCAGACTATTCATGTGGAGCAGGCT
CTTTCCCTGCTCAGAGCTAGGTAGAGAATGATGTGTGGTTCTCTAAAGTCACAGATTACGTGAT
CTACAGATCCACCCAGGCACAGTCAGATTAAAGCAATGCACTTGGCAGACCACGTGATAATCAC
GCTGCTTTAGGACGAGCTGAAGGCAACTTCAGCATTGAACCTGGAATCAAGACAAACAGAGGAC
AGTCTTATCTACATCAGGAAAGAGCTGCATTCCACATAGCTTTAGGAGAACTAGAACAGTTCAT
TATTACATTTATCCACAAATATGTATTAAGTGCCTTAGAGCCCACTCAGTGCCTGGCCACGTTA
GGGGCTCTGGATAGAAGTAACCAGTGGGAACGTTGGTTCTGGCACAGGCATACCTCATCTTGTT
GCACTTTGACCTTTTGCACTTCACAGTGGTGTTGCATGTTTTTTTACAGATTGAAGGTTTGTGA
TAACCTTGCACCAAGCAGTGTCATTTTCCCAACAGTAGAAGCATACTTCCTATCCTTGTATTAC
ATGTTGGTCATGTACGCCAACATTCCAAATGTTTTCATAGCCACGATTATTATGTCTGTTATGG
TGATCTGTGTTTAGTGTTGGTTGGTGTTGTTATAGTAGATATTTGTTTGGAGATGTCATGAATT
CTGCCCCTATAAAACAGTGAGATTAGTGTGATAAATAGTGAGATAAATAGTGTGTGTGTGTGTG
TATGTATCATATTTGCTCCACTGAAAACCTTCACCCCTTCCTCCTCTCTCTCTCTCCTCCTATT
CCGAGAACAGTCTGAAATTAGGCCAATTAACAAGCCAACAATGACTTCTAAGTGTTCAAGCTAA
AAGAATAATATGGTTCTTACTTTAACCCAAAGATGGAAATAATTCATCTTCATGACAAAAGCAT
GTTCAAATCTGAGATAGGCTGGAAGGCCAGCATCTTACGCTAGCTTGTAAGTTAAGCCATAAAA
ACACAGATGAGGCTTTCTTAAAGGAAACTAAAAATGTCTCTCTCCAAACACACAAATGATAGAA
AAGAAAGAGAACACCAGCCCCACTGCTTATAAGAATAACTCATTAGTGGTGTATGCAGCAGATC
AAAACAACCACATTCCCTCAAGTCATAAAGCTTGATCCAGAGCTGGGACCTAACTCTTCATTCT
GCAATGGCTGGCAGAGGCGAACAAGAAATGTAAGCATAGCTTGCATGCTGTAAGAGAAAGATTG
AGAGGAGCAGAGATCAGGTCCTGAAGTTAAGAGAAGGAGCTACCCTACCCCCGTATTCAAAGGA
GAAGGTGAAGCTTCAGGCACTGCAATGGAGGCTGACGCCTGTTCTCTCAAAGACCTAGTTAGGA
TCACACAGAAGATGGCTGCTTAATGGAAATGACAGTCTCTACTGTTGGAAGACGTGCTTGCCTT
CTAGAACTTCCACAGCCAGAACAAAGAAGCCATCCTAACTCCAAACCTCAAAAGACAGTCTGGC
CTTCTTGCTAGTGTCTATAACATAACTGCTGACTTTCACATGAAGCCAGTGTTCAATGTTCATT
TTCTAGCCAAAAATCCTAGCCCTCTTAAGAATAGCCATAGTTCGCTCTGCCTGTAGTCTATACA
TAGAACAACCAGGTCTTTTTTTGATGTTGTTTAATGAATGTTTTAAACCAAGTGTTGAGACTGC
TCAGGGAAAAACAAGTTGTTGCTTTTTTTCAAAACCTTACTGCTTATTGACAAAGCTCATCCAA
GTGCTCCAATGGAAATGTACAAAGAAACAAAGATCTGTTCATATGCAGCAACGATTCCAGTCCT
ACTCTGTGTCCCATAGACTATGGTTAACTTCAACTTCTAAGCCTTGGTATTTAATAACTGCCTT
TTATAAGGTCATAACTGACACAAATTGGAACCTCTGGGGGCTTGGCAAAGTCCTGGAAAGAATC
TGTGACTGTAGACCCATGATTCACAAGAAGAGATCGAGAGGTCAGTATTAATGCACATTTGGAG
GAAGTAGATTCCGGCCCTCATACATAATGTTGCCTTTGCTAAGGCTTTGGAGGAGAAAGTACCT
ACAGATATGGTAAACTCACAAAGGAACTAACCTTGGAGATGGAAATTGAAGGTGCAACTCAGAT
ACTATGTCTCAGGCTATCACTGCAAGAGGAACAATTGCTTCTTACGGTGAGCAATGGAGGTTTT
GGTTCTTCTGGTGAAACACACTGCTGGGGAAAGGTGCTGTGGGCAGAGATGAGGTCATAGCAGA
