Lrrfip1 (LRR binding FLII interacting protein 1) - Rat Genome Database

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Gene: Lrrfip1 (LRR binding FLII interacting protein 1) Rattus norvegicus
Analyze
Symbol: Lrrfip1
Name: LRR binding FLII interacting protein 1
RGD ID: 1359548
Description: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein homodimerization activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in cytosol and plasma membrane. Orthologous to human LRRFIP1 (LRR binding FLII interacting protein 1); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: leucine rich repeat (in FLII) interacting protein 1; leucine-rich repeat flightless-interacting protein 1; LOC367314; LRR FLII-interacting protein 1; similar to FLI-LRR associated protein-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8999,039,590 - 99,167,805 (+)NCBIGRCr8
mRatBN7.2991,592,032 - 91,720,250 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl991,643,197 - 91,720,250 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9100,070,071 - 100,136,618 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09105,205,839 - 105,272,386 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09103,570,901 - 103,637,616 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0998,139,484 - 98,268,148 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl998,190,829 - 98,257,735 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0997,820,647 - 97,950,350 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4990,278,891 - 90,346,980 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1990,483,659 - 90,551,748 (+)NCBI
Celera989,186,375 - 89,252,422 (+)NCBICelera
Cytogenetic Map9q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
(S)-nicotine  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
cadmium dichloride  (EXP)
caffeine  (ISO)
calcium dichloride  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
cocaine  (EXP)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
DDT  (EXP)
decabromodiphenyl ether  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
inulin  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-nitrosodimethylamine  (EXP)
nicotine  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
p-toluidine  (EXP)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
propiconazole  (EXP)
quercetin  (ISO)
resveratrol  (ISO)
rimonabant  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (EXP)
Soman  (EXP)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichostatin A  (ISO)
tungsten  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (ISO)
nucleus  (IEA)
plasma membrane  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:10364563   PMID:14522076   PMID:15489334   PMID:19265123   PMID:23099021   PMID:23880186   PMID:24637094   PMID:25468996   PMID:25532521   PMID:28322931   PMID:35352799  


Genomics

Comparative Map Data
Lrrfip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8999,039,590 - 99,167,805 (+)NCBIGRCr8
mRatBN7.2991,592,032 - 91,720,250 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl991,643,197 - 91,720,250 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9100,070,071 - 100,136,618 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09105,205,839 - 105,272,386 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09103,570,901 - 103,637,616 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0998,139,484 - 98,268,148 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl998,190,829 - 98,257,735 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0997,820,647 - 97,950,350 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4990,278,891 - 90,346,980 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1990,483,659 - 90,551,748 (+)NCBI
Celera989,186,375 - 89,252,422 (+)NCBICelera
Cytogenetic Map9q36NCBI
LRRFIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382237,627,587 - 237,781,643 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2237,627,587 - 237,813,682 (+)EnsemblGRCh38hg38GRCh38
GRCh372238,536,230 - 238,690,286 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362238,265,668 - 238,338,645 (+)NCBINCBI36Build 36hg18NCBI36
Build 342238,382,928 - 238,455,906NCBI
Celera2232,249,255 - 232,403,327 (+)NCBICelera
Cytogenetic Map2q37.3NCBI
HuRef2230,392,463 - 230,481,948 (+)NCBIHuRef
CHM1_12238,541,235 - 238,696,081 (+)NCBICHM1_1
T2T-CHM13v2.02238,117,567 - 238,271,644 (+)NCBIT2T-CHM13v2.0
Lrrfip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39190,924,652 - 91,056,666 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl190,926,459 - 91,056,666 (+)EnsemblGRCm39 Ensembl
GRCm38190,996,930 - 91,128,944 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl190,998,737 - 91,128,944 (+)EnsemblGRCm38mm10GRCm38
MGSCv37192,895,304 - 93,025,521 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36192,883,913 - 92,959,324 (+)NCBIMGSCv36mm8
Celera193,937,297 - 94,071,670 (+)NCBICelera
Cytogenetic Map1DNCBI
cM Map146.03NCBI
Lrrfip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555422,632,933 - 2,686,865 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555422,632,933 - 2,737,922 (-)NCBIChiLan1.0ChiLan1.0
LRRFIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213140,256,226 - 140,413,202 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B140,271,193 - 140,428,169 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B124,856,660 - 125,013,602 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B243,775,371 - 243,863,899 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B243,775,371 - 243,863,116 (+)Ensemblpanpan1.1panPan2
LRRFIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12548,292,968 - 48,370,727 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2548,292,720 - 48,370,469 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2548,728,723 - 48,867,611 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02548,616,990 - 48,756,690 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12548,492,971 - 48,632,310 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02548,281,181 - 48,420,794 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02548,513,209 - 48,652,419 (+)NCBIUU_Cfam_GSD_1.0
Lrrfip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303190,276,636 - 190,346,654 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936525593,054 - 662,958 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936525593,048 - 663,066 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRFIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15137,283,276 - 137,439,385 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115137,283,262 - 137,439,383 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215151,754,416 - 151,847,486 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LRRFIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110123,632,545 - 123,806,348 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10123,707,283 - 123,809,140 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604075,606,481 - 75,775,458 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrrfip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248472,993,291 - 3,094,961 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248472,993,251 - 3,095,611 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lrrfip1
640 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:147
Count of miRNA genes:104
Interacting mature miRNAs:128
Transcripts:ENSRNOT00000050191
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)977813894101597663Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)97927151191616855Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)97927151191616855Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)97927151191616855Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)98636963192058970Rat

Markers in Region
BE107608  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2991,689,143 - 91,689,319 (+)MAPPERmRatBN7.2
Rnor_6.0998,237,038 - 98,237,213NCBIRnor6.0
Rnor_5.0997,919,240 - 97,919,415UniSTSRnor5.0
RGSC_v3.4990,326,282 - 90,326,457UniSTSRGSC3.4
Celera989,231,740 - 89,231,915UniSTS
RH 3.4 Map9784.59UniSTS
Cytogenetic Map9q36UniSTS
RH129755  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2991,709,581 - 91,709,761 (+)MAPPERmRatBN7.2
Rnor_6.0998,257,480 - 98,257,659NCBIRnor6.0
Rnor_5.0997,939,682 - 97,939,861UniSTSRnor5.0
RGSC_v3.4990,346,724 - 90,346,903UniSTSRGSC3.4
Celera989,252,166 - 89,252,345UniSTS
Cytogenetic Map9q36UniSTS
BE119589  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2991,680,127 - 91,680,280 (+)MAPPERmRatBN7.2
Rnor_6.0998,229,520 - 98,229,672NCBIRnor6.0
Rnor_6.0998,223,571 - 98,223,723NCBIRnor6.0
Rnor_5.0997,907,064 - 97,907,216UniSTSRnor5.0
Rnor_5.0997,911,722 - 97,911,874UniSTSRnor5.0
RGSC_v3.4990,317,329 - 90,317,481UniSTSRGSC3.4
Celera989,222,812 - 89,222,964UniSTS
Cytogenetic Map9q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 42 30 19 30 8 10 54 35 33 11 8
Low 15 11 11 1 20 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001014269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC081883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000050191   ⟹   ENSRNOP00000045021
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl991,643,197 - 91,709,842 (+)Ensembl
Rnor_6.0 Ensembl998,190,829 - 98,257,735 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095067   ⟹   ENSRNOP00000088829
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl991,643,197 - 91,720,250 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100450   ⟹   ENSRNOP00000077964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl991,643,197 - 91,720,250 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100660   ⟹   ENSRNOP00000076434
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl991,643,230 - 91,709,836 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100990   ⟹   ENSRNOP00000080509
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl991,643,197 - 91,720,250 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112051   ⟹   ENSRNOP00000076897
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl991,643,230 - 91,709,836 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112176   ⟹   ENSRNOP00000078450
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl991,643,197 - 91,709,842 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119489   ⟹   ENSRNOP00000095213
