Dync2i2 (dynein 2 intermediate chain 2) - Rat Genome Database

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Gene: Dync2i2 (dynein 2 intermediate chain 2) Rattus norvegicus
Analyze
Symbol: Dync2i2
Name: dynein 2 intermediate chain 2
RGD ID: 1359465
Description: Predicted to enable dynein heavy chain binding activity and dynein light chain binding activity. Predicted to be involved in cilium assembly and intraciliary retrograde transport. Predicted to be located in cytoskeleton and filopodium. Predicted to be part of cytoplasmic dynein complex. Predicted to be active in ciliary plasm. Human ortholog(s) of this gene implicated in short-rib thoracic dysplasia 11 with or without polydactyly. Orthologous to human DYNC2I2 (dynein 2 intermediate chain 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cytoplasmic dynein 2 intermediate chain 2; MGC95297; WD repeat domain 34; WD repeat-containing protein 34; Wdr34
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8333,703,882 - 33,719,960 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl333,703,882 - 33,719,960 (-)EnsemblGRCr8
mRatBN7.2313,306,039 - 13,322,121 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl313,306,039 - 13,322,121 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx316,380,386 - 16,396,488 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0324,965,345 - 24,981,447 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0323,216,070 - 23,232,168 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.038,599,251 - 8,615,329 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl38,599,148 - 8,615,532 (-)Ensemblrn6Rnor6.0
Rnor_5.0313,950,876 - 13,967,221 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.439,021,833 - 9,037,243 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera38,083,074 - 8,099,111 (-)NCBICelera
RGSC_v3.139,022,132 - 9,037,543 (-)NCBI
Cytogenetic Map3p12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
axoneme  (IEA,ISO)
centriole  (IEA,ISO)
centrosome  (IEA,ISO)
ciliary basal body  (IEA,ISO)
ciliary plasm  (IBA)
cilium  (IEA,ISO)
cytoplasm  (IEA,ISO)
cytoplasmic dynein complex  (IBA,IEA,ISO)
cytosol  (IEA,ISO)
filopodium  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. null JRS Domain-based curation
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:24183451   PMID:25205765   PMID:25294941   PMID:25830415  


Genomics

Comparative Map Data
Dync2i2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8333,703,882 - 33,719,960 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl333,703,882 - 33,719,960 (-)EnsemblGRCr8
mRatBN7.2313,306,039 - 13,322,121 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl313,306,039 - 13,322,121 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx316,380,386 - 16,396,488 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0324,965,345 - 24,981,447 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0323,216,070 - 23,232,168 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.038,599,251 - 8,615,329 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl38,599,148 - 8,615,532 (-)Ensemblrn6Rnor6.0
Rnor_5.0313,950,876 - 13,967,221 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.439,021,833 - 9,037,243 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera38,083,074 - 8,099,111 (-)NCBICelera
RGSC_v3.139,022,132 - 9,037,543 (-)NCBI
Cytogenetic Map3p12NCBI
DYNC2I2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389128,633,653 - 128,684,460 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9128,633,646 - 128,656,847 (-)Ensemblhg38GRCh38
GRCh379131,395,932 - 131,419,126 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369130,435,761 - 130,458,950 (-)NCBIBuild 36Build 36hg18NCBI36
Build 349128,475,493 - 128,498,620NCBI
Celera9102,046,739 - 102,069,942 (-)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9101,007,761 - 101,029,056 (-)NCBIHuRef
CHM1_19131,546,867 - 131,570,080 (-)NCBICHM1_1
T2T-CHM13v2.09140,840,521 - 140,889,219 (-)NCBIT2T-CHM13v2.0
Dync2i2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39229,921,563 - 29,938,891 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl229,921,558 - 29,938,893 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38230,031,551 - 30,048,879 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl230,031,546 - 30,048,881 (-)Ensemblmm10GRCm38
MGSCv37229,887,071 - 29,904,399 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36229,853,560 - 29,870,834 (-)NCBIMGSCv36mm8
Celera229,735,303 - 29,752,631 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.04NCBI
Dync2i2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555701,076,568 - 1,086,613 (-)Ensembl
ChiLan1.0NW_0049555701,076,498 - 1,086,629 (-)NCBIChiLan1.0ChiLan1.0
DYNC2I2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21110,694,048 - 10,718,344 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1910,696,398 - 10,720,696 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0999,755,972 - 99,780,279 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19128,422,958 - 128,447,444 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9128,423,053 - 128,447,387 (-)EnsemblpanPan2panpan1.1
DYNC2I2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1954,930,039 - 54,953,752 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl954,930,054 - 54,953,751 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha954,125,830 - 54,149,446 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0955,852,295 - 55,876,078 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl955,852,310 - 55,876,077 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1954,612,075 - 54,635,564 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0954,925,485 - 54,949,367 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0955,018,287 - 55,041,986 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dync2i2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947196,373,926 - 196,389,417 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648716,142,658 - 16,157,804 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648716,142,659 - 16,157,929 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DYNC2I2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1269,002,261 - 269,030,719 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11269,002,252 - 269,030,978 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21303,025,984 - 303,054,250 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DYNC2I2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,470,588 - 9,503,754 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl129,479,403 - 9,503,671 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660796,746,587 - 6,771,280 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dync2i2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247606,321,172 - 6,331,532 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247606,321,195 - 6,331,784 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Dync2i2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v156,685,750 - 6,701,516 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Dync2i2
60 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:116
Count of miRNA genes:102
Interacting mature miRNAs:104
Transcripts:ENSRNOT00000021132
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32905627547904329Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
8693641Alc30Alcohol consumption QTL 3020.739drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)33083238444921701Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3136721849Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)32905627547904329Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat

Markers in Region
RH133209  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2313,306,136 - 13,306,335 (+)MAPPERmRatBN7.2
Rnor_6.038,599,349 - 8,599,547NCBIRnor6.0
Rnor_5.0313,951,061 - 13,951,259UniSTSRnor5.0
RGSC_v3.439,021,922 - 9,022,120UniSTSRGSC3.4
Celera38,083,172 - 8,083,370UniSTS
RH 3.4 Map335.9UniSTS
Cytogenetic Map3p12UniSTS
RH134500  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2313,305,800 - 13,305,983 (+)MAPPERmRatBN7.2
Rnor_6.038,599,013 - 8,599,195NCBIRnor6.0
Rnor_5.0313,950,725 - 13,950,907UniSTSRnor5.0
RGSC_v3.439,021,586 - 9,021,768UniSTSRGSC3.4
Celera38,082,836 - 8,083,018UniSTS
Cytogenetic Map3p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 91 59 6 355 191 11 140 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000021132   ⟹   ENSRNOP00000021132
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl333,703,882 - 33,719,960 (-)Ensembl
mRatBN7.2 Ensembl313,306,039 - 13,322,121 (-)Ensembl
Rnor_6.0 Ensembl38,599,148 - 8,615,532 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093930   ⟹   ENSRNOP00000083424
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl313,306,039 - 13,318,013 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104198   ⟹   ENSRNOP00000090558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl313,306,039 - 13,313,493 (-)Ensembl
RefSeq Acc Id: NM_001005542   ⟹   NP_001005542
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8333,703,882 - 33,719,960 (-)NCBI
mRatBN7.2313,306,039 - 13,322,121 (-)NCBI
Rnor_6.038,599,251 - 8,615,329 (-)NCBI
RGSC_v3.439,021,833 - 9,037,243 (-)RGD
Celera38,083,074 - 8,099,111 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001005542 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH82103 (Get FASTA)   NCBI Sequence Viewer  
  EDL93353 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000021132
  ENSRNOP00000021132.6
RefSeq Acc Id: NP_001005542   ⟸   NM_001005542
- UniProtKB: A0A0G2QC64 (UniProtKB/TrEMBL),   A0A8I6AC17 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021132   ⟸   ENSRNOT00000021132
Ensembl Acc Id: ENSRNOP00000090558   ⟸   ENSRNOT00000104198
Ensembl Acc Id: ENSRNOP00000083424   ⟸   ENSRNOT00000093930

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2QC64-F1-model_v2 AlphaFold A0A0G2QC64 1-537 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359465 AgrOrtholog
BioCyc Gene G2FUF-50239 BioCyc
Ensembl Genes ENSRNOG00000015636 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021132 ENTREZGENE
  ENSRNOT00000021132.8 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7134619 IMAGE-MGC_LOAD
InterPro Dynein_IC UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report rno:296618 UniProtKB/TrEMBL
MGC_CLONE MGC:95297 IMAGE-MGC_LOAD
NCBI Gene 296618 ENTREZGENE
PANTHER CYTOPLASMIC DYNEIN 2 INTERMEDIATE CHAIN 2 UniProtKB/TrEMBL
  DYNEIN INTERMEDIATE CHAIN UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PhenoGen Dync2i2 PhenoGen
RatGTEx ENSRNOG00000015636 RatGTEx
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP WD40_like UniProtKB/TrEMBL
UniProt A0A0G2QC64 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AC17 ENTREZGENE
  Q66H05_RAT UniProtKB/TrEMBL
UniProt Secondary F1M793 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-05-22 Dync2i2  dynein 2 intermediate chain 2  Wdr34  WD repeat domain 34  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Wdr34  WD repeat domain 34      Symbol and Name status set to approved 1299863 APPROVED
2005-07-29 Wdr34  WD repeat domain 34      Symbol and Name status set to provisional 70820 PROVISIONAL