GGGTTTAGAGTATTTGTAAGTGACTTGAAAAGCCTGCAGTGGGATTGGAGAAAATTACAATTTT
GAAGGAAGAAACACCGTGCTTTAAAAGCTGCCAAGCAGCATCACATGCTACAGAGAACCCGTTT
GTGAAGAGATGTTTCAACCCATGTAGCAGATTTCACTGTTATATTATTTGAAGGAACTAACCGG
ATTAAGCAAGCACCAGCCTAATCATCAGCAACTCTCACCCCACCACCACCAAAAAGATTTGGAC
CTGCCGAAAGCTTGGCTGCTAGTTGCCATTCTTTAACAATGAAATATTTTAATGAGGGTGTAGA
CACTGCTTTGAAGACACTTAACAAACTATAATACAGTATAAACATAACTTTAATGTGTACCAGA
AAACCAAAAAGTATTCGTGTGATTCTCTAGTGAAATTTGCTTTGCAAGAAAGACAAGCGGCTTC
ACAGGTGATGTTGAAGTCTTATTAGTATGAGTATATGAAACCCATGCCCTCTCTAAAGTATGTG
TGTAAAACAAAGCAAATTAAGCAAACAACAACAAAAAACCAGTCGCAGCCTTACTGTTGACTAG
ATAGCTTTGTGAAGCTCTTCCATCGAGATCCCAAACAAAATGCAGCTGTATAGTAAAGAAATGT
TCTAGAAAGGTGTCTAAAATGAATCGATCCTTTTAGCCTCAAACTGTCTGCTTATGTCTTAGGT
GGGTGTGACTACCTGTGTCTGCAGCAGTGACAGCAGTAACTCAATCTTACCCATTGACTCTGAC
TATTTAAACAAGATCAAAGGTACCCACCAGGTTCTGGGCGCTAAGATCTCCACAGTCCTTACTA
ACTCTTCCTAAAAACCCATATCGCTTTAGTCACAGGTATATGAAGGTTGCTCCAATTGTGGAAT
AAGAGGTGAGAAACCAAATAGTTCCAGGGTTTTATATCAGTAATAAAATGTGTAATTTGACCAT
AGACAAAAGACTTTTTTTAAAGGGGGAAATGAATGCTCAAGCCATTGCTTCCATTTTATAAAAA
CTAATCTTTTAGAAAAGTTAAATAATTAATGGGAAAGGCAAGAGGACACTGTGTTGCCTTTTGC
CCGAGTACTAGGTTTTGTGACGTGCTTGCCTTTAAATATGAAAGCATTCAATAAAAAATTCCAA
TGCGTCATGTTCTACTCCAAGTGACCCTAACATTCATTTTTTCCACTTGGCTCTTTTTGTGTAC
TTTAAAATTGTTTGATGATCACTAGGGATAGAAGGTCAGACCTTTATGTCACTTTAAAAGAAAA
CCTAAAACACTAACCAAACTTAAACAATCTGGTATAATGATTATAATTCAATGATATTCCAAAA
TGGCACCAAGATACTTGATAAATAACCAAAACAAATATCTGACAATATAGGCTATGGGATCTGA
GCTTATAGTTGAGAAAGTTAATATGAATAAATAGTGCCTTTTACTGTATCAAATATCTGCAGTA
GAAATATGTGGGTCTGACTGAACATGGTCTACAGAAGTTATTGAGGCTAGGTTTGTTTTGAGTG
ATTTGCTTGGCTTAGGCAAGAATAATCTTAGCTTCGAAGATGTGAAAAGCCTTCAGGGGTCCTG
TCTGTTCTAGTAAGAGGCTTCCTGCCTAGCATGAAGTGTCGGCATAGTGTTAGCAGTACATGGG
CTTTGATTTATTTTTCTTCGGCAAATGTGATTAGTTTATACCACTCTACAGCAATAATCCTCAA
TGCCAAAGTCACAGTGATCTGAGAAAGTTGTTTGCAAATCCACTACACATTTCTAAAGAAAAAT
AAAGAGGCAAGTCTGCCAAAATTGAATGCTCATTTTGACACGAATGTACATCTACCACATGCCT
CTGACATTCTATAAACATTGTCTGCATGGGAACTGTCCACACTATCTCTCTTTGAGTTGGTTAT
GACTCGCCTGAAGGCATAGCACAAACCTATATATTTACAATGAAGAATTTTACTGGTTTTTACT
AGTGTCATACTATCATACATGAATATATCATGGATTTCTAAAGTTCACTGATTATTTCCAGAAG
TAATGTATATCAGAGGAAAACAATATTTGATGTAAATTTTTGATTATGGTTGTTTAAGAACTAA
CCTTTGCTATGGCTAAATTATTTACAAAGAGCAATAAAATGAAAGAACTTGCTATAATGAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039088443 ⟹ XP_038944371

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	38,067,627 - 38,150,391 (-)	NCBI
mRatBN7.2	11	24,581,234 - 24,664,007 (-)	NCBI

RefSeq Acc Id:

XM_063270601 ⟹ XP_063126671

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	38,067,118 - 38,150,388 (-)	NCBI

RefSeq Acc Id:

XR_010055961

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	38,067,118 - 38,150,391 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001014002	(Get FASTA)	NCBI Sequence Viewer
	XP_038944371	(Get FASTA)	NCBI Sequence Viewer
	XP_063126671	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87052	(Get FASTA)	NCBI Sequence Viewer
	EDM10629	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000002109.5
GenBank Protein	Q5PQS5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001014002 ⟸ NM_001013980
- Peptide Label:	precursor
- UniProtKB:	Q5PQS5 (UniProtKB/Swiss-Prot), A6JL64 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDALRLPRRLGVLLWKVVLLFVYAEDCRAQCGKDCRAYCCNGSTPHCCSYYAYIGSILSGTAIA GIVFGIVFIMGVIAGIAICICMCMKNNRGTRVGVIRAAHINAISYPMAPPPYTYDHETEYCTDL PPPYSPAPQASAQRSPPPPYPGNSRKYSSSQNRICNN hide sequence

Ensembl Acc Id:

ENSRNOP00000002109 ⟸ ENSRNOT00000002109

RefSeq Acc Id:	XP_038944371 ⟸ XM_039088443
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000082484 ⟸ ENSRNOT00000120065

Ensembl Acc Id:

ENSRNOP00000091866 ⟸ ENSRNOT00000101180

RefSeq Acc Id:	XP_063126671 ⟸ XM_063270601
- Peptide Label:	isoform X2

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5PQS5-F1-model_v2	AlphaFold	Q5PQS5	1-165	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698016

Promoter ID:

EPDNEW_R8541

Type:

multiple initiation site

Name:

Cyyr1_1

Description:

cysteine and tyrosine rich 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	25,078,751 - 25,078,811	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359578	AgrOrtholog
BioCyc Gene	G2FUF-22079	BioCyc
Ensembl Genes	ENSRNOG00000001544	Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000002109.8	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7122930	IMAGE-MGC_LOAD
InterPro	CYYR1	UniProtKB/Swiss-Prot
KEGG Report	rno:304138	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94044	IMAGE-MGC_LOAD
NCBI Gene	304138	ENTREZGENE
PANTHER	CYSTEINE AND TYROSINE-RICH PROTEIN 1	UniProtKB/Swiss-Prot
	PTHR38490	UniProtKB/Swiss-Prot
Pfam	CYYR1	UniProtKB/Swiss-Prot
PhenoGen	Cyyr1	PhenoGen
RatGTEx	ENSRNOG00000001544	RatGTEx
UniProt	A0A8I5ZXB2_RAT	UniProtKB/TrEMBL
	A0A8I6AGG6_RAT	UniProtKB/TrEMBL
	A6JL64	ENTREZGENE, UniProtKB/TrEMBL
	CYYR1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-26	Cyyr1	cysteine/tyrosine-rich 1	Cyyr1	cysteine and tyrosine-rich protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-04	Cyyr1	cysteine and tyrosine-rich protein 1	LOC304138	similar to cysteine and tyrosine-rich protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-29	LOC304138	similar to cysteine and tyrosine-rich protein 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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