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl991,643,197 - 91,720,250 (+)Ensembl
RefSeq Acc Id: NM_001014269   ⟹   NP_001014291
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,090,850 - 99,157,393 (+)NCBI
mRatBN7.2991,643,291 - 91,709,838 (+)NCBI
Rnor_6.0998,190,829 - 98,257,736 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
RGSC_v3.4990,278,891 - 90,346,980 (+)RGD
Celera989,186,375 - 89,252,422 (+)RGD
Sequence:
RefSeq Acc Id: XM_006245444   ⟹   XP_006245506
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,590 - 99,157,396 (+)NCBI
mRatBN7.2991,592,032 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245445   ⟹   XP_006245507
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,090,509 - 99,157,396 (+)NCBI
mRatBN7.2991,642,947 - 91,709,841 (+)NCBI
Rnor_6.0998,190,735 - 98,257,739 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245446   ⟹   XP_006245508
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,157,396 (+)NCBI
mRatBN7.2991,592,032 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245447   ⟹   XP_006245509
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,157,396 (+)NCBI
mRatBN7.2991,592,032 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245448   ⟹   XP_006245510
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,157,396 (+)NCBI
mRatBN7.2991,592,032 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245450   ⟹   XP_006245512
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,157,396 (+)NCBI
mRatBN7.2991,592,033 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245452   ⟹   XP_006245514
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,157,396 (+)NCBI
mRatBN7.2991,592,033 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245455   ⟹   XP_006245517
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,157,396 (+)NCBI
mRatBN7.2991,592,034 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245456   ⟹   XP_006245518
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,090,518 - 99,157,396 (+)NCBI
mRatBN7.2991,642,956 - 91,709,841 (+)NCBI
Rnor_6.0998,190,736 - 98,257,739 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245457   ⟹   XP_006245519
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,090,508 - 99,157,396 (+)NCBI
mRatBN7.2991,642,958 - 91,709,841 (+)NCBI
Rnor_6.0998,190,736 - 98,257,739 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245458   ⟹   XP_006245520
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,598 - 99,157,396 (+)NCBI
mRatBN7.2991,592,035 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245459   ⟹   XP_006245521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,167,805 (+)NCBI
mRatBN7.2991,592,032 - 91,720,250 (+)NCBI
Rnor_6.0998,139,484 - 98,268,148 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245460   ⟹   XP_006245522
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,167,805 (+)NCBI
mRatBN7.2991,592,033 - 91,720,250 (+)NCBI
Rnor_6.0998,139,484 - 98,268,148 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245461   ⟹   XP_006245523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,090,512 - 99,167,805 (+)NCBI
mRatBN7.2991,642,950 - 91,720,250 (+)NCBI
Rnor_6.0998,190,736 - 98,268,148 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245462   ⟹   XP_006245524
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,167,805 (+)NCBI
mRatBN7.2991,592,033 - 91,720,250 (+)NCBI
Rnor_6.0998,139,484 - 98,268,148 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245463   ⟹   XP_006245525
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,167,805 (+)NCBI
mRatBN7.2991,592,034 - 91,720,250 (+)NCBI
Rnor_6.0998,139,484 - 98,268,148 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245464   ⟹   XP_006245526
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,167,805 (+)NCBI
mRatBN7.2991,592,036 - 91,720,250 (+)NCBI
Rnor_6.0998,139,484 - 98,268,148 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245465   ⟹   XP_006245527
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,167,805 (+)NCBI
mRatBN7.2991,592,037 - 91,720,250 (+)NCBI
Rnor_6.0998,139,485 - 98,268,148 (+)NCBI
Rnor_5.0997,820,647 - 97,950,350 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767285   ⟹   XP_008765507
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,157,396 (+)NCBI
mRatBN7.2991,592,032 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596579   ⟹   XP_017452068
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,157,396 (+)NCBI
mRatBN7.2991,592,033 - 91,709,841 (+)NCBI
Rnor_6.0998,139,484 - 98,257,739 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039083982   ⟹   XP_038939910
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,090,509 - 99,157,396 (+)NCBI
mRatBN7.2991,642,947 - 91,709,841 (+)NCBI
RefSeq Acc Id: XM_039083983   ⟹   XP_038939911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,157,396 (+)NCBI
mRatBN7.2991,592,032 - 91,709,841 (+)NCBI
RefSeq Acc Id: XM_039083994   ⟹   XP_038939922
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,167,805 (+)NCBI
mRatBN7.2991,592,032 - 91,720,250 (+)NCBI
RefSeq Acc Id: XM_039083995   ⟹   XP_038939923
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,167,805 (+)NCBI
mRatBN7.2991,592,033 - 91,720,250 (+)NCBI
RefSeq Acc Id: XM_039083996   ⟹   XP_038939924
