Spata1 (spermatogenesis associated 1) - Rat Genome Database

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Gene: Spata1 (spermatogenesis associated 1) Rattus norvegicus
Analyze
Symbol: Spata1
Name: spermatogenesis associated 1
RGD ID: 1359500
Description: Predicted to be located in acrosomal vesicle. Orthologous to human SPATA1 (spermatogenesis associated 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; Cuprizon.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC362056; similar to RIKEN cDNA 4921536I21; spermatogenesis-associated protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82238,009,403 - 238,054,855 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2238,009,404 - 238,054,776 (-)EnsemblGRCr8
mRatBN7.22235,349,126 - 235,394,578 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2235,349,127 - 235,394,502 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2243,144,843 - 243,190,240 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02241,036,253 - 241,081,648 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02235,902,477 - 235,947,877 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02252,313,293 - 252,359,798 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2252,314,426 - 252,359,798 (-)Ensemblrn6Rnor6.0
Rnor_5.02270,841,390 - 270,886,775 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42244,656,916 - 244,702,698 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2227,328,853 - 227,374,213 (-)NCBICelera
RGSC_v3.12244,643,656 - 244,689,438 (-)NCBI
Cytogenetic Map2q44NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
acrosomal vesicle  (IEA,ISO,ISS)
cytoplasmic vesicle  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
Spata1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82238,009,403 - 238,054,855 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2238,009,404 - 238,054,776 (-)EnsemblGRCr8
mRatBN7.22235,349,126 - 235,394,578 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2235,349,127 - 235,394,502 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2243,144,843 - 243,190,240 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02241,036,253 - 241,081,648 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02235,902,477 - 235,947,877 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02252,313,293 - 252,359,798 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2252,314,426 - 252,359,798 (-)Ensemblrn6Rnor6.0
Rnor_5.02270,841,390 - 270,886,775 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42244,656,916 - 244,702,698 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2227,328,853 - 227,374,213 (-)NCBICelera
RGSC_v3.12244,643,656 - 244,689,438 (-)NCBI
Cytogenetic Map2q44NCBI
SPATA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38184,506,386 - 84,567,379 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl184,506,300 - 84,567,379 (+)Ensemblhg38GRCh38
GRCh37184,972,069 - 85,033,062 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36184,744,601 - 84,791,368 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34184,684,033 - 84,730,788NCBI
Celera183,216,252 - 83,262,706 (+)NCBICelera
Cytogenetic Map1p22.3NCBI
HuRef183,082,112 - 83,132,210 (+)NCBIHuRef
CHM1_1185,086,731 - 85,136,977 (+)NCBICHM1_1
T2T-CHM13v2.0184,346,767 - 84,407,753 (+)NCBIT2T-CHM13v2.0
Spata1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393146,162,955 - 146,205,548 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3146,162,951 - 146,205,508 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm383146,457,202 - 146,499,793 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3146,457,196 - 146,499,753 (-)Ensemblmm10GRCm38
MGSCv373146,120,167 - 146,162,717 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv363146,394,589 - 146,437,139 (-)NCBIMGSCv36mm8
Celera3152,907,200 - 152,944,027 (-)NCBICelera
Cytogenetic Map3H2NCBI
cM Map371.3NCBI
Spata1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554239,336,208 - 9,384,727 (-)NCBIChiLan1.0ChiLan1.0
SPATA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21142,329,371 - 142,436,133 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11141,492,878 - 141,590,593 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01117,054,781 - 117,121,414 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1185,915,597 - 85,966,025 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl185,915,597 - 85,962,650 (+)EnsemblpanPan2panpan1.1
SPATA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1663,333,426 - 63,389,872 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl663,238,875 - 63,389,925 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha665,982,564 - 66,037,244 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0663,873,918 - 63,928,612 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl663,775,583 - 63,928,915 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1663,402,224 - 63,456,520 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0663,370,982 - 63,425,224 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0663,876,819 - 63,931,485 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Spata1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505895,203,694 - 95,264,571 