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Gene: Cxxc5 (CXXC finger protein 5) Rattus norvegicus

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Symbol:

Cxxc5

Name:

CXXC finger protein 5

RGD ID:

1359466

Description:

Predicted to enable DNA-binding transcription factor binding activity; methyl-CpG binding activity; and zinc ion binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II and regulation of generation of precursor metabolites and energy. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human CXXC5 (CXXC finger protein 5); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CXXC finger 5; CXXC-type zinc finger protein 5; MGC94398

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CXXC5 (CXXC finger protein 5)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cxxc5 (CXXC finger 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cxxc5 (CXXC finger protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CXXC5 (CXXC finger protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CXXC5 (CXXC finger protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cxxc5 (CXXC finger protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CXXC5 (CXXC finger protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CXXC5 (CXXC finger protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cxxc5 (CXXC finger protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cxxc5 (CXXC finger protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CXXC5 (CXXC finger protein 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cxxc5 (CXXC finger 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cxxc5b (CXXC finger protein 5b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	cxxc5b (CXXC finger protein 5b)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	cxxc5a (CXXC finger protein 5a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	27,701,650 - 27,732,633 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	27,701,188 - 27,732,635 (+)	Ensembl				GRCr8
mRatBN7.2	18	27,427,591 - 27,458,579 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	27,427,230 - 27,458,673 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	18	27,582,720 - 27,585,975 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	28,344,663 - 28,347,916 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	27,679,547 - 27,682,800 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	28,626,386 - 28,656,916 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	28,653,592 - 28,656,937 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	18	28,337,800 - 28,368,326 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	28,484,230 - 28,487,485 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	27,186,377 - 27,189,632 (+)	NCBI		Celera
RGSC_v3.1	18	28,510,875 - 28,514,133 (+)	NCBI
Cytogenetic Map	18	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-epigallocatechin 3-gallate (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3H-1,2-dithiole-3-thione (EXP)

4,4'-sulfonyldiphenol (EXP,ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

buta-1,3-diene (ISO)

Butylbenzyl phthalate (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

cocaine (EXP)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

DDE (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP,ISO)

disodium selenite (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

Enterolactone (ISO)

entinostat (ISO)

epoxiconazole (ISO)

ethanol (ISO)

flutamide (EXP)

gallic acid (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

isobutanol (ISO)

isoprenaline (ISO)

leflunomide (ISO)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

menadione (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

nefazodone (EXP)

nimesulide (EXP)

nitrates (ISO)

okadaic acid (ISO)

panobinostat (ISO)

paracetamol (EXP,ISO)

pentachlorophenol (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP,ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (EXP,ISO)

potassium chromate (ISO)

progesterone (ISO)

propiconazole (ISO)

rac-lactic acid (ISO)

rotenone (EXP)

SB 431542 (ISO)

serpentine asbestos (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

Soman (EXP)

tamoxifen (ISO)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of transcription by RNA polymerase II (ISO,ISS)

positive regulation of canonical NF-kappaB signal transduction (ISO)

regulation of generation of precursor metabolites and energy (ISO)

Cellular Component

cytoplasm (IEA)

nucleoplasm (ISO)

nucleus (IBA,IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor binding (ISO,ISS)

metal ion binding (IEA)

methyl-CpG binding (IBA,ISO,ISS)

sequence-specific DNA binding (ISO,ISS)

zinc ion binding (IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	null	JRS Domain-based curation
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:8889548	PMID:12761501	PMID:19001364	PMID:23303788	PMID:29276034

Genomics

Comparative Map Data

Cxxc5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	27,701,650 - 27,732,633 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	27,701,188 - 27,732,635 (+)	Ensembl				GRCr8
mRatBN7.2	18	27,427,591 - 27,458,579 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	27,427,230 - 27,458,673 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	18	27,582,720 - 27,585,975 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	28,344,663 - 28,347,916 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	27,679,547 - 27,682,800 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	28,626,386 - 28,656,916 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	28,653,592 - 28,656,937 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	18	28,337,800 - 28,368,326 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	28,484,230 - 28,487,485 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	27,186,377 - 27,189,632 (+)	NCBI		Celera
RGSC_v3.1	18	28,510,875 - 28,514,133 (+)	NCBI
Cytogenetic Map	18	p11	NCBI

CXXC5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	139,647,299 - 139,683,882 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	139,646,375 - 139,683,882 (+)	Ensembl			hg38	GRCh38
GRCh37	5	139,026,884 - 139,063,467 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	139,008,485 - 139,042,864 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	5	139,008,129 - 139,043,649	NCBI
Celera	5	135,103,300 - 135,138,126 (+)	NCBI		Celera
Cytogenetic Map	5	q31.2	NCBI
HuRef	5	134,203,070 - 134,205,817 (+)	NCBI		HuRef
CHM1_1	5	138,460,905 - 138,495,726 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	140,172,362 - 140,208,961 (+)	NCBI		T2T-CHM13v2.0

Cxxc5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	35,962,432 - 35,994,746 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	35,962,450 - 35,994,741 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	18	35,829,379 - 35,861,693 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	35,829,397 - 35,861,688 (+)	Ensembl			mm10	GRCm38
MGSCv37	18	35,989,472 - 36,021,342 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	18	35,955,792 - 35,987,662 (+)	NCBI		MGSCv36	mm8
Celera	18	36,285,690 - 36,317,655 (+)	NCBI		Celera
Cytogenetic Map	18	B2	NCBI
cM Map	18	19.26	NCBI

Cxxc5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955418	929,444 - 965,894 (-)	Ensembl
ChiLan1.0	NW_004955418	932,198 - 965,894 (-)	NCBI	ChiLan1.0	ChiLan1.0

CXXC5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	134,910,339 - 134,946,091 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	133,050,167 - 133,085,644 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	135,015,148 - 135,050,736 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	141,136,202 - 141,171,158 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	141,152,849 - 141,171,158 (+)	Ensembl			panPan2	panpan1.1

