Rab1b-ps1 (RAB1B, member RAS oncogene family, pseudogene 1) - Rat Genome Database

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Gene: Rab1b-ps1 (RAB1B, member RAS oncogene family, pseudogene 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rab1b-ps1 (Ensembl: Rab1b)
Name: RAB1B, member RAS oncogene family, pseudogene 1 (Ensembl:RAB1B, member RAS oncogene family)
RGD ID: 1359415
Description: INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride; flutamide
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: LOC102555167; MGC105830; Rab1b; ras-related protein Rab-1B; ras-related protein Rab-1B-like; similar to Ras-related protein Rab-1B
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Rab1b  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X54,808,681 - 54,810,516 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX54,808,524 - 54,810,422 (+)EnsemblGRCr8
mRatBN7.2X50,857,911 - 50,859,746 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX50,857,916 - 50,859,762 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX52,187,600 - 52,189,435 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X55,688,012 - 55,689,847 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X53,318,985 - 53,320,820 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,480,828 - 220,491,456 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,480,834 - 220,491,469 (-)NCBIrn6Rnor6.0
Rnor_5.01227,411,882 - 227,422,542 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X73,108,011 - 73,109,857 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Cytogenetic MapXq21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:2493636   PMID:21873635  


Genomics

Variants

.
Variants in Rab1b-ps1
4 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X4493088389930883Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000042711   ⟹   ENSRNOP00000067788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX54,808,524 - 54,810,422 (+)Ensembl
mRatBN7.2 EnsemblX50,857,916 - 50,859,762 (+)Ensembl
Protein Sequences
GenBank Protein EDL96044 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000067788   ⟸   ENSRNOT00000042711

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-2337 BioCyc
Ensembl Genes ENSRNOG00000050510 Ensembl, ENTREZGENE
IMAGE_CLONE IMAGE:7108294 IMAGE-MGC_LOAD
MGC_CLONE MGC:105830 IMAGE-MGC_LOAD
NCBI Gene 361706 ENTREZGENE
PhenoGen Rab1b-ps1 PhenoGen
RatGTEx ENSRNOG00000050510 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Rab1b-ps1  RAB1B, member RAS oncogene family, pseudogene 1  LOC102555167  ras-related protein Rab-1B-like  Data merged from RGD:7593353 737654 PROVISIONAL
2013-12-18 LOC102555167  ras-related protein Rab-1B-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-11-24 Rab1b-ps1  RAB1B, member RAS oncogene family, pseudogene 1  Rab1bl  RAB1B-like, member RAS oncogene family  Symbol and Name updated 1299863 APPROVED
2008-11-24 Rab1bl  RAB1B-like, member RAS oncogene family  Rab1b  RAB1B, member RAS oncogene family  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-27 Rab1b  RAB1B, member RAS oncogene family  MGC105830  similar to Ras-related protein Rab-1B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 MGC105830  similar to Ras-related protein Rab-1B      Symbol and Name status set to provisional 70820 PROVISIONAL