Noa1 (nitric oxide associated 1) - Rat Genome Database

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Gene: Noa1 (nitric oxide associated 1) Rattus norvegicus
Analyze
Symbol: Noa1
Name: nitric oxide associated 1
RGD ID: 1359460
Description: Predicted to enable GTP binding activity. Predicted to be involved in mitochondrial ribosome assembly and mitochondrion organization. Predicted to be located in matrix side of mitochondrial inner membrane. Orthologous to human NOA1 (nitric oxide associated 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC95260; MMR_HSR1 domain containing protein RGD1359460; nitric oxide-associated protein 1; RGD1359460; similar to hypothetical brain protein similar to X96994 BR-1 protein (Helix pomatia)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81431,189,570 - 31,205,600 (+)NCBIGRCr8
mRatBN7.21430,835,264 - 30,851,294 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1430,835,247 - 30,851,293 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1431,216,115 - 31,232,159 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01432,524,442 - 32,540,486 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01431,009,098 - 31,025,142 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01433,107,868 - 33,124,172 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1433,108,024 - 33,124,171 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01432,901,338 - 32,918,110 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41433,107,963 - 33,123,993 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11433,107,962 - 33,123,992 (+)NCBI
Celera1430,154,477 - 30,170,507 (+)NCBICelera
Cytogenetic Map14p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. null JRS Domain-based curation
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:16380119   PMID:18456285   PMID:18614015   PMID:19103604   PMID:21118999   PMID:22658674  


Genomics

Comparative Map Data
Noa1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81431,189,570 - 31,205,600 (+)NCBIGRCr8
mRatBN7.21430,835,264 - 30,851,294 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1430,835,247 - 30,851,293 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1431,216,115 - 31,232,159 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01432,524,442 - 32,540,486 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01431,009,098 - 31,025,142 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01433,107,868 - 33,124,172 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1433,108,024 - 33,124,171 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01432,901,338 - 32,918,110 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41433,107,963 - 33,123,993 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11433,107,962 - 33,123,992 (+)NCBI
Celera1430,154,477 - 30,170,507 (+)NCBICelera
Cytogenetic Map14p11NCBI
NOA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38456,963,350 - 56,977,606 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl456,963,350 - 56,977,606 (-)EnsemblGRCh38hg38GRCh38
GRCh37457,829,516 - 57,843,772 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36457,524,273 - 57,538,583 (-)NCBINCBI36Build 36hg18NCBI36
Build 34457,670,444 - 57,684,754NCBI
Celera455,335,470 - 55,349,777 (-)NCBICelera
Cytogenetic Map4q12NCBI
HuRef453,782,949 - 53,797,258 (-)NCBIHuRef
CHM1_1457,864,912 - 57,879,218 (-)NCBICHM1_1
T2T-CHM13v2.0460,454,802 - 60,469,054 (-)NCBIT2T-CHM13v2.0
Noa1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39577,442,016 - 77,458,276 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl577,442,029 - 77,457,931 (-)EnsemblGRCm39 Ensembl
GRCm38577,294,169 - 77,310,413 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl577,294,182 - 77,310,084 (-)EnsemblGRCm38mm10GRCm38
MGSCv37577,723,194 - 77,739,111 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36578,369,026 - 78,384,833 (-)NCBIMGSCv36mm8
Celera574,561,388 - 74,577,311 (-)NCBICelera
Cytogenetic Map5C3.3NCBI
cM Map541.64NCBI
Noa1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544714,151,241 - 14,164,856 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544714,151,193 - 14,164,969 (+)NCBIChiLan1.0ChiLan1.0
NOA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2372,797,710 - 72,815,870 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1473,003,153 - 73,021,301 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0466,940,529 - 66,954,998 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1473,515,058 - 73,528,368 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl473,515,058 - 73,528,368 (+)Ensemblpanpan1.1panPan2
NOA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11349,078,509 - 49,091,427 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1349,078,361 - 49,090,864 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1348,969,253 - 48,982,132 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01349,693,111 - 49,705,991 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1349,691,850 - 49,705,468 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11349,365,665 - 49,378,746 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01348,894,917 - 48,908,014 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01349,839,955 - 49,852,844 (-)NCBIUU_Cfam_GSD_1.0
Noa1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528527,225,204 - 27,240,382 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648219,055,213 - 19,073,258 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648219,057,360 - 19,073,031 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100621115
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl856,221,663 - 56,231,920 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1856,221,642 - 56,232,182 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2858,999,457 - 59,009,959 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103247084
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_023666128175,429 - 196,777 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Noa1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476112,430,935 - 12,446,408 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476112,430,403 - 12,445,931 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Noa1
56 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:208
Count of miRNA genes:134
Interacting mature miRNAs:152
Transcripts:ENSRNOT00000067650
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
2324617Coatc2Coat color QTL 20.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)143076702539153750Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141863134542337007Rat
7387267Uae42Urinary albumin excretion QTL 420.61urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)142216796767167967Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141487516830883947Rat