CXXC5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	34,903,680 - 34,939,580 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	34,935,858 - 35,082,085 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	32,006,364 - 32,041,389 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	35,358,482 - 35,393,531 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	35,358,152 - 35,393,529 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	32,410,860 - 32,445,909 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	33,277,483 - 33,312,483 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	34,028,727 - 34,063,784 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cxxc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	152,871,858 - 152,904,304 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936531	8,736,292 - 8,738,636 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936531	8,707,201 - 8,739,647 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CXXC5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	141,480,390 - 141,514,320 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	141,480,992 - 141,514,327 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	147,313,731 - 147,321,659 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CXXC5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	42,301,042 - 42,336,328 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	42,332,793 - 42,337,343 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666034	35,550,113 - 35,586,024 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cxxc5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624743	32,450,819 - 32,486,293 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624743	32,450,612 - 32,485,249 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cxxc5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	15	8,517,711 - 8,548,880 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cxxc5
183 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	686
Count of miRNA genes:	271
Interacting mature miRNAs:	347
Transcripts:	ENSRNOT00000004958, ENSRNOT00000045795, ENSRNOT00000072822
Prediction methods:	Microtar, Miranda, Pita, Pita,Microtar, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331733	Bp233	Blood pressure QTL 233	3.97196		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	25071126	83910656	Rat
2301409	Cm70	Cardiac mass QTL 70		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	18	7065728	52065728	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	22015562	61600538	Rat
1331735	Rf44	Renal function QTL 44	2.981		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	18	15642280	31610627	Rat
61382	Bp46	Blood pressure QTL 46	18.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	12216684	31644508	Rat
2301413	Bp318	Blood pressure QTL 318		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	26822186	71822186	Rat
12904716	Am21	Aortic mass QTL 21		0.005	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	7065728	52065728	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	23494057	85487725	Rat
12904714	Cm131	Cardiac mass QTL 131		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	7065728	52065728	Rat
12904715	Cm132	Cardiac mass QTL 132		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	7065728	52065728	Rat
6903345	Bp349	Blood pressure QTL 349	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
12904668	Bw188	Body weight QTL 188		0.03	body mass (VT:0001259)	body weight (CMO:0000012)	18	26822186	71822186	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	15226101	42690662	Rat
12904669	Cm125	Cardiac mass QTL 125		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	26822186	71822186	Rat
6903347	Bp350	Blood pressure QTL 350	4.4		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	31610627	Rat
12904670	Cm126	Cardiac mass QTL 126		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	26822186	71822186	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5460455	42690191	Rat
6903349	Bp351	Blood pressure QTL 351	3.5		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
631509	Sald2	Serum aldosterone level QTL 2	2.9		blood aldosterone amount (VT:0005346)	serum aldosterone level (CMO:0000487)	18	26415821	71415821	Rat
6903351	Bp352	Blood pressure QTL 352	3.3		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	3917226	48917226	Rat
12904677	Kidm72	Kidney mass QTL 72		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	26822186	71822186	Rat
1331766	Bp236	Blood pressure QTL 236	3.022		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	31610627	Rat
12904673	Cm127	Cardiac mass QTL 127		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	26822186	71822186	Rat
12904675	Am19	Aortic mass QTL 19		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	26822186	71822186	Rat
631264	Scl22	Serum cholesterol level QTL 22	6.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	18	12216684	31644508	Rat
1331775	Bp235	Blood pressure QTL 235	3.201		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	15642280	31610627	Rat
2325839	Bp348	Blood pressure QTL 348		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	1	44930869	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	19553532	85493247	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	12066482	57066482	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	12066482	85493247	Rat
2312598	Bp340	Blood pressure QTL 340		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	3811902	30809809	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34566578	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4482648	49482648	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	54490981	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	12066482	85493247	Rat
11565454	Kidm59	Kidney mass QTL 59		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	7065728	52065728	Rat
1331754	Bp230	Blood pressure QTL 230	4.61609		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	15642280	86134022	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34566578	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	4307354	49307354	Rat

Markers in Region

RH128066

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	27,458,332 - 27,458,517 (+)	MAPPER	mRatBN7.2
mRatBN7.2	X	126,894,182 - 126,894,368 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	134,542,422 - 134,542,607	NCBI	Rnor6.0
Rnor_6.0	18	28,656,668 - 28,656,852	NCBI	Rnor6.0
Rnor_5.0	18	28,368,080 - 28,368,264	UniSTS	Rnor5.0
Rnor_5.0	X	134,621,146 - 134,621,331	UniSTS	Rnor5.0
RGSC_v3.4	X	134,068,071 - 134,068,256	UniSTS	RGSC3.4
RGSC_v3.4	18	28,487,245 - 28,487,429	UniSTS	RGSC3.4
Celera	18	27,189,392 - 27,189,576	UniSTS
Celera	X	125,851,863 - 125,852,048	UniSTS
Cytogenetic Map	18	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001007628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600900	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600901	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005496008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083622	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BE114271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DV723039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000045795 ⟹ ENSRNOP00000042976

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	27,701,587 - 27,731,846 (+)	Ensembl
mRatBN7.2 Ensembl	18	27,455,318 - 27,458,575 (+)	Ensembl
Rnor_6.0 Ensembl	18	28,653,653 - 28,656,910 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000085120 ⟹ ENSRNOP00000069122

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	18	28,653,592 - 28,656,937 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104184 ⟹ ENSRNOP00000094752

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	27,701,188 - 27,732,635 (+)	Ensembl
mRatBN7.2 Ensembl	18	27,427,230 - 27,458,673 (+)	Ensembl

RefSeq Acc Id:

NM_001007628 ⟹ NP_001007629

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,729,372 - 27,732,627 (+)	NCBI
mRatBN7.2	18	27,455,318 - 27,458,573 (+)	NCBI
Rnor_6.0	18	28,653,653 - 28,656,908 (+)	NCBI
Rnor_5.0	18	28,337,800 - 28,368,326 (+)	NCBI
RGSC_v3.4	18	28,484,230 - 28,487,485 (+)	RGD
Celera	18	27,186,377 - 27,189,632 (+)	RGD