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366081,065,223 - 1,102,265 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPATA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6129,205,499 - 129,247,246 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.16129,165,807 - 129,248,006 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SPATA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12048,791,353 - 48,850,577 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2048,788,105 - 48,840,373 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603368,927,720 - 68,977,926 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spata1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474212,924,379 - 12,968,973 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Spata1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1314,405,335 - 14,451,949 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Spata1
405 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:182
Count of miRNA genes:140
Interacting mature miRNAs:155
Transcripts:ENSRNOT00000021063
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170656145239614549Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2221088977243501206Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2210956252251712708Rat
8693697Alc36Alcohol consumption QTL 3620.592drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2219814164239320906Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2214404877251712708Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2203664411248664411Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2204795005249795005Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2214404877251712708Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2214404877251712708Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2218051934251712708Rat
8693622Alc26Alcohol consumption QTL 262.40.667drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2223810546243965570Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2214404877251712708Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2196140964251540988Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2214404877251712708Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2205135267250135267Rat

Markers in Region
BE113911  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22235,349,163 - 235,349,335 (+)MAPPERmRatBN7.2
Rnor_6.02252,314,463 - 252,314,634NCBIRnor6.0
Rnor_5.02270,841,428 - 270,841,599UniSTSRnor5.0
RGSC_v3.42244,656,954 - 244,657,125UniSTSRGSC3.4
Celera2227,328,891 - 227,329,062UniSTS
Cytogenetic Map2q44UniSTS
RH141192  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22235,372,609 - 235,372,807 (+)MAPPERmRatBN7.2
Rnor_6.02252,337,909 - 252,338,106NCBIRnor6.0
Rnor_5.02270,864,874 - 270,865,071UniSTSRnor5.0
RGSC_v3.42244,680,400 - 244,680,597UniSTSRGSC3.4
Celera2227,352,324 - 227,352,521UniSTS
Cytogenetic Map2q44UniSTS
AV266943  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82238,009,564 - 238,009,669 (+)Marker Load Pipeline
mRatBN7.22235,349,286 - 235,349,392 (+)MAPPERmRatBN7.2
Rnor_6.02252,314,586 - 252,314,691NCBIRnor6.0
Rnor_5.02270,841,551 - 270,841,656UniSTSRnor5.0
RGSC_v3.42244,657,077 - 244,657,182UniSTSRGSC3.4
Celera2227,329,014 - 227,329,119UniSTS
Cytogenetic Map2q44UniSTS
BE098837  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22235,375,960 - 235,376,140 (+)MAPPERmRatBN7.2
Rnor_6.02252,341,258 - 252,341,437NCBIRnor6.0
Rnor_5.02270,868,223 - 270,868,402UniSTSRnor5.0
RGSC_v3.42244,683,749 - 244,683,928UniSTSRGSC3.4
Celera2227,355,673 - 227,355,852UniSTS
Cytogenetic Map2q44UniSTS
AI178777  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22235,354,528 - 235,354,621 (+)MAPPERmRatBN7.2
Rnor_6.02252,319,828 - 252,319,920NCBIRnor6.0
Rnor_5.02270,846,793 - 270,846,885UniSTSRnor5.0
RGSC_v3.42244,662,319 - 244,662,411UniSTSRGSC3.4
Celera2227,334,256 - 227,334,348UniSTS
Cytogenetic Map2q44UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 66 165 91 90 59 92 59 6 353 191 11 144 79 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001014177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC098557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC142185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000021063   ⟹   ENSRNOP00000021063
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2238,009,404 - 238,054,776 (-)Ensembl
mRatBN7.2 Ensembl2235,349,127 - 235,394,502 (-)Ensembl
Rnor_6.0 Ensembl2252,314,426 - 252,359,798 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095066   ⟹   ENSRNOP00000093363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2238,016,592 - 238,045,630 (-)Ensembl
mRatBN7.2 Ensembl2235,356,300 - 235,385,355 (-)Ensembl
RefSeq Acc Id: NM_001014177   ⟹   NP_001014199
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,009,403 - 238,054,776 (-)NCBI
mRatBN7.22235,349,126 - 235,394,502 (-)NCBI
Rnor_6.02252,314,425 - 252,359,798 (-)NCBI
Rnor_5.02270,841,390 - 270,886,775 (-)NCBI
RGSC_v3.42244,656,916 - 244,702,698 (-)RGD
Celera2227,328,853 - 227,374,213 (-)RGD
Sequence:
RefSeq Acc Id: XM_039102731   ⟹   XP_038958659
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,009,403 - 238,054,852 (-)NCBI
mRatBN7.22235,349,126 - 235,394,577 (-)NCBI
