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Gene: Babam1 (BRISC and BRCA1 A complex member 1) Rattus norvegicus

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Symbol:

Babam1

Name:

BRISC and BRCA1 A complex member 1

RGD ID:

1359516

Description:

Predicted to enable identical protein binding activity. Predicted to be involved in several processes, including DNA repair-dependent chromatin remodeling; mitotic G2 DNA damage checkpoint signaling; and positive regulation of DNA repair. Predicted to act upstream of or within hematopoietic stem cell proliferation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of BRCA1-A complex and BRISC complex. Predicted to be active in nuclear body. Orthologous to human BABAM1 (BRISC and BRCA1 A complex member 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

BRCA1-A complex subunit MERIT40; BRISC and BRCA1-A complex member 1; mediator of RAP80 interactions and targeting subunit of 40 kDa; Merit40; MGC94542; new component of the BRCA1-A complex; similar to RIKEN cDNA 5430437P03

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	18,102,885 - 18,108,916 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	18,102,815 - 18,108,932 (+)	Ensembl				GRCr8
mRatBN7.2	16	18,068,830 - 18,074,938 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	18,068,884 - 18,074,923 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	18,120,563 - 18,126,599 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	19,253,114 - 19,259,150 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	18,173,484 - 18,179,520 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	19,792,720 - 19,798,886 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	19,792,838 - 19,798,894 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	19,652,945 - 19,659,019 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	18,558,063 - 18,564,094 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	18,274,474 - 18,280,505 (+)	NCBI		Celera
RGSC_v3.1	16	18,558,060 - 18,564,091 (+)	NCBI
Cytogenetic Map	16	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Ovarian Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3,4-methylenedioxymethamphetamine (EXP)

4,4'-sulfonyldiphenol (EXP,ISO)

aconitine (EXP)

acrylamide (ISO)

all-trans-retinoic acid (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

coumarin (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

flutamide (EXP)

FR900359 (ISO)

glafenine (EXP)

hydrogen peroxide (ISO)

ivermectin (ISO)

Mesaconitine (EXP)

rotenone (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

thiram (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell division (IEA)

chromatin organization (IEA)

DNA damage response (IEA)

DNA repair (IEA)

DNA repair-dependent chromatin remodeling (ISO,ISS)

double-strand break repair (IBA,ISO,ISS)

hematopoietic stem cell proliferation (ISO)

mitotic G2 DNA damage checkpoint signaling (IBA,ISO,ISS)

positive regulation of DNA repair (IEA,ISO,ISS)

response to ionizing radiation (ISO,ISS)

Cellular Component

BRCA1-A complex (IBA,IEA,ISO,ISS)

BRISC complex (IBA,IEA,ISO,ISS)

cytoplasm (IEA,ISO,ISS)

nuclear body (IBA,ISO)

nucleoplasm (ISO)

nucleus (IEA,ISO,ISS)

Molecular Function

identical protein binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:19214193	PMID:19261746	PMID:19261748	PMID:19261749	PMID:24075985	PMID:25002582	PMID:25636339	PMID:25931508

Genomics

Comparative Map Data

Babam1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	18,102,885 - 18,108,916 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	18,102,815 - 18,108,932 (+)	Ensembl				GRCr8
mRatBN7.2	16	18,068,830 - 18,074,938 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	18,068,884 - 18,074,923 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	18,120,563 - 18,126,599 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	19,253,114 - 19,259,150 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	18,173,484 - 18,179,520 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	19,792,720 - 19,798,886 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	19,792,838 - 19,798,894 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	19,652,945 - 19,659,019 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	18,558,063 - 18,564,094 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	18,274,474 - 18,280,505 (+)	NCBI		Celera
RGSC_v3.1	16	18,558,060 - 18,564,091 (+)	NCBI
Cytogenetic Map	16	p14	NCBI