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,167,805 (+)NCBI
mRatBN7.2991,592,036 - 91,720,250 (+)NCBI
RefSeq Acc Id: XM_039083997   ⟹   XP_038939925
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,090,508 - 99,167,805 (+)NCBI
mRatBN7.2991,642,968 - 91,720,250 (+)NCBI
RefSeq Acc Id: XM_039083998   ⟹   XP_038939926
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,090,512 - 99,167,805 (+)NCBI
mRatBN7.2991,642,950 - 91,720,250 (+)NCBI
RefSeq Acc Id: XM_039083999   ⟹   XP_038939927
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,167,805 (+)NCBI
mRatBN7.2991,592,035 - 91,720,250 (+)NCBI
RefSeq Acc Id: XM_039084000   ⟹   XP_038939928
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,167,805 (+)NCBI
mRatBN7.2991,592,035 - 91,720,250 (+)NCBI
RefSeq Acc Id: XM_039084002   ⟹   XP_038939930
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,167,805 (+)NCBI
mRatBN7.2991,592,036 - 91,720,250 (+)NCBI
RefSeq Acc Id: XM_063267521   ⟹   XP_063123591
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,157,396 (+)NCBI
RefSeq Acc Id: XM_063267522   ⟹   XP_063123592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,157,396 (+)NCBI
RefSeq Acc Id: XM_063267523   ⟹   XP_063123593
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,090,518 - 99,157,396 (+)NCBI
RefSeq Acc Id: XM_063267525   ⟹   XP_063123595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,157,396 (+)NCBI
RefSeq Acc Id: XM_063267526   ⟹   XP_063123596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,157,396 (+)NCBI
RefSeq Acc Id: XM_063267527   ⟹   XP_063123597
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,090,508 - 99,157,396 (+)NCBI
RefSeq Acc Id: XM_063267528   ⟹   XP_063123598
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,090,520 - 99,157,396 (+)NCBI
RefSeq Acc Id: XM_063267529   ⟹   XP_063123599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,090,510 - 99,167,805 (+)NCBI
RefSeq Acc Id: XM_063267530   ⟹   XP_063123600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,167,805 (+)NCBI
RefSeq Acc Id: XM_063267531   ⟹   XP_063123601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,167,805 (+)NCBI
RefSeq Acc Id: XM_063267532   ⟹   XP_063123602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,167,805 (+)NCBI
RefSeq Acc Id: XM_063267533   ⟹   XP_063123603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,167,805 (+)NCBI
RefSeq Acc Id: XM_063267534   ⟹   XP_063123604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,167,805 (+)NCBI
RefSeq Acc Id: XM_063267535   ⟹   XP_063123605
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,167,805 (+)NCBI
RefSeq Acc Id: XM_063267536   ⟹   XP_063123606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,167,805 (+)NCBI
RefSeq Acc Id: XM_063267537   ⟹   XP_063123607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,167,805 (+)NCBI
RefSeq Acc Id: XM_063267538   ⟹   XP_063123608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,039,605 - 99,167,805 (+)NCBI
RefSeq Acc Id: XM_063267539   ⟹   XP_063123609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,090,508 - 99,167,805 (+)NCBI
RefSeq Acc Id: XM_063267540   ⟹   XP_063123610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,090,526 - 99,167,805 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001014291 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245506 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245507 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245508 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245509 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245510 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245512 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245514 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245517 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245518 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245519 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245520 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245521 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245522 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245523 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245524 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245525 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245526 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245527 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765507 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452068 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939910 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939911 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939922 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939923 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939924 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939925 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939926 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939927 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939928 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939930 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123591 