RefSeq Acc Id: XM_039102732   ⟹   XP_038958660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,016,198 - 238,054,688 (-)NCBI
mRatBN7.22235,349,126 - 235,394,412 (-)NCBI
RefSeq Acc Id: XM_039102733   ⟹   XP_038958661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,009,403 - 238,054,852 (-)NCBI
mRatBN7.22235,349,126 - 235,394,578 (-)NCBI
RefSeq Acc Id: XM_039102734   ⟹   XP_038958662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,009,403 - 238,054,852 (-)NCBI
mRatBN7.22235,349,126 - 235,394,577 (-)NCBI
RefSeq Acc Id: XM_063282232   ⟹   XP_063138302
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,016,198 - 238,054,854 (-)NCBI
RefSeq Acc Id: XM_063282233   ⟹   XP_063138303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,016,198 - 238,054,852 (-)NCBI
RefSeq Acc Id: XM_063282234   ⟹   XP_063138304
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,016,198 - 238,054,855 (-)NCBI
RefSeq Acc Id: XM_063282235   ⟹   XP_063138305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,009,403 - 238,054,801 (-)NCBI
RefSeq Acc Id: XM_063282236   ⟹   XP_063138306
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,016,198 - 238,054,854 (-)NCBI
RefSeq Acc Id: XM_063282237   ⟹   XP_063138307
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,009,403 - 238,054,803 (-)NCBI
RefSeq Acc Id: XM_063282238   ⟹   XP_063138308
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,009,403 - 238,054,846 (-)NCBI
RefSeq Acc Id: XM_063282239   ⟹   XP_063138309
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,009,403 - 238,054,846 (-)NCBI
RefSeq Acc Id: XM_063282240   ⟹   XP_063138310
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,009,403 - 238,054,846 (-)NCBI
RefSeq Acc Id: XM_063282241   ⟹   XP_063138311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82238,009,403 - 238,054,846 (-)NCBI
RefSeq Acc Id: NP_001014199   ⟸   NM_001014177
- UniProtKB: Q6AY22 (UniProtKB/Swiss-Prot),   A6HWD8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021063   ⟸   ENSRNOT00000021063
RefSeq Acc Id: XP_038958661   ⟸   XM_039102733
- Peptide Label: isoform X6
- UniProtKB: A6HWD8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958662   ⟸   XM_039102734
- Peptide Label: isoform X8
- UniProtKB: A6HWD8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958659   ⟸   XM_039102731
- Peptide Label: isoform X2
- UniProtKB: A6HWD8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958660   ⟸   XM_039102732
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AHH4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000093363   ⟸   ENSRNOT00000095066
RefSeq Acc Id: XP_063138311   ⟸   XM_063282241
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063138310   ⟸   XM_063282240
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063138309   ⟸   XM_063282239
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063138308   ⟸   XM_063282238
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063138307   ⟸   XM_063282237
- Peptide Label: isoform X8
- UniProtKB: A6HWD8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138305   ⟸   XM_063282235
- Peptide Label: isoform X5
- UniProtKB: Q6AY22 (UniProtKB/Swiss-Prot),   A6HWD8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138304   ⟸   XM_063282234
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AHH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138306   ⟸   XM_063282236
- Peptide Label: isoform X7
- UniProtKB: A0A8I6AHH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138302   ⟸   XM_063282232
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AHH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138303   ⟸   XM_063282233
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AHH4 (UniProtKB/TrEMBL)
Protein Domains
Spermatogenesis-associated protein 1 C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AY22-F1-model_v2 AlphaFold Q6AY22 1-444 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691814
Promoter ID:EPDNEW_R2339
Type:initiation region
Name:Spata1_1
Description:spermatogenesis associated 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02252,359,828 - 252,359,888EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359500 AgrOrtholog
BioCyc Gene G2FUF-50901 BioCyc
Ensembl Genes ENSRNOG00000015678 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000021063 ENTREZGENE
  ENSRNOT00000021063.5 UniProtKB/Swiss-Prot
  ENSRNOT00000095066 ENTREZGENE
IMAGE_CLONE IMAGE:7132232 IMAGE-MGC_LOAD
InterPro SPAT1 UniProtKB/Swiss-Prot
  SPATA1_C UniProtKB/Swiss-Prot
KEGG Report rno:362056 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94297 IMAGE-MGC_LOAD
NCBI Gene 362056 ENTREZGENE
PANTHER PTHR14421 UniProtKB/Swiss-Prot
  SPERMATOGENESIS-ASSOCIATED PROTEIN 1 UniProtKB/Swiss-Prot
Pfam SPATA1_C UniProtKB/Swiss-Prot
PhenoGen Spata1 PhenoGen
RatGTEx ENSRNOG00000015678 RatGTEx
UniProt A0A8I6AHH4 ENTREZGENE, UniProtKB/TrEMBL
  A6HWD8 ENTREZGENE, UniProtKB/TrEMBL
  Q6AY22 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Spata1  spermatogenesis associated 1  LOC362056  similar to RIKEN cDNA 4921536I21  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 LOC362056  similar to RIKEN cDNA 4921536I21      Symbol and Name status set to provisional 70820 PROVISIONAL