Sequence:

show sequence

CCTGATCATGCGCCTACCCTGAGTGAGGCCCTCCAGGCATCTGTATTGTGGGCAGCCGGGCTAC
ACGCTCAACTCTGAGCCCCCAGCAGCAGTTTGCAGGCTCTCCCAGCAGCGGGGTCTGGGCCTCG
GCCCCACCATGTCGAGCCTCGGCGGTGGCTCCCAGGACGCCGGTGGCAGTAGCAGCAGCAGTAA
CACCAGTAGCAGCAGTGGCAGTGGCCAAAAGGCAGGAGGAACAGACAAAAGTGCCACGGTGGCT
GCCACGGCACCGGCCTCCGTGGCAGACGATGCCCCGCCCCCTGAGCGTCGGAACAAGAGTGGAA
TCATCAGTGAACCCCTCAACAAGAGCCTGCGTCGCTCCCGCCCACTCTCTCACTACTCCTCCTT
TGGTAGCAGTGGTGGCGCCGGAAGCATGATGGGAGGGGAGTCTGCTGACAAGGCTGCCGCAGCC
GCAGCCTCCCTATTGGCCAACGGTCATGACCTGGCTGCGGCCATGGCGGTGGACAAAAGCAACC
CTACCTCAAAGCACAAAAGTGGTGCTGTGGCCAGCCTGCTAAGCAAGGCAGAGCGGGCCACAGA
GCTGGCAGCCGAGGGACAGCTGACACTGCAGCAGTTCGCACAGTCCACGGAGATGCTAAAGCGA
GTGGTGCAGGAACACCTGCCACTGATGAGCGAGGCGGGTGCCGGCCTGCCCGACATGGAGGCTG
TGGCCGGCGCCGAAGCCCTCAATGGCCAGTCCGACTTCCCTTACCTGGGCGCTTTCCCCATCAA
TCCAGGCCTCTTCATCATGACCCCAGCCGGTGTGTTCCTGGCTGAGAGTGCGCTGCACATGGCT
GGCCTGGCCGAGTACCCCATGCAGGGAGAGCTGGCTTCTGCCATCAGCTCGGGCAAGAAGAAGC
GGAAACGCTGCGGCATGTGTGCGCCCTGCCGGCGGCGCATCAACTGCGAGCAGTGCAGCAGTTG
TAGGAACCGAAAGACTGGCCATCAGATTTGCAAATTCAGAAAGTGTGAAGAACTCAAAAAGAAG
CCTTCCGCTGCTCTGGAGAAGGTGATGCTTCCGTCGGGAGCTGCCTTCCGGTGGTTTCAGTGAT
TTCAGTGACGGCCGGGAACCCAAAGCTGCCCTCTCCGTGCAATGTCACAGCCCGCGTGGTCTCC
GGCAAGGGATTCGGGCGAAGACAAACGGATGCACCCGTCTTTAGAACCAAAAATATTCTCTCAC
AGATTTCATTCCTGTTTTTATATATATATATTTTTTGTTGTCGTTTTAACATCTCCACGTCCCT
AGTATAAAAAGAAAAAGAAAAAAAATTTAACTGCTTTTTCAGAAGAACATCAACAAACAACAAG
AGAGGTAAAGACGAATCTATAAAGTACCGAGACTTCCTGGGCAAAGAATGGACAATCAGTCTCC
TTCCTGTGTCAATGTCAATGTTGTCTGTGCGGGAGATGCTGTTTTTGTGTAGAGAATGTAAATT
TTCTGTAACCTTTTGCAATCTAGTTACTAATAAGCACTACTGTAATTTAGCACAGTTTTAACTC
CACTCTGATTTTAACTTCCTTTGATTCTTTCCAACCATGAAATAGTGCATAGTTTGCCTGGAGA
ATCCACTCACGTTTATAAAGGAAATGTTGATCGCACCGTGTAGAAGCCCCCTCTGTATCCGTTC
ACGTGTGCAGAGCGGCCAGAGCCCACTGGGACTGGGAGTTCCTGACCCAGGCCCGACCATGTCG
CACCCATCGTCCCCTGACTGGGACGCCCCCGCCCCAACAGTGACGGATTTTTGGAGAGATGAAA
ATTCTATTCATTTGTTGATCCGCTGAGATCTGGGGAGCCCACATCTCAGTATTTCTGATCCTGG
CTACTTCCCCTAGAAAAAATGAGCCCTCTTTTTCCAGCCTTGCTCACAGCAGCAGAAGAAAGGG
CTTCTTTTCGTGGTCCCCTGCTGGTAGGGGTGGGTGCCCAGGGGCCCCCTGCCCGTGGCCAGCT
CCCTGCTGAGGAACATGCTGTTTGTATTGTTTTAGGAGACCAGGCTGTTTTGTGAATAAAACTG
AATGCATGTTTGTGTCAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017600900 ⟹ XP_017456389

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,702,095 - 27,732,633 (+)	NCBI
mRatBN7.2	18	27,428,004 - 27,458,573 (+)	NCBI
Rnor_6.0	18	28,626,386 - 28,656,916 (+)	NCBI

Sequence:

show sequence

CCTCCCTCTCCTCCCCCGGGGCTCCGGCGCGGCCGGGGCCGGAGTTCGCCGCAAGTCCGCGGAA
AGTTTGGCGGCGCGGGTTCCCCCGAAGTTCAGACCCAGAGAGGCGTTCACTGGCCCAAGGTGAC
ACAGACCATCCATCCTTCCCTCTATACCCGTGTGGAGCCAGTATGAAGAGAGTAAAGACGATTC
CACGTGGACACCTGATCATGCGCCTACCCTGAGTGAGGCCCTCCAGGCATCTGTATTGTGGGCA
GCCGGGCTACACGCTCAACTCTGAGCCCCCAGCAGCAGTTTGCAGGCTCTCCCAGCAGCGGGGT
CTGGGCCTCGGCCCCACCATGTCGAGCCTCGGCGGTGGCTCCCAGGACGCCGGTGGCAGTAGCA
GCAGCAGTAACACCAGTAGCAGCAGTGGCAGTGGCCAAAAGGCAGGAGGAACAGACAAAAGTGC
CACGGTGGCTGCCACGGCACCGGCCTCCGTGGCAGACGATGCCCCGCCCCCTGAGCGTCGGAAC
AAGAGTGGAATCATCAGTGAACCCCTCAACAAGAGCCTGCGTCGCTCCCGCCCACTCTCTCACT
ACTCCTCCTTTGGTAGCAGTGGTGGCGCCGGAAGCATGATGGGAGGGGAGTCTGCTGACAAGGC
TGCCGCAGCCGCAGCCTCCCTATTGGCCAACGGTCATGACCTGGCTGCGGCCATGGCGGTGGAC
AAAAGCAACCCTACCTCAAAGCACAAAAGTGGTGCTGTGGCCAGCCTGCTAAGCAAGGCAGAGC
GGGCCACAGAGCTGGCAGCCGAGGGACAGCTGACACTGCAGCAGTTCGCACAGTCCACGGAGAT
GCTAAAGCGAGTGGTGCAGGAACACCTGCCACTGATGAGCGAGGCGGGTGCCGGCCTGCCCGAC
ATGGAGGCTGTGGCCGGCGCCGAAGCCCTCAATGGCCAGTCCGACTTCCCTTACCTGGGCGCTT
TCCCCATCAATCCAGGCCTCTTCATCATGACCCCAGCCGGTGTGTTCCTGGCTGAGAGTGCGCT
GCACATGGCTGGCCTGGCCGAGTACCCCATGCAGGGAGAGCTGGCTTCTGCCATCAGCTCGGGC
AAGAAGAAGCGGAAACGCTGCGGCATGTGTGCGCCCTGCCGGCGGCGCATCAACTGCGAGCAGT
GCAGCAGTTGTAGGAACCGAAAGACTGGCCATCAGATTTGCAAATTCAGAAAGTGTGAAGAACT
CAAAAAGAAGCCTTCCGCTGCTCTGGAGAAGGTGATGCTTCCGTCGGGAGCTGCCTTCCGGTGG
TTTCAGTGATTTCAGTGACGGCCGGGAACCCAAAGCTGCCCTCTCCGTGCAATGTCACAGCCCG
CGTGGTCTCCGGCAAGGGATTCGGGCGAAGACAAACGGATGCACCCGTCTTTAGAACCAAAAAT
ATTCTCTCACAGATTTCATTCCTGTTTTTATATATATATATTTTTTGTTGTCGTTTTAACATCT
CCACGTCCCTAGTATAAAAAGAAAAAGAAAAAAAATTTAACTGCTTTTTCAGAAGAACATCAAC
AAACAACAAGAGAGGTAAAGACGAATCTATAAAGTACCGAGACTTCCTGGGCAAAGAATGGACA
ATCAGTCTCCTTCCTGTGTCAATGTCAATGTTGTCTGTGCGGGAGATGCTGTTTTTGTGTAGAG
AATGTAAATTTTCTGTAACCTTTTGCAATCTAGTTACTAATAAGCACTACTGTAATTTAGCACA
GTTTTAACTCCACTCTGATTTTAACTTCCTTTGATTCTTTCCAACCATGAAATAGTGCATAGTT
TGCCTGGAGAATCCACTCACGTTTATAAAGGAAATGTTGATCGCACCGTGTAGAAGCCCCCTCT
GTATCCGTTCACGTGTGCAGAGCGGCCAGAGCCCACTGGGACTGGGAGTTCCTGACCCAGGCCC
GACCATGTCGCACCCATCGTCCCCTGACTGGGACGCCCCCGCCCCAACAGTGACGGATTTTTGG
AGAGATGAAAATTCTATTCATTTGTTGATCCGCTGAGATCTGGGGAGCCCACATCTCAGTATTT
CTGATCCTGGCTACTTCCCCTAGAAAAAATGAGCCCTCTTTTTCCAGCCTTGCTCACAGCAGCA
GAAGAAAGGGCTTCTTTTCGTGGTCCCCTGCTGGTAGGGGTGGGTGCCCAGGGGCCCCCTGCCC
GTGGCCAGCTCCCTGCTGAGGAACATGCTGTTTGTATTGTTTTAGGAGACCAGGCTGTTTTGTG
AATAAAACTGAATGCATGTTTGTGTCATGATAACA

hide sequence

RefSeq Acc Id:

XM_017600902 ⟹ XP_017456391

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,702,108 - 27,732,633 (+)	NCBI
mRatBN7.2	18	27,428,004 - 27,458,573 (+)	NCBI
Rnor_6.0	18	28,626,386 - 28,656,908 (+)	NCBI

Sequence:

