Vom1r107 (vomeronasal 1 receptor 107) - Rat Genome Database

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Gene: Vom1r107 (vomeronasal 1 receptor 107) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Vom1r107
Name: vomeronasal 1 receptor 107
RGD ID: 1359561
Description: Predicted to enable pheromone binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway; response to pheromone; and sensory perception of chemical stimulus. Predicted to be located in membrane. Predicted to be active in plasma membrane; INTERACTS WITH cadmium dichloride; rotenone.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: V1rg4; vomernasal 1 receptor Vom1r107; vomeronasal 1 receptor, 107; vomeronasal 1 receptor, G4; vomeronasal type-1 receptor 4; vomeronasal V1r-type receptor V1rg4
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8714,672,866 - 14,673,780 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl714,672,866 - 14,673,780 (+)EnsemblGRCr8
mRatBN7.2713,970,357 - 13,971,271 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl713,970,357 - 13,971,271 (+)EnsemblmRatBN7.2
Rnor_6.0718,068,060 - 18,069,043 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl718,068,060 - 18,069,043 (+)Ensemblrn6Rnor6.0
Rnor_5.0718,240,441 - 18,241,424 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4715,667,161 - 15,668,144 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera712,880,801 - 12,881,784 (+)NCBICelera
RGSC_v3.1715,667,160 - 15,668,144 (+)NCBI
Cytogenetic Map7q11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19952141  


Genomics

Variants

.
Variants in Vom1r107
2 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:11
Count of miRNA genes:10
Interacting mature miRNAs:11
Transcripts:ENSRNOT00000065474
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)7123748937Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)71049882055498820Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat


Expression

RNA-SEQ Expression

endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
renal system
reproductive system
respiratory system
2 2 4 5 4 1 12 2

Sequence


Ensembl Acc Id: ENSRNOT00000065474   ⟹   ENSRNOP00000061039
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl714,672,866 - 14,673,780 (+)Ensembl
mRatBN7.2 Ensembl713,970,357 - 13,971,271 (+)Ensembl
Rnor_6.0 Ensembl718,068,060 - 18,069,043 (+)Ensembl
RefSeq Acc Id: NM_001408829   ⟹   NP_001395758
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8714,672,866 - 14,673,780 (+)NCBI
mRatBN7.2713,970,357 - 13,971,271 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001395758 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000061039
  ENSRNOP00000061039.2
Ensembl Acc Id: ENSRNOP00000061039   ⟸   ENSRNOT00000065474
RefSeq Acc Id: NP_001395758   ⟸   NM_001408829
- UniProtKB: Q5J3L0 (UniProtKB/TrEMBL)
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5J3L0-F1-model_v2 AlphaFold Q5J3L0 1-327 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359561 AgrOrtholog
BioCyc Gene G2FUF-34741 BioCyc
Ensembl Genes ENSRNOG00000042090 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065474 ENTREZGENE
  ENSRNOT00000065474.3 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Vmron_rcpt_1 UniProtKB/TrEMBL
NCBI Gene 494260 ENTREZGENE
PANTHER PTHR24062 UniProtKB/TrEMBL
Pfam V1R UniProtKB/TrEMBL
PhenoGen Vom1r107 PhenoGen
PRINTS VOMERONASL1R UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000042090 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt Q5J3L0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-06-08 Vom1r107  vomeronasal 1 receptor, 107  V1rg4  vomeronasal 1 receptor, G4  Symbol and Name updated 2325755 APPROVED
2008-07-23 V1rg4  vomeronasal 1 receptor, G4    vomeronasal 1 receptor, g4  Name updated 1299863 APPROVED
2005-07-29 V1rg4  vomeronasal 1 receptor, g4      Symbol and Name status set to provisional 70820 PROVISIONAL