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123592 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123593 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123595 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123596 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123597 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123598 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123599 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123600 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123601 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123602 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123603 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123604 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123605 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123606 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123607 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123608 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123609 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123610 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH81883 (Get FASTA)   NCBI Sequence Viewer  
  EDL92040 (Get FASTA)   NCBI Sequence Viewer  
  EDL92041 (Get FASTA)   NCBI Sequence Viewer  
  EDL92042 (Get FASTA)   NCBI Sequence Viewer  
  EDL92043 (Get FASTA)   NCBI Sequence Viewer  
  EDL92044 (Get FASTA)   NCBI Sequence Viewer  
  EDL92045 (Get FASTA)   NCBI Sequence Viewer  
  EDL92046 (Get FASTA)   NCBI Sequence Viewer  
  EDL92047 (Get FASTA)   NCBI Sequence Viewer  
  EDL92048 (Get FASTA)   NCBI Sequence Viewer  
  EDL92049 (Get FASTA)   NCBI Sequence Viewer  
  EDL92050 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000045021.3
  ENSRNOP00000076434
  ENSRNOP00000076434.1
  ENSRNOP00000076897
  ENSRNOP00000076897.1
  ENSRNOP00000077964
  ENSRNOP00000077964.1
  ENSRNOP00000078450
  ENSRNOP00000078450.1
  ENSRNOP00000080509.1
  ENSRNOP00000088829.1
  ENSRNOP00000095213
  ENSRNOP00000095213.1
GenBank Protein Q66HF9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001014291   ⟸   NM_001014269
- UniProtKB: Q66HF9 (UniProtKB/Swiss-Prot),   A6JQP6 (UniProtKB/TrEMBL),   A0A8L2QNX6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245506   ⟸   XM_006245444
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006245510   ⟸   XM_006245448
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006245512   ⟸   XM_006245450
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006245509   ⟸   XM_006245447
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006245514   ⟸   XM_006245452
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006245508   ⟸   XM_006245446
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006245521   ⟸   XM_006245459
- Peptide Label: isoform X23
- UniProtKB: A6JQN7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245524   ⟸   XM_006245462
- Peptide Label: isoform X31
- UniProtKB: A6JQN8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245525   ⟸   XM_006245463
- Peptide Label: isoform X34
- UniProtKB: A6JQN8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245522   ⟸   XM_006245460
- Peptide Label: isoform X25
- UniProtKB: A6JQN7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245517   ⟸   XM_006245455
- Peptide Label: isoform X13
- UniProtKB: A0A8L2QNX6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245520   ⟸   XM_006245458
- Peptide Label: isoform X22
- UniProtKB: A0A8L2QNX6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245526   ⟸   XM_006245464
- Peptide Label: isoform X41
- UniProtKB: A6JQN9 (UniProtKB/TrEMBL),   A6JQP5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245527   ⟸   XM_006245465
- Peptide Label: isoform X44
- UniProtKB: A6JQP0 (UniProtKB/TrEMBL),   A6JQP5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245507   ⟸   XM_006245445
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006245523   ⟸   XM_006245461
- Peptide Label: isoform X27
- UniProtKB: A0A8I5Y1S8 (UniProtKB/TrEMBL),   A6JQP1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245518   ⟸   XM_006245456
- Peptide Label: isoform X14
- UniProtKB: A0A8L2QNX6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245519   ⟸   XM_006245457
- Peptide Label: isoform X16
- UniProtKB: A0A8I5Y5U1 (UniProtKB/TrEMBL),   A0A8L2QNX6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765507   ⟸   XM_008767285
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017452068   ⟸   XM_017596579
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: ENSRNOP00000045021   ⟸   ENSRNOT00000050191
RefSeq Acc Id: XP_038939922   ⟸   XM_039083994
- Peptide Label: isoform X28
- UniProtKB: A6JQN7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939911   ⟸   XM_039083983
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038939923   ⟸   XM_039083995
- Peptide Label: isoform X30
- UniProtKB: A6JQN7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939927   ⟸   XM_039083999
- Peptide Label: isoform X47
- UniProtKB: A6JQP5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939928   ⟸   XM_039084000
- Peptide Label: isoform X48
- UniProtKB: A6JQP5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939930   ⟸   XM_039084002
- Peptide Label: isoform X49