show sequence

CCTCCCTCTCCTCCCCCGGGGCTCCGGCGCGGCCGGGGCCGGAGTTCGCCGCAAGTCCGCGGAA
AGTTTGGCGGCGCGGGTTCCCCCGAAGTTCAGACCCAGAGAGGCGTTCACTGGCCCAAGGTGAC
ACAGACCATCCATCCTTCCCTCTATACCCGTGTGGAGCCAGTATGAAGAGTACACCCAGGGTCA
CTGGTGCCAAGAGGGATCCCTGGTCTCCGAGGAAGAGGGTCTGGAAAGATGGTCTAGGCTGGCC
TGTTGGAGAGTAAAGACGATTCCACGTGGACACCTGATCATGCGCCTACCCTGAGTGAGGCCCT
CCAGGCATCTGTATTGTGGGCAGCCGGGCTACACGCTCAACTCTGAGCCCCCAGCAGCAGTTTG
CAGGCTCTCCCAGCAGCGGGGTCTGGGCCTCGGCCCCACCATGTCGAGCCTCGGCGGTGGCTCC
CAGGACGCCGGTGGCAGTAGCAGCAGCAGTAACACCAGTAGCAGCAGTGGCAGTGGCCAAAAGG
CAGGAGGAACAGACAAAAGTGCCACGGTGGCTGCCACGGCACCGGCCTCCGTGGCAGACGATGC
CCCGCCCCCTGAGCGTCGGAACAAGAGTGGAATCATCAGTGAACCCCTCAACAAGAGCCTGCGT
CGCTCCCGCCCACTCTCTCACTACTCCTCCTTTGGTAGCAGTGGTGGCGCCGGAAGCATGATGG
GAGGGGAGTCTGCTGACAAGGCTGCCGCAGCCGCAGCCTCCCTATTGGCCAACGGTCATGACCT
GGCTGCGGCCATGGCGGTGGACAAAAGCAACCCTACCTCAAAGCACAAAAGTGGTGCTGTGGCC
AGCCTGCTAAGCAAGGCAGAGCGGGCCACAGAGCTGGCAGCCGAGGGACAGCTGACACTGCAGC
AGTTCGCACAGTCCACGGAGATGCTAAAGCGAGTGGTGCAGGAACACCTGCCACTGATGAGCGA
GGCGGGTGCCGGCCTGCCCGACATGGAGGCTGTGGCCGGCGCCGAAGCCCTCAATGGCCAGTCC
GACTTCCCTTACCTGGGCGCTTTCCCCATCAATCCAGGCCTCTTCATCATGACCCCAGCCGGTG
TGTTCCTGGCTGAGAGTGCGCTGCACATGGCTGGCCTGGCCGAGTACCCCATGCAGGGAGAGCT
GGCTTCTGCCATCAGCTCGGGCAAGAAGAAGCGGAAACGCTGCGGCATGTGTGCGCCCTGCCGG
CGGCGCATCAACTGCGAGCAGTGCAGCAGTTGTAGGAACCGAAAGACTGGCCATCAGATTTGCA
AATTCAGAAAGTGTGAAGAACTCAAAAAGAAGCCTTCCGCTGCTCTGGAGAAGGTGATGCTTCC
GTCGGGAGCTGCCTTCCGGTGGTTTCAGTGATTTCAGTGACGGCCGGGAACCCAAAGCTGCCCT
CTCCGTGCAATGTCACAGCCCGCGTGGTCTCCGGCAAGGGATTCGGGCGAAGACAAACGGATGC
ACCCGTCTTTAGAACCAAAAATATTCTCTCACAGATTTCATTCCTGTTTTTATATATATATATT
TTTTGTTGTCGTTTTAACATCTCCACGTCCCTAGTATAAAAAGAAAAAGAAAAAAAATTTAACT
GCTTTTTCAGAAGAACATCAACAAACAACAAGAGAGGTAAAGACGAATCTATAAAGTACCGAGA
CTTCCTGGGCAAAGAATGGACAATCAGTCTCCTTCCTGTGTCAATGTCAATGTTGTCTGTGCGG
GAGATGCTGTTTTTGTGTAGAGAATGTAAATTTTCTGTAACCTTTTGCAATCTAGTTACTAATA
AGCACTACTGTAATTTAGCACAGTTTTAACTCCACTCTGATTTTAACTTCCTTTGATTCTTTCC
AACCATGAAATAGTGCATAGTTTGCCTGGAGAATCCACTCACGTTTATAAAGGAAATGTTGATC
GCACCGTGTAGAAGCCCCCTCTGTATCCGTTCACGTGTGCAGAGCGGCCAGAGCCCACTGGGAC
TGGGAGTTCCTGACCCAGGCCCGACCATGTCGCACCCATCGTCCCCTGACTGGGACGCCCCCGC
CCCAACAGTGACGGATTTTTGGAGAGATGAAAATTCTATTCATTTGTTGATCCGCTGAGATCTG
GGGAGCCCACATCTCAGTATTTCTGATCCTGGCTACTTCCCCTAGAAAAAATGAGCCCTCTTTT
TCCAGCCTTGCTCACAGCAGCAGAAGAAAGGGCTTCTTTTCGTGGTCCCCTGCTGGTAGGGGTG
GGTGCCCAGGGGCCCCCTGCCCGTGGCCAGCTCCCTGCTGAGGAACATGCTGTTTGTATTGTTT
TAGGAGACCAGGCTGTTTTGTGAATAAAACTGAATGCATGTTTGTGTCA

hide sequence

RefSeq Acc Id:

XM_017600903 ⟹ XP_017456392

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,719,604 - 27,732,633 (+)	NCBI
mRatBN7.2	18	27,449,804 - 27,458,573 (+)	NCBI
Rnor_6.0	18	28,649,491 - 28,656,908 (+)	NCBI

Sequence:

show sequence

AAAGAAACCCTATCTCAAAAAACCAAAAAGAAAAAAAAATTATTGAACTAGGGCCAGGAATGGT
AGCCAACACCCATAACCCCAGTATTTAGGAGGCTAAGGTTGCTGCCCCGCCCCAACACACACAC
CTAAGAAAAAGCACTGAATCGAATTGTAAATGTCCTGTCCTTGACCTCAAGACTGTGGTTGTGA
CCCGGCAAAGGTCATCCATACCTGGTGTGTCCTGGTAATGACTCCCTATCCTTTACCTGACAGC
CTCTTCCTCCAAGAAGGCCCCCAGCCTCACTGGTGACTTCCACCAGCCCAGGTCTGAGGCACTC
GTGCAGGGAGGGTATGTGGACGTCCTCCTTGCCCCTCCCGCCATAGTAACACAGGGCATTAGGA
GGAAGAGTACTGCTAAACGTTTAGATGGAGCTGTAGGCCTCCTAGGAACACAGAGCACCAGTCC
CTCCCAGGACATAAGCTCCTCCCCCATGCAGTCAGGCTTTTCTGTGGCTGAGGGTGGGGTGAGG
CCATCACCACTACCTCCGGTGACCTCATTGCCAGCTGGCATTATGATGTCACCGGCCTAGCATT
CTGAGTTCCTGCATGTGTATCTCTAAGCCTCCAGGTGGGGCACTCCCCTGGGGGCCCGTGACAG
CTCACCCCTGACCAGGAAGAAGTGACAGGCATGAGTAAAGACGATTCCACGTGGACACCTGATC
ATGCGCCTACCCTGAGTGAGGCCCTCCAGGCATCTGTATTGTGGGCAGCCGGGCTACACGCTCA
ACTCTGAGCCCCCAGCAGCAGTTTGCAGGCTCTCCCAGCAGCGGGGTCTGGGCCTCGGCCCCAC
CATGTCGAGCCTCGGCGGTGGCTCCCAGGACGCCGGTGGCAGTAGCAGCAGCAGTAACACCAGT
AGCAGCAGTGGCAGTGGCCAAAAGGCAGGAGGAACAGACAAAAGTGCCACGGTGGCTGCCACGG
CACCGGCCTCCGTGGCAGACGATGCCCCGCCCCCTGAGCGTCGGAACAAGAGTGGAATCATCAG
TGAACCCCTCAACAAGAGCCTGCGTCGCTCCCGCCCACTCTCTCACTACTCCTCCTTTGGTAGC
AGTGGTGGCGCCGGAAGCATGATGGGAGGGGAGTCTGCTGACAAGGCTGCCGCAGCCGCAGCCT
CCCTATTGGCCAACGGTCATGACCTGGCTGCGGCCATGGCGGTGGACAAAAGCAACCCTACCTC
AAAGCACAAAAGTGGTGCTGTGGCCAGCCTGCTAAGCAAGGCAGAGCGGGCCACAGAGCTGGCA
GCCGAGGGACAGCTGACACTGCAGCAGTTCGCACAGTCCACGGAGATGCTAAAGCGAGTGGTGC
AGGAACACCTGCCACTGATGAGCGAGGCGGGTGCCGGCCTGCCCGACATGGAGGCTGTGGCCGG
CGCCGAAGCCCTCAATGGCCAGTCCGACTTCCCTTACCTGGGCGCTTTCCCCATCAATCCAGGC
CTCTTCATCATGACCCCAGCCGGTGTGTTCCTGGCTGAGAGTGCGCTGCACATGGCTGGCCTGG
CCGAGTACCCCATGCAGGGAGAGCTGGCTTCTGCCATCAGCTCGGGCAAGAAGAAGCGGAAACG
CTGCGGCATGTGTGCGCCCTGCCGGCGGCGCATCAACTGCGAGCAGTGCAGCAGTTGTAGGAAC
CGAAAGACTGGCCATCAGATTTGCAAATTCAGAAAGTGTGAAGAACTCAAAAAGAAGCCTTCCG
CTGCTCTGGAGAAGGTGATGCTTCCGTCGGGAGCTGCCTTCCGGTGGTTTCAGTGATTTCAGTG
ACGGCCGGGAACCCAAAGCTGCCCTCTCCGTGCAATGTCACAGCCCGCGTGGTCTCCGGCAAGG
GATTCGGGCGAAGACAAACGGATGCACCCGTCTTTAGAACCAAAAATATTCTCTCACAGATTTC
ATTCCTGTTTTTATATATATATATTTTTTGTTGTCGTTTTAACATCTCCACGTCCCTAGTATAA
AAAGAAAAAGAAAAAAAATTTAACTGCTTTTTCAGAAGAACATCAACAAACAACAAGAGAGGTA
AAGACGAATCTATAAAGTACCGAGACTTCCTGGGCAAAGAATGGACAATCAGTCTCCTTCCTGT
GTCAATGTCAATGTTGTCTGTGCGGGAGATGCTGTTTTTGTGTAGAGAATGTAAATTTTCTGTA
ACCTTTTGCAATCTAGTTACTAATAAGCACTACTGTAATTTAGCACAGTTTTAACTCCACTCTG
ATTTTAACTTCCTTTGATTCTTTCCAACCATGAAATAGTGCATAGTTTGCCTGGAGAATCCACT
CACGTTTATAAAGGAAATGTTGATCGCACCGTGTAGAAGCCCCCTCTGTATCCGTTCACGTGTG
CAGAGCGGCCAGAGCCCACTGGGACTGGGAGTTCCTGACCCAGGCCCGACCATGTCGCACCCAT
CGTCCCCTGACTGGGACGCCCCCGCCCCAACAGTGACGGATTTTTGGAGAGATGAAAATTCTAT
TCATTTGTTGATCCGCTGAGATCTGGGGAGCCCACATCTCAGTATTTCTGATCCTGGCTACTTC
CCCTAGAAAAAATGAGCCCTCTTTTTCCAGCCTTGCTCACAGCAGCAGAAGAAAGGGCTTCTTT
TCGTGGTCCCCTGCTGGTAGGGGTGGGTGCCCAGGGGCCCCCTGCCCGTGGCCAGCTCCCTGCT
GAGGAACATGCTGTTTGTATTGTTTTAGGAGACCAGGCTGTTTTGTGAATAAAACTGAATGCAT
GTTTGTGTCA

hide sequence

RefSeq Acc Id:

XM_017600904 ⟹ XP_017456393

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,702,073 - 27,732,633 (+)	NCBI
mRatBN7.2	18	27,428,031 - 27,458,573 (+)	NCBI
Rnor_6.0	18	28,626,389 - 28,656,908 (+)	NCBI

Sequence:

show sequence

CCCTCTCCTCCCCCGGGGCTCCGGCGCGGCCGGGGCCGGAGTTCGCCGCAAGTCCGCGGAAAGT
TTGGCGGCGCGGGTTCCCCCGAAGTTCAGAGTAAAGACGATTCCACGTGGACACCTGATCATGC
GCCTACCCTGAGTGAGGCCCTCCAGGCATCTGTATTGTGGGCAGCCGGGCTACACGCTCAACTC
TGAGCCCCCAGCAGCAGTTTGCAGGCTCTCCCAGCAGCGGGGTCTGGGCCTCGGCCCCACCATG
TCGAGCCTCGGCGGTGGCTCCCAGGACGCCGGTGGCAGTAGCAGCAGCAGTAACACCAGTAGCA
GCAGTGGCAGTGGCCAAAAGGCAGGAGGAACAGACAAAAGTGCCACGGTGGCTGCCACGGCACC
GGCCTCCGTGGCAGACGATGCCCCGCCCCCTGAGCGTCGGAACAAGAGTGGAATCATCAGTGAA
CCCCTCAACAAGAGCCTGCGTCGCTCCCGCCCACTCTCTCACTACTCCTCCTTTGGTAGCAGTG
GTGGCGCCGGAAGCATGATGGGAGGGGAGTCTGCTGACAAGGCTGCCGCAGCCGCAGCCTCCCT
ATTGGCCAACGGTCATGACCTGGCTGCGGCCATGGCGGTGGACAAAAGCAACCCTACCTCAAAG
CACAAAAGTGGTGCTGTGGCCAGCCTGCTAAGCAAGGCAGAGCGGGCCACAGAGCTGGCAGCCG
AGGGACAGCTGACACTGCAGCAGTTCGCACAGTCCACGGAGATGCTAAAGCGAGTGGTGCAGGA
ACACCTGCCACTGATGAGCGAGGCGGGTGCCGGCCTGCCCGACATGGAGGCTGTGGCCGGCGCC
GAAGCCCTCAATGGCCAGTCCGACTTCCCTTACCTGGGCGCTTTCCCCATCAATCCAGGCCTCT
TCATCATGACCCCAGCCGGTGTGTTCCTGGCTGAGAGTGCGCTGCACATGGCTGGCCTGGCCGA
GTACCCCATGCAGGGAGAGCTGGCTTCTGCCATCAGCTCGGGCAAGAAGAAGCGGAAACGCTGC
GGCATGTGTGCGCCCTGCCGGCGGCGCATCAACTGCGAGCAGTGCAGCAGTTGTAGGAACCGAA
AGACTGGCCATCAGATTTGCAAATTCAGAAAGTGTGAAGAACTCAAAAAGAAGCCTTCCGCTGC
TCTGGAGAAGGTGATGCTTCCGTCGGGAGCTGCCTTCCGGTGGTTTCAGTGATTTCAGTGACGG
CCGGGAACCCAAAGCTGCCCTCTCCGTGCAATGTCACAGCCCGCGTGGTCTCCGGCAAGGGATT
CGGGCGAAGACAAACGGATGCACCCGTCTTTAGAACCAAAAATATTCTCTCACAGATTTCATTC
CTGTTTTTATATATATATATTTTTTGTTGTCGTTTTAACATCTCCACGTCCCTAGTATAAAAAG
AAAAAGAAAAAAAATTTAACTGCTTTTTCAGAAGAACATCAACAAACAACAAGAGAGGTAAAGA
CGAATCTATAAAGTACCGAGACTTCCTGGGCAAAGAATGGACAATCAGTCTCCTTCCTGTGTCA
ATGTCAATGTTGTCTGTGCGGGAGATGCTGTTTTTGTGTAGAGAATGTAAATTTTCTGTAACCT
TTTGCAATCTAGTTACTAATAAGCACTACTGTAATTTAGCACAGTTTTAACTCCACTCTGATTT
TAACTTCCTTTGATTCTTTCCAACCATGAAATAGTGCATAGTTTGCCTGGAGAATCCACTCACG
TTTATAAAGGAAATGTTGATCGCACCGTGTAGAAGCCCCCTCTGTATCCGTTCACGTGTGCAGA
GCGGCCAGAGCCCACTGGGACTGGGAGTTCCTGACCCAGGCCCGACCATGTCGCACCCATCGTC
CCCTGACTGGGACGCCCCCGCCCCAACAGTGACGGATTTTTGGAGAGATGAAAATTCTATTCAT
TTGTTGATCCGCTGAGATCTGGGGAGCCCACATCTCAGTATTTCTGATCCTGGCTACTTCCCCT
AGAAAAAATGAGCCCTCTTTTTCCAGCCTTGCTCACAGCAGCAGAAGAAAGGGCTTCTTTTCGT
GGTCCCCTGCTGGTAGGGGTGGGTGCCCAGGGGCCCCCTGCCCGTGGCCAGCTCCCTGCTGAGG
AACATGCTGTTTGTATTGTTTTAGGAGACCAGGCTGTTTTGTGAATAAAACTGAATGCATGTTT
GTGTCA