BABAM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	17,267,443 - 17,279,337 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	17,267,343 - 17,281,249 (+)	Ensembl			hg38	GRCh38
GRCh37	19	17,378,252 - 17,390,146 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	17,239,232 - 17,251,162 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	19	17,279,989 - 17,291,905 (+)	NCBI		Celera
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	16,945,293 - 16,956,825 (+)	NCBI		HuRef
CHM1_1	19	17,377,705 - 17,389,627 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	17,402,324 - 17,414,225 (+)	NCBI		T2T-CHM13v2.0

Babam1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	71,848,809 - 71,857,416 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	71,849,505 - 71,857,263 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	71,396,165 - 71,404,772 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	71,396,861 - 71,404,619 (+)	Ensembl			mm10	GRCm38
MGSCv37	8	73,920,754 - 73,928,671 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	74,325,857 - 74,333,534 (+)	NCBI		MGSCv36	mm8
Celera	8	73,921,564 - 73,929,453 (+)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI
cM Map	8	34.43	NCBI

Babam1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	937,815 - 944,456 (-)	Ensembl
ChiLan1.0	NW_004955524	939,250 - 944,457 (-)	NCBI	ChiLan1.0	ChiLan1.0

BABAM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	22,138,611 - 22,150,726 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	21,145,191 - 21,157,305 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	16,755,518 - 16,767,634 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	17,729,538 - 17,742,447 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	17,729,568 - 17,742,447 (+)	Ensembl			panPan2	panpan1.1

BABAM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	45,466,808 - 45,474,953 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	45,466,805 - 45,473,009 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	45,379,964 - 45,388,251 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	45,953,015 - 45,961,089 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	45,952,694 - 45,961,070 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	45,189,654 - 45,197,742 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	45,599,463 - 45,607,542 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	45,875,319 - 45,883,410 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Babam1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	204,025,368 - 204,033,247 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936596	3,574,476 - 3,582,421 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936596	3,574,507 - 3,582,370 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BABAM1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	60,398,191 - 60,407,557 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	60,398,170 - 60,407,742 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

BABAM1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	15,775,344 - 15,786,715 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	15,775,229 - 15,786,822 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666074	3,655,507 - 3,666,771 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Babam1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624908	654,759 - 661,190 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624908	654,886 - 660,589 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Babam1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	13	13,598,371 - 13,604,566 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Babam1
26 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	77
Count of miRNA genes:	70
Interacting mature miRNAs:	71
Transcripts:	ENSRNOT00000022938
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549842	Bp248	Blood pressure QTL 248		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	387123	45387123	Rat
2307172	Activ4	Activity QTL 4	3.71	0.00023	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	1	33425095	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	39568015	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	4234212	53708481	Rat
631517	Scl9	Serum cholesterol level QTL 9	3.3		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	16	15748006	25801629	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	4744222	49744222	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	1	26734272	Rat
631830	Alc7	Alcohol consumption QTL 7	2.9		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	1	26734272	Rat
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	4354822	49354822	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	16	387123	45387123	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	4234212	49757901	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4234212	66955197	Rat
1600369	Hcas8	Hepatocarcinoma susceptibility QTL 8			liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	16	16278184	27244292	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	39568015	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	839086	66195506	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	3386790	49757901	Rat
1300133	Rf24	Renal function QTL 24	3.64		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	16	3386790	26128267	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	839086	66195506	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	839086	66195506	Rat
634355	Rends4	Renal damage susceptibility QTL 4		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	16	1	26734272	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17730818	72536785	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	839086	52786090	Rat
2301406	Kidm39	Kidney mass QTL 39		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	16	15905802	60905802	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	839086	66195506	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	3301683	48301683	Rat

Markers in Region

RH135016

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	18,073,078 - 18,074,660 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	19,797,034 - 19,798,615	NCBI	Rnor6.0
Rnor_5.0	16	19,657,155 - 19,658,736	UniSTS	Rnor5.0
RGSC_v3.4	16	18,562,247 - 18,563,828	UniSTS	RGSC3.4
Celera	16	18,278,658 - 18,280,239	UniSTS
RH 3.4 Map	16	191.7	UniSTS
Cytogenetic Map	16	p14	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	92	59	6	356	192	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001006964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC130741	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC083685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000022938 ⟹ ENSRNOP00000022938