- UniProtKB: A6JQP5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939924   ⟸   XM_039083996
- Peptide Label: isoform X40
RefSeq Acc Id: XP_038939910   ⟸   XM_039083982
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038939926   ⟸   XM_039083998
- Peptide Label: isoform X46
- UniProtKB: A6JQP1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939925   ⟸   XM_039083997
- Peptide Label: isoform X45
- UniProtKB: A6JQP4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000080509   ⟸   ENSRNOT00000100990
RefSeq Acc Id: ENSRNOP00000077964   ⟸   ENSRNOT00000100450
RefSeq Acc Id: ENSRNOP00000088829   ⟸   ENSRNOT00000095067
RefSeq Acc Id: ENSRNOP00000076897   ⟸   ENSRNOT00000112051
RefSeq Acc Id: ENSRNOP00000078450   ⟸   ENSRNOT00000112176
RefSeq Acc Id: ENSRNOP00000076434   ⟸   ENSRNOT00000100660
RefSeq Acc Id: ENSRNOP00000095213   ⟸   ENSRNOT00000119489
RefSeq Acc Id: XP_063123600   ⟸   XM_063267530
- Peptide Label: isoform X26
RefSeq Acc Id: XP_063123603   ⟸   XM_063267533
- Peptide Label: isoform X33
RefSeq Acc Id: XP_063123601   ⟸   XM_063267531
- Peptide Label: isoform X29
RefSeq Acc Id: XP_063123602   ⟸   XM_063267532
- Peptide Label: isoform X32
RefSeq Acc Id: XP_063123604   ⟸   XM_063267534
- Peptide Label: isoform X35
RefSeq Acc Id: XP_063123605   ⟸   XM_063267535
- Peptide Label: isoform X36
RefSeq Acc Id: XP_063123606   ⟸   XM_063267536
- Peptide Label: isoform X37
RefSeq Acc Id: XP_063123607   ⟸   XM_063267537
- Peptide Label: isoform X38
RefSeq Acc Id: XP_063123608   ⟸   XM_063267538
- Peptide Label: isoform X39
RefSeq Acc Id: XP_063123591   ⟸   XM_063267521
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063123596   ⟸   XM_063267526
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063123592   ⟸   XM_063267522
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063123595   ⟸   XM_063267525
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063123609   ⟸   XM_063267539
- Peptide Label: isoform X42
RefSeq Acc Id: XP_063123597   ⟸   XM_063267527
- Peptide Label: isoform X20
RefSeq Acc Id: XP_063123599   ⟸   XM_063267529
- Peptide Label: isoform X24
- UniProtKB: A0A8I6A6Y5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123593   ⟸   XM_063267523
- Peptide Label: isoform X17
- UniProtKB: A0A8I5Y0X7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123598   ⟸   XM_063267528
- Peptide Label: isoform X21
- UniProtKB: A0A8I5ZL04 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123610   ⟸   XM_063267540
- Peptide Label: isoform X43

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q66HF9-F1-model_v2 AlphaFold Q66HF9 1-738 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696853
Promoter ID:EPDNEW_R7378
Type:initiation region
Name:Lrrfip1_1
Description:LRR binding FLII interacting protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0998,190,837 - 98,190,897EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359548 AgrOrtholog
BioCyc Gene G2FUF-26730 BioCyc
Ensembl Genes ENSRNOG00000019892 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000050191.3 UniProtKB/TrEMBL
  ENSRNOT00000095067.1 UniProtKB/TrEMBL
  ENSRNOT00000100450.1 UniProtKB/TrEMBL
  ENSRNOT00000100660.1 UniProtKB/TrEMBL
  ENSRNOT00000100990.1 UniProtKB/TrEMBL
  ENSRNOT00000112051.1 UniProtKB/TrEMBL
  ENSRNOT00000112176 ENTREZGENE
  ENSRNOT00000112176.1 UniProtKB/TrEMBL
  ENSRNOT00000119489.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.4090 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7108398 IMAGE-MGC_LOAD
InterPro LRRFIP1/2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:367314 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:93757 IMAGE-MGC_LOAD
NCBI Gene 367314 ENTREZGENE
PANTHER LEUCINE-RICH REPEAT FLIGHTLESS-INTERACTING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR19212 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LRRFIP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lrrfip1 PhenoGen
RatGTEx ENSRNOG00000019892 RatGTEx
UniProt A0A8I5Y0X7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y1S8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y5U1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZL04 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZPV3_RAT UniProtKB/TrEMBL
  A0A8I6A6Y5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GL21_RAT UniProtKB/TrEMBL
  A0A8L2QNX6 ENTREZGENE, UniProtKB/TrEMBL
  A6JQN7 ENTREZGENE, UniProtKB/TrEMBL
  A6JQN8 ENTREZGENE, UniProtKB/TrEMBL
  A6JQN9 ENTREZGENE, UniProtKB/TrEMBL
  A6JQP0 ENTREZGENE, UniProtKB/TrEMBL
  A6JQP1 ENTREZGENE, UniProtKB/TrEMBL
  A6JQP4 ENTREZGENE, UniProtKB/TrEMBL
  A6JQP5 ENTREZGENE, UniProtKB/TrEMBL
  A6JQP6 ENTREZGENE, UniProtKB/TrEMBL
  LRRF1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-29 Lrrfip1  LRR binding FLII interacting protein 1  Lrrfip1  leucine rich repeat (in FLII) interacting protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-07-25 Lrrfip1  leucine rich repeat (in FLII) interacting protein 1  LOC367314  similar to FLI-LRR associated protein-1  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2005-07-29 LOC367314  similar to FLI-LRR associated protein-1      Symbol and Name status set to provisional 70820 PROVISIONAL