hide sequence

RefSeq Acc Id:

XM_039096711 ⟹ XP_038952639

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,701,904 - 27,732,633 (+)	NCBI
mRatBN7.2	18	27,427,845 - 27,458,579 (+)	NCBI

RefSeq Acc Id:

XM_039096712 ⟹ XP_038952640

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,701,904 - 27,732,633 (+)	NCBI
mRatBN7.2	18	27,427,845 - 27,458,573 (+)	NCBI

RefSeq Acc Id:

XM_039096713 ⟹ XP_038952641

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,701,651 - 27,732,633 (+)	NCBI
mRatBN7.2	18	27,427,591 - 27,458,573 (+)	NCBI

RefSeq Acc Id:

XM_039096714 ⟹ XP_038952642

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,701,903 - 27,732,633 (+)	NCBI
mRatBN7.2	18	27,427,852 - 27,458,573 (+)	NCBI

RefSeq Acc Id:

XM_039096715 ⟹ XP_038952643

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,701,651 - 27,732,633 (+)	NCBI
mRatBN7.2	18	27,427,591 - 27,458,573 (+)	NCBI

RefSeq Acc Id:

XM_039096716 ⟹ XP_038952644

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,701,650 - 27,732,633 (+)	NCBI
mRatBN7.2	18	27,427,599 - 27,458,573 (+)	NCBI

RefSeq Acc Id:

XM_063277215 ⟹ XP_063133285

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,719,604 - 27,732,633 (+)	NCBI

RefSeq Acc Id:

XM_063277216 ⟹ XP_063133286

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,702,359 - 27,732,633 (+)	NCBI

RefSeq Acc Id:

XR_005496008

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,701,904 - 27,732,633 (+)	NCBI
mRatBN7.2	18	27,427,845 - 27,458,579 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001007629	(Get FASTA)	NCBI Sequence Viewer
	XP_017456389	(Get FASTA)	NCBI Sequence Viewer
	XP_017456391	(Get FASTA)	NCBI Sequence Viewer
	XP_017456392	(Get FASTA)	NCBI Sequence Viewer
	XP_017456393	(Get FASTA)	NCBI Sequence Viewer
	XP_038952639	(Get FASTA)	NCBI Sequence Viewer
	XP_038952640	(Get FASTA)	NCBI Sequence Viewer
	XP_038952641	(Get FASTA)	NCBI Sequence Viewer
	XP_038952642	(Get FASTA)	NCBI Sequence Viewer
	XP_038952643	(Get FASTA)	NCBI Sequence Viewer
	XP_038952644	(Get FASTA)	NCBI Sequence Viewer
	XP_063133285	(Get FASTA)	NCBI Sequence Viewer
	XP_063133286	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83622	(Get FASTA)	NCBI Sequence Viewer
	EDL76280	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000042976
	ENSRNOP00000042976.2
	ENSRNOP00000094752
GenBank Protein	Q5XIQ3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001007629 ⟸ NM_001007628

- UniProtKB:

Q5XIQ3 (UniProtKB/Swiss-Prot), A6J2Z8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSSLGGGSQDAGGSSSSSNTSSSSGSGQKAGGTDKSATVAATAPASVADDAPPPERRNKSGIIS
EPLNKSLRRSRPLSHYSSFGSSGGAGSMMGGESADKAAAAAASLLANGHDLAAAMAVDKSNPTS
KHKSGAVASLLSKAERATELAAEGQLTLQQFAQSTEMLKRVVQEHLPLMSEAGAGLPDMEAVAG
AEALNGQSDFPYLGAFPINPGLFIMTPAGVFLAESALHMAGLAEYPMQGELASAISSGKKKRKR
CGMCAPCRRRINCEQCSSCRNRKTGHQICKFRKCEELKKKPSAALEKVMLPSGAAFRWFQ

hide sequence

RefSeq Acc Id:	XP_017456389 ⟸ XM_017600900
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIQ3 (UniProtKB/Swiss-Prot), A6J2Z8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSLGGGSQDAGGSSSSSNTSSSSGSGQKAGGTDKSATVAATAPASVADDAPPPERRNKSGIIS EPLNKSLRRSRPLSHYSSFGSSGGAGSMMGGESADKAAAAAASLLANGHDLAAAMAVDKSNPTS KHKSGAVASLLSKAERATELAAEGQLTLQQFAQSTEMLKRVVQEHLPLMSEAGAGLPDMEAVAG AEALNGQSDFPYLGAFPINPGLFIMTPAGVFLAESALHMAGLAEYPMQGELASAISSGKKKRKR CGMCAPCRRRINCEQCSSCRNRKTGHQICKFRKCEELKKKPSAALEKVMLPSGAAFRWFQ hide sequence