Markers in Region
AU022345  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21430,850,959 - 30,851,187 (+)MAPPERmRatBN7.2
Rnor_6.01433,123,836 - 33,124,063NCBIRnor6.0
Rnor_5.01432,917,774 - 32,918,001UniSTSRnor5.0
RGSC_v3.41433,123,659 - 33,123,886UniSTSRGSC3.4
Celera1430,170,173 - 30,170,400UniSTS
Cytogenetic Map14p11UniSTS
RH133432  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21430,850,947 - 30,851,143 (+)MAPPERmRatBN7.2
Rnor_6.01433,123,824 - 33,124,019NCBIRnor6.0
Rnor_5.01432,917,762 - 32,917,957UniSTSRnor5.0
RGSC_v3.41433,123,647 - 33,123,842UniSTSRGSC3.4
Celera1430,170,161 - 30,170,356UniSTS
Cytogenetic Map14p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000067650   ⟹   ENSRNOP00000061404
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1430,835,264 - 30,851,293 (+)Ensembl
Rnor_6.0 Ensembl1433,108,140 - 33,124,169 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077242   ⟹   ENSRNOP00000069109
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1430,835,247 - 30,851,201 (+)Ensembl
Rnor_6.0 Ensembl1433,108,218 - 33,117,945 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000090350   ⟹   ENSRNOP00000073624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1430,835,247 - 30,851,292 (+)Ensembl
Rnor_6.0 Ensembl1433,108,024 - 33,124,171 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102744   ⟹   ENSRNOP00000079492
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1430,835,247 - 30,844,478 (+)Ensembl
RefSeq Acc Id: NM_001006959   ⟹   NP_001006960
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,189,570 - 31,205,600 (+)NCBI
mRatBN7.21430,835,264 - 30,851,294 (+)NCBI
Rnor_6.01433,108,140 - 33,124,170 (+)NCBI
Rnor_5.01432,901,338 - 32,918,110 (+)NCBI
RGSC_v3.41433,107,963 - 33,123,993 (+)RGD
Celera1430,154,477 - 30,170,507 (+)RGD
Sequence:
RefSeq Acc Id: NM_001401447   ⟹   NP_001388376
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,189,570 - 31,205,600 (+)NCBI
mRatBN7.21430,835,264 - 30,851,294 (+)NCBI
RefSeq Acc Id: NP_001006960   ⟸   NM_001006959
- Peptide Label: isoform 2
- UniProtKB: Q5XHZ7 (UniProtKB/TrEMBL),   A0A0G2JUI4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069109   ⟸   ENSRNOT00000077242
Ensembl Acc Id: ENSRNOP00000061404   ⟸   ENSRNOT00000067650
Ensembl Acc Id: ENSRNOP00000073624   ⟸   ENSRNOT00000090350
Ensembl Acc Id: ENSRNOP00000079492   ⟸   ENSRNOT00000102744
RefSeq Acc Id: NP_001388376   ⟸   NM_001401447
- Peptide Label: isoform 1
- UniProtKB: A0A0G2K602 (UniProtKB/TrEMBL),   A6JCV1 (UniProtKB/TrEMBL)
Protein Domains
G   NOA1/YqeH-like C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K602-F1-model_v2 AlphaFold A0A0G2K602 1-694 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699267
Promoter ID:EPDNEW_R9791
Type:initiation region
Name:Noa1_1
Description:nitric oxide associated 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01433,108,207 - 33,108,267EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359460 AgrOrtholog
BioCyc Gene G2FUF-15991 BioCyc
Ensembl Genes ENSRNOG00000002055 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067650.3 UniProtKB/TrEMBL
  ENSRNOT00000077242.2 UniProtKB/TrEMBL
  ENSRNOT00000090350.2 UniProtKB/TrEMBL
  ENSRNOT00000102744.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7133605 IMAGE-MGC_LOAD
InterPro GTP_binding_domain UniProtKB/TrEMBL
  Mito_transl_resp_regulator UniProtKB/TrEMBL
  NOA1/YqeH-like_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report rno:289562 UniProtKB/TrEMBL
MGC_CLONE MGC:95260 IMAGE-MGC_LOAD
NCBI Gene 289562 ENTREZGENE
PANTHER NITRIC OXIDE-ASSOCIATED PROTEIN 1 UniProtKB/TrEMBL
  NITRIC OXIDE-ASSOCIATED PROTEIN 1 UniProtKB/TrEMBL
Pfam MMR_HSR1 UniProtKB/TrEMBL
  YqeH-like_C UniProtKB/TrEMBL
PhenoGen Noa1 PhenoGen
RatGTEx ENSRNOG00000002055 RatGTEx
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0G2JUI4 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K602 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G5E7_RAT UniProtKB/TrEMBL
  A6JCV1 ENTREZGENE, UniProtKB/TrEMBL
  Q5XHZ7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-12-06 Noa1  nitric oxide associated 1  RGD1359460  MMR_HSR1 domain containing protein RGD1359460  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 RGD1359460  MMR_HSR1 domain containing protein RGD1359460  MGC95260  similar to hypothetical brain protein similar to X96994 BR-1 protein (Helix pomatia)  Symbol and Name updated 1299863 APPROVED
2005-07-29 MGC95260  similar to hypothetical brain protein similar to X96994 BR-1 protein (Helix pomatia)      Symbol and Name status set to provisional 70820 PROVISIONAL