Pigq (phosphatidylinositol glycan anchor biosynthesis, class Q) - Rat Genome Database

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Gene: Pigq (phosphatidylinositol glycan anchor biosynthesis, class Q) Rattus norvegicus
Analyze
Symbol: Pigq
Name: phosphatidylinositol glycan anchor biosynthesis, class Q
RGD ID: 1359535
Description: Predicted to contribute to phosphatidylinositol N-acetylglucosaminyltransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in multiple congenital anomalies-hypotonia-seizures syndrome 4. Orthologous to human PIGQ (phosphatidylinositol glycan anchor biosynthesis class Q); PARTICIPATES IN glycosylphosphatidylinositol anchor biosynthetic pathway; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,4-dinitrotoluene; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC93737; phosphatidylinositol glycan, class Q; phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,447,080 - 15,463,088 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1015,447,081 - 15,463,088 (-)EnsemblGRCr8
mRatBN7.21014,942,571 - 14,958,584 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1014,942,577 - 14,958,584 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1019,681,739 - 19,697,787 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01019,170,614 - 19,186,668 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01014,670,700 - 14,686,739 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01015,289,530 - 15,305,593 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,289,536 - 15,305,549 (-)Ensemblrn6Rnor6.0
Rnor_5.01015,102,505 - 15,118,589 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41015,188,278 - 15,204,292 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1014,611,423 - 14,627,428 (-)NCBICelera
RGSC_v3.11015,188,278 - 15,204,665 (-)NCBI
Cytogenetic Map10q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GPI1 stabilizes an enzyme essential in the first step of glycosylphosphatidylinositol biosynthesis. Hong Y, etal., J Biol Chem 1999 Jun 25;274(26):18582-8.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:9729469  


Genomics

Comparative Map Data
Pigq
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,447,080 - 15,463,088 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1015,447,081 - 15,463,088 (-)EnsemblGRCr8
mRatBN7.21014,942,571 - 14,958,584 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1014,942,577 - 14,958,584 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1019,681,739 - 19,697,787 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01019,170,614 - 19,186,668 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01014,670,700 - 14,686,739 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01015,289,530 - 15,305,593 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,289,536 - 15,305,549 (-)Ensemblrn6Rnor6.0
Rnor_5.01015,102,505 - 15,118,589 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41015,188,278 - 15,204,292 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1014,611,423 - 14,627,428 (-)NCBICelera
RGSC_v3.11015,188,278 - 15,204,665 (-)NCBI
Cytogenetic Map10q12NCBI
PIGQ
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816569,968 - 584,109 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16566,995 - 584,120 (+)Ensemblhg38GRCh38
GRCh3716619,968 - 634,109 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3616560,005 - 574,110 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3416560,004 - 574,109NCBI
Celera16820,410 - 834,887 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef16541,643 - 556,095 (+)NCBIHuRef
CHM1_116619,978 - 634,251 (+)NCBICHM1_1
T2T-CHM13v2.016573,385 - 587,926 (+)NCBIT2T-CHM13v2.0
Pigq
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,145,398 - 26,161,855 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1726,145,395 - 26,163,910 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381725,926,420 - 25,942,881 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,926,421 - 25,944,936 (-)Ensemblmm10GRCm38
MGSCv371726,063,369 - 26,078,907 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361725,654,024 - 25,669,562 (-)NCBIMGSCv36mm8
Celera1726,459,444 - 26,474,992 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.01NCBI
Pigq
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544216,620,009 - 16,631,343 (-)Ensembl
ChiLan1.0NW_00495544216,620,009 - 16,635,308 (-)NCBIChiLan1.0ChiLan1.0
PIGQ
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v218812,338 - 826,594 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1164,596,020 - 4,610,283 (+)NCBINHGRI_mPanPan1
PanPan1.116585,901 - 600,482 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16585,901 - 600,482 (+)EnsemblpanPan2panpan1.1
PIGQ
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,971,069 - 39,980,128 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl639,971,057 - 39,981,039 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha641,234,149 - 41,246,681 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0640,312,749 - 40,325,281 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl640,312,752 - 40,324,121 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1640,001,242 - 40,013,769 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0639,961,417 - 39,973,948 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0640,440,630 - 40,453,163 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pigq
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,317,372 - 112,332,023 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936501414,905 - 429,600 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936501415,232 - 429,902 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIGQ
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl341,160,657 - 41,176,318 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1341,164,399 - 41,177,453 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2341,262,708 - 41,274,620 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PIGQ
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.15492,997 - 505,084 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl5496,568 - 505,997 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606830,654,057 - 30,666,927 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pigq
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249131,383,624 - 1,397,396 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046249131,380,178 - 1,397,399 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Pigq
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v193,186,884 - 3,203,145 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pigq
112 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:172
Count of miRNA genes:128
Interacting mature miRNAs:147
Transcripts:ENSRNOT00000027353
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10666111835509383Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10666092373950353Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10589381150893811Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10589381150893811Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101499153586964295Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)101465354159653541Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10687714251877142Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135730538Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10130004247Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1092219745922197Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)10210370847103708Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10589381150893811Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10117749933Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138832698Rat

Markers in Region
RH130076  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21014,942,591 - 14,942,776 (+)MAPPERmRatBN7.2
Rnor_6.01015,289,551 - 15,289,735NCBIRnor6.0
Rnor_5.01015,102,526 - 15,102,710UniSTSRnor5.0
RGSC_v3.41015,188,294 - 15,188,478UniSTSRGSC3.4
Celera1014,611,439 - 14,611,623UniSTS
RH 3.4 Map10148.79UniSTS
Cytogenetic Map10q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 92 59 6 356 192 11 140 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001007607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC126071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC081875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000027353   ⟹   ENSRNOP00000027353
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1015,447,081 - 15,463,088 (-)Ensembl
mRatBN7.2 Ensembl1014,942,577 - 14,958,584 (-)Ensembl
Rnor_6.0 Ensembl1015,289,536 - 15,305,549 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112274   ⟹   ENSRNOP00000077777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1014,945,211 - 14,957,871 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113327   ⟹   ENSRNOP00000083049
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1015,448,417 - 15,463,088 (-)Ensembl
mRatBN7.2 Ensembl1014,943,913 - 14,957,871 (-)Ensembl
RefSeq Acc Id: NM_001007607   ⟹   NP_001007608
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,447,080 - 15,463,088 (-)NCBI
mRatBN7.21014,942,576 - 14,958,584 (-)NCBI
Rnor_6.01015,289,535 - 15,305,549 (-)NCBI
Rnor_5.01015,102,505 - 15,118,589 (-)NCBI
RGSC_v3.41015,188,278 - 15,204,292 (-)RGD
Celera1014,611,423 - 14,627,428 (-)RGD
Sequence:
RefSeq Acc Id: XM_006245942   ⟹   XP_006246004
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,447,080 - 15,462,379 (-)NCBI
mRatBN7.21014,942,571 - 14,958,011 (-)NCBI
Rnor_6.01015,289,530 - 15,304,809 (-)NCBI
Rnor_5.01015,102,505 - 15,118,589 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597070   ⟹   XP_017452559
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,447,080 - 15,462,471 (-)NCBI
mRatBN7.21014,942,571 - 14,958,016 (-)NCBI
Rnor_6.01015,289,530 - 15,304,810 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039085366   ⟹   XP_038941294
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,447,080 - 15,462,381 (-)NCBI
mRatBN7.21014,942,571 - 14,957,880 (-)NCBI
RefSeq Acc Id: XM_063268570   ⟹   XP_063124640
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,447,080 - 15,462,379 (-)NCBI
RefSeq Acc Id: XR_005489717
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,451,195 - 15,462,379 (-)NCBI
mRatBN7.21014,946,691 - 14,957,872 (-)NCBI
RefSeq Acc Id: NP_001007608   ⟸   NM_001007607
- UniProtKB: Q642B8 (UniProtKB/TrEMBL),   F7F5K8 (UniProtKB/TrEMBL),   A0A8I5ZV93 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006246004   ⟸   XM_006245942
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017452559   ⟸   XM_017597070
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000027353   ⟸   ENSRNOT00000027353
RefSeq Acc Id: XP_038941294   ⟸   XM_039085366
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000083049   ⟸   ENSRNOT00000113327
Ensembl Acc Id: ENSRNOP00000077777   ⟸   ENSRNOT00000112274
RefSeq Acc Id: XP_063124640   ⟸   XM_063268570
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q642B8-F1-model_v2 AlphaFold Q642B8 1-581 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697066
Promoter ID:EPDNEW_R7591
Type:multiple initiation site
Name:Pigq_1
Description:phosphatidylinositol glycan anchor biosynthesis, class Q
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01015,305,576 - 15,305,636EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359535 AgrOrtholog
BioCyc Gene G2FUF-25742 BioCyc
Ensembl Genes ENSRNOG00000020140 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000027353 ENTREZGENE
  ENSRNOT00000027353.6 UniProtKB/TrEMBL
  ENSRNOT00000113327.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7107681 IMAGE-MGC_LOAD
InterPro GlcNAc_Gpi1 UniProtKB/TrEMBL
KEGG Report rno:287159 UniProtKB/TrEMBL
MGC_CLONE MGC:93737 IMAGE-MGC_LOAD
NCBI Gene 287159 ENTREZGENE
PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT Q UniProtKB/TrEMBL
  PTHR21329 UniProtKB/TrEMBL
Pfam Gpi1 UniProtKB/TrEMBL
PhenoGen Pigq PhenoGen
RatGTEx ENSRNOG00000020140 RatGTEx
UniProt A0A8I5ZV93 ENTREZGENE, UniProtKB/TrEMBL
  F7F5K8 ENTREZGENE, UniProtKB/TrEMBL
  Q642B8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Pigq  phosphatidylinositol glycan anchor biosynthesis, class Q  Pigq  phosphatidylinositol glycan, class Q  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Pigq  phosphatidylinositol glycan, class Q      Symbol and Name status set to approved 1299863 APPROVED
2005-07-29 Pigq  phosphatidylinositol glycan, class Q      Symbol and Name status set to provisional 70820 PROVISIONAL