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	18,102,874 - 18,108,932 (+)	Ensembl
mRatBN7.2 Ensembl	16	18,068,884 - 18,074,923 (+)	Ensembl
Rnor_6.0 Ensembl	16	19,792,838 - 19,798,894 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000125794 ⟹ ENSRNOP00000102613

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	18,102,815 - 18,108,921 (+)	Ensembl

RefSeq Acc Id:

NM_001006964 ⟹ NP_001006965

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	18,102,885 - 18,108,916 (+)	NCBI
mRatBN7.2	16	18,068,895 - 18,074,926 (+)	NCBI
Rnor_6.0	16	19,792,850 - 19,798,881 (+)	NCBI
Rnor_5.0	16	19,652,945 - 19,659,019 (+)	NCBI
RGSC_v3.4	16	18,558,063 - 18,564,094 (+)	RGD
Celera	16	18,274,474 - 18,280,505 (+)	RGD

Sequence:

show sequence

GGAAGATGGCGGCTTCCTAGAGACCTGATTGACTGGCCCCGGTACCCAGGCAGTGGAACCTGCG
GCGGTGTGAACGCGCGCGAACTTTGTGTCGCCGCGGTCTAACTTCGACTCGGCTTGCTGCAGCT
TCAGGCAGGATCCTGGCTTCCACTATCCCCCCTCCATCCAACCACTCGGGAACTATGGAGGTAG
CCGAGGCCAACAGCCCCACTGAGGAGGAGGAAGAGGAAGAGGAGGAAGAAGGAGAGGAGCCGAT
TTCAGAGCCCAGGCCTCACACTCGCTCCAATCCTGAGGGGGCTGAGGACCGGGCCATCGGGGCT
CAGGCCAATGTGGGTAGCCGCAGCGAGGGCGAAGGTGAGGCAGCCACTGCAGATGATGGGGCGG
CCAGTGTCCCGGGAGCTGTGCCCAAGCCCTGGCAGGTACCAGCACCAGCATCTGAGGTCCAGAT
TCGAACACCAAGGGTCAACTGTCCAGAGAAAGTGATCATCTGTCTGGATCTTTCAGAGGAGATG
TCTGTGCCAAAGCTGGAGTCCTTTAATGGGTCCAGAACAAACGCCCTGAATGTGTCTCAGAAGA
TGGTTGAGATGTTTGTGCGCACGAAGCACAAGATTGACAAGAGCCACGAGTTTGCCTTGGTCGT
AGTGAACGACGACTCTGCCTGGTTGTCTGGCCTGACCTCTGACCCACGTGAACTCTGCAGCTGC
CTGTACGACCTAGAGACGGCATCCTGCTCCACATTCAATTTGGAAGGCCTCTTCAGCCTCATCC
AGCAGAAGACTGAGCTGCCAGTCACAGAGAATGTGCAAACCATCCCACCCCCCTACGTCGTGCG
CACCATCCTGGTCTACAGCCGCCCACCCTGCCAGCCCCAGTTCTCCTTGACTGAGCCCATGAAG
AAGATGTTCCAATGTCCCTACTTCTTCTTCGACATCATTTACATCCACAGTGGCCCTGAGGAAA
AGGAAGACGATATGAGCTGGAAGGACATGTTCGCCTTCATGGGCAGTCTGGACACCAAGGGCAC
CAGCTACAAGTATGCAGTAGCACTTGCTGGCCCCGCCCTGGAGCTGCACAACTGCGTGGCCAAG
TTGCTGGCCCACCCGCTGCAGAGGCCCTGCCAGAGCCACGCGAGCTATAGCCTGCTGGAAGAGG
ACGAAGAGGCCGGTGAGGGGGAGGCCACTGTGTGACAACTCCACACCGTCCCATGAGGAGAGAA
CCCACACCCTCGTCACTGGCACATGCTCAATCTCACACTGTCCACTGTAAAGTCATTCTTCCTG
GGACCATTTTTGTCATCGGAATAAAAGTCTGAGGCCCCAGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039094296 ⟹ XP_038950224