RefSeq Acc Id:	XP_017456391 ⟸ XM_017600902
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIQ3 (UniProtKB/Swiss-Prot), A6J2Z8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSLGGGSQDAGGSSSSSNTSSSSGSGQKAGGTDKSATVAATAPASVADDAPPPERRNKSGIIS EPLNKSLRRSRPLSHYSSFGSSGGAGSMMGGESADKAAAAAASLLANGHDLAAAMAVDKSNPTS KHKSGAVASLLSKAERATELAAEGQLTLQQFAQSTEMLKRVVQEHLPLMSEAGAGLPDMEAVAG AEALNGQSDFPYLGAFPINPGLFIMTPAGVFLAESALHMAGLAEYPMQGELASAISSGKKKRKR CGMCAPCRRRINCEQCSSCRNRKTGHQICKFRKCEELKKKPSAALEKVMLPSGAAFRWFQ hide sequence

RefSeq Acc Id:	XP_017456393 ⟸ XM_017600904
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIQ3 (UniProtKB/Swiss-Prot), A6J2Z8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSLGGGSQDAGGSSSSSNTSSSSGSGQKAGGTDKSATVAATAPASVADDAPPPERRNKSGIIS EPLNKSLRRSRPLSHYSSFGSSGGAGSMMGGESADKAAAAAASLLANGHDLAAAMAVDKSNPTS KHKSGAVASLLSKAERATELAAEGQLTLQQFAQSTEMLKRVVQEHLPLMSEAGAGLPDMEAVAG AEALNGQSDFPYLGAFPINPGLFIMTPAGVFLAESALHMAGLAEYPMQGELASAISSGKKKRKR CGMCAPCRRRINCEQCSSCRNRKTGHQICKFRKCEELKKKPSAALEKVMLPSGAAFRWFQ hide sequence

RefSeq Acc Id:	XP_017456392 ⟸ XM_017600903
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIQ3 (UniProtKB/Swiss-Prot), A6J2Z8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSLGGGSQDAGGSSSSSNTSSSSGSGQKAGGTDKSATVAATAPASVADDAPPPERRNKSGIIS EPLNKSLRRSRPLSHYSSFGSSGGAGSMMGGESADKAAAAAASLLANGHDLAAAMAVDKSNPTS KHKSGAVASLLSKAERATELAAEGQLTLQQFAQSTEMLKRVVQEHLPLMSEAGAGLPDMEAVAG AEALNGQSDFPYLGAFPINPGLFIMTPAGVFLAESALHMAGLAEYPMQGELASAISSGKKKRKR CGMCAPCRRRINCEQCSSCRNRKTGHQICKFRKCEELKKKPSAALEKVMLPSGAAFRWFQ hide sequence

Ensembl Acc Id:

ENSRNOP00000042976 ⟸ ENSRNOT00000045795

Ensembl Acc Id:

ENSRNOP00000069122 ⟸ ENSRNOT00000085120

RefSeq Acc Id:	XP_038952643 ⟸ XM_039096715
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIQ3 (UniProtKB/Swiss-Prot), A6J2Z8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038952641 ⟸ XM_039096713
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIQ3 (UniProtKB/Swiss-Prot), A6J2Z8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038952644 ⟸ XM_039096716
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIQ3 (UniProtKB/Swiss-Prot), A6J2Z8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038952639 ⟸ XM_039096711
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIQ3 (UniProtKB/Swiss-Prot), A6J2Z8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038952640 ⟸ XM_039096712
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIQ3 (UniProtKB/Swiss-Prot), A6J2Z8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038952642 ⟸ XM_039096714
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIQ3 (UniProtKB/Swiss-Prot), A6J2Z8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000094752 ⟸ ENSRNOT00000104184

RefSeq Acc Id:	XP_063133286 ⟸ XM_063277216
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AID9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133285 ⟸ XM_063277215
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIQ3 (UniProtKB/Swiss-Prot), A6J2Z8 (UniProtKB/TrEMBL)

Protein Domains

CXXC-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XIQ3-F1-model_v2	AlphaFold	Q5XIQ3	1-316	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359466	AgrOrtholog
BioCyc Gene	G2FUF-7888	BioCyc
Ensembl Genes	ENSRNOG00000032878	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000045795	ENTREZGENE
	ENSRNOT00000045795.3	UniProtKB/Swiss-Prot
	ENSRNOT00000104184	ENTREZGENE
IMAGE_CLONE	IMAGE:7134100	IMAGE-MGC_LOAD
InterPro	CXXC4/CXXC5	UniProtKB/Swiss-Prot
	Znf_CXXC	UniProtKB/Swiss-Prot
KEGG Report	rno:291670	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94398	IMAGE-MGC_LOAD
NCBI Gene	291670	ENTREZGENE
PANTHER	CXXC-TYPE ZINC FINGER PROTEIN 5	UniProtKB/Swiss-Prot
	PTHR13419	UniProtKB/Swiss-Prot
Pfam	zf-CXXC	UniProtKB/Swiss-Prot
PhenoGen	Cxxc5	PhenoGen
PROSITE	ZF_CXXC	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000032878	RatGTEx
UniProt	A0A8I6AID9	ENTREZGENE, UniProtKB/TrEMBL
	A6J2Z8	ENTREZGENE, UniProtKB/TrEMBL
	CXXC5_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-08-02	Cxxc5	CXXC finger protein 5	Cxxc5	CXXC finger 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Cxxc5	CXXC finger 5			Symbol and Name status set to approved	1299863	APPROVED
2005-07-29	Cxxc5	CXXC finger 5			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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