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	18,103,457 - 18,107,001 (+)	NCBI
mRatBN7.2	16	18,068,830 - 18,072,990 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001006965	(Get FASTA)	NCBI Sequence Viewer
	XP_038950224	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83685	(Get FASTA)	NCBI Sequence Viewer
	EDL90802	(Get FASTA)	NCBI Sequence Viewer
	EDL90803	(Get FASTA)	NCBI Sequence Viewer
	EDL90804	(Get FASTA)	NCBI Sequence Viewer
	EDL90805	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000022938
	ENSRNOP00000022938.3
GenBank Protein	Q5XIJ6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001006965 ⟸ NM_001006964

- UniProtKB:

Q5XIJ6 (UniProtKB/Swiss-Prot), A6K9T3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEVAEANSPTEEEEEEEEEEGEEPISEPRPHTRSNPEGAEDRAIGAQANVGSRSEGEGEAATAD
DGAASVPGAVPKPWQVPAPASEVQIRTPRVNCPEKVIICLDLSEEMSVPKLESFNGSRTNALNV
SQKMVEMFVRTKHKIDKSHEFALVVVNDDSAWLSGLTSDPRELCSCLYDLETASCSTFNLEGLF
SLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDIIYIHSG
PEEKEDDMSWKDMFAFMGSLDTKGTSYKYAVALAGPALELHNCVAKLLAHPLQRPCQSHASYSL
LEEDEEAGEGEATV

hide sequence

Ensembl Acc Id:

ENSRNOP00000022938 ⟸ ENSRNOT00000022938

RefSeq Acc Id:	XP_038950224 ⟸ XM_039094296
- Peptide Label:	isoform X1
- UniProtKB:	A6K9T2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000102613 ⟸ ENSRNOT00000125794

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XIJ6-F1-model_v2	AlphaFold	Q5XIJ6	1-334	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699997

Promoter ID:

EPDNEW_R10521

Type:

multiple initiation site

Name:

Babam1_1

Description:

BRISC and BRCA1 A complex member 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	19,792,839 - 19,792,899	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359516	AgrOrtholog
BioCyc Gene	G2FUF-11854	BioCyc
Ensembl Genes	ENSRNOG00000017071	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000022938	ENTREZGENE
	ENSRNOT00000022938.6	UniProtKB/Swiss-Prot
Gene3D-CATH	3.40.50.410	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7189038	IMAGE-MGC_LOAD
InterPro	BABAM1	UniProtKB/Swiss-Prot
	vWFA_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:290631	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94542	IMAGE-MGC_LOAD
NCBI Gene	290631	ENTREZGENE
PANTHER	BRISC AND BRCA1-A COMPLEX MEMBER 1	UniProtKB/Swiss-Prot
	PTHR15660	UniProtKB/Swiss-Prot
PhenoGen	Babam1	PhenoGen
RatGTEx	ENSRNOG00000017071	RatGTEx
Superfamily-SCOP	SSF53300	UniProtKB/Swiss-Prot
UniProt	A0ABK0LQG0_RAT	UniProtKB/TrEMBL
	A6K9T2	ENTREZGENE, UniProtKB/TrEMBL
	A6K9T3	ENTREZGENE, UniProtKB/TrEMBL
	BABA1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-05-16	Babam1	BRISC and BRCA1 A complex member 1	MGC94542	similar to RIKEN cDNA 5430437P03	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-29	MGC94542	similar to RIKEN cDNA 5430437P03			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD