Tmbim1 (transmembrane BAX inhibitor motif containing 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Tmbim1 (transmembrane BAX inhibitor motif containing 1) Rattus norvegicus
Analyze
Symbol: Tmbim1
Name: transmembrane BAX inhibitor motif containing 1
RGD ID: 1359409
Description: Predicted to enable calcium channel activity and death receptor binding activity. Predicted to be involved in several processes, including negative regulation of Fas signaling pathway; negative regulation of apoptotic process; and positive regulation of blood vessel remodeling. Predicted to be located in Golgi membrane; endosome membrane; and lysosomal membrane. Predicted to be active in Golgi apparatus; endoplasmic reticulum; and membrane. Orthologous to human TMBIM1 (transmembrane BAX inhibitor motif containing 1); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC94053; similar to RECS1; transmembrane BAX inhibitor motif-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8983,320,972 - 83,338,469 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl983,320,979 - 83,338,657 (-)EnsemblGRCr8
mRatBN7.2975,871,835 - 75,889,366 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl975,871,835 - 75,889,069 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx984,317,374 - 84,334,544 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0989,446,295 - 89,463,469 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0987,832,511 - 87,849,679 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0981,569,289 - 81,586,469 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl981,569,289 - 81,586,553 (-)Ensemblrn6Rnor6.0
Rnor_5.0981,335,836 - 81,353,016 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4973,614,825 - 73,632,005 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera973,448,320 - 73,465,500 (-)NCBICelera
RGSC_v3.1973,761,807 - 73,770,449 (-)NCBI
Cytogenetic Map9q33NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (EXP)
amphetamine  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
ciglitazone  (ISO)
clofibrate  (EXP)
clofibric acid  (EXP)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
diquat  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
endosulfan  (EXP)
ethyl methanesulfonate  (ISO)
fenamidone  (ISO)
formaldehyde  (ISO)
furan  (EXP)
inulin  (ISO)
isoprenaline  (ISO)
ivermectin  (ISO)
L-ethionine  (EXP)
leflunomide  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (EXP)
omeprazole  (EXP)
orphenadrine  (EXP)
oxaliplatin  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (EXP,ISO)
resveratrol  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
Soman  (EXP)
sulforaphane  (ISO)
temozolomide  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
triphenyl phosphate  (EXP,ISO)
triptonide  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
endosome membrane  (IEA,ISO)
Golgi apparatus  (IEA,ISO)
Golgi membrane  (IEA,ISO)
lysosomal membrane  (IEA,ISO)
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:16607040   PMID:16636500   PMID:17897319   PMID:19056867   PMID:21107705   PMID:23376485   PMID:23533145  


Genomics

Comparative Map Data
Tmbim1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8983,320,972 - 83,338,469 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl983,320,979 - 83,338,657 (-)EnsemblGRCr8
mRatBN7.2975,871,835 - 75,889,366 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl975,871,835 - 75,889,069 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx984,317,374 - 84,334,544 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0989,446,295 - 89,463,469 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0987,832,511 - 87,849,679 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0981,569,289 - 81,586,469 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl981,569,289 - 81,586,553 (-)Ensemblrn6Rnor6.0
Rnor_5.0981,335,836 - 81,353,016 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4973,614,825 - 73,632,005 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera973,448,320 - 73,465,500 (-)NCBICelera
RGSC_v3.1973,761,807 - 73,770,449 (-)NCBI
Cytogenetic Map9q33NCBI
TMBIM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,274,197 - 218,292,503 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2218,274,194 - 218,292,586 (-)Ensemblhg38GRCh38
GRCh372219,138,920 - 219,157,226 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362218,847,161 - 218,865,524 (-)NCBIBuild 36Build 36hg18NCBI36
Celera2212,905,492 - 212,923,864 (-)NCBICelera
Cytogenetic Map2q35ENTREZGENE
HuRef2210,992,006 - 211,010,384 (-)NCBIHuRef
CHM1_12219,145,398 - 219,163,764 (-)NCBICHM1_1
T2T-CHM13v2.02218,759,890 - 218,778,207 (-)NCBIT2T-CHM13v2.0
Tmbim1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,327,406 - 74,343,495 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,327,406 - 74,344,781 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38174,288,247 - 74,304,336 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,288,247 - 74,305,622 (-)Ensemblmm10GRCm38
MGSCv37174,334,821 - 74,350,910 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36174,221,461 - 74,237,367 (-)NCBIMGSCv36mm8
Celera174,849,600 - 74,865,677 (-)NCBICelera
Cytogenetic Map1C3NCBI
cM Map138.53NCBI
Tmbim1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545315,092,522 - 15,099,021 (+)Ensembl
ChiLan1.0NW_00495545315,083,179 - 15,100,197 (+)NCBIChiLan1.0ChiLan1.0
TMBIM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213120,906,392 - 120,924,762 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B120,921,356 - 120,939,734 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B105,533,578 - 105,551,969 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B224,131,476 - 224,149,669 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B224,131,478 - 224,143,170 (-)EnsemblpanPan2panpan1.1
TMBIM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13724,952,145 - 24,983,477 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3724,952,902 - 24,958,137 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3725,772,307 - 25,789,205 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03724,968,200 - 24,985,133 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3724,968,204 - 24,985,119 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13724,873,526 - 24,890,468 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03724,807,781 - 24,824,727 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03724,827,421 - 24,844,375 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tmbim1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303174,460,373 - 174,477,277 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936569800,760 - 820,271 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936569803,154 - 820,000 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMBIM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15120,348,735 - 120,365,007 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.115120,348,740 - 120,365,055 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TMBIM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110104,155,823 - 104,174,135 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10104,155,185 - 104,163,793 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604095,227,649 - 95,245,993 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmbim1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248236,735,497 - 6,756,093 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248236,736,216 - 6,757,285 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tmbim1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14147,740,758 - 147,757,584 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tmbim1
274 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:504
Count of miRNA genes:252
Interacting mature miRNAs:307
Transcripts:ENSRNOT00000019848
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
61352Bp34Blood pressure QTL 345arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)98216882386720295Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)94445825685262605Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)968875497121768150Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)983161999118999486Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat

Markers in Region
RH130780  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2975,871,995 - 75,872,213 (+)MAPPERmRatBN7.2
Rnor_6.0981,569,450 - 81,569,667NCBIRnor6.0
Rnor_5.0981,335,997 - 81,336,214UniSTSRnor5.0
RGSC_v3.4973,614,986 - 73,615,203UniSTSRGSC3.4
Celera973,448,481 - 73,448,698UniSTS
RH 3.4 Map9708.89UniSTS
Cytogenetic Map9q33UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000019848   ⟹   ENSRNOP00000019848
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl983,320,979 - 83,338,152 (-)Ensembl
mRatBN7.2 Ensembl975,871,835 - 75,889,069 (-)Ensembl
Rnor_6.0 Ensembl981,569,289 - 81,586,469 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000077336
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl981,576,139 - 81,586,553 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl981,574,173 - 81,575,900 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000086146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl981,577,320 - 81,579,875 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089952   ⟹   ENSRNOP00000073792
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl975,871,840 - 75,889,060 (-)Ensembl
Rnor_6.0 Ensembl981,575,197 - 81,586,116 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089985   ⟹   ENSRNOP00000072508
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl983,320,979 - 83,338,657 (-)Ensembl
mRatBN7.2 Ensembl975,871,852 - 75,889,060 (-)Ensembl
Rnor_6.0 Ensembl981,574,174 - 81,579,772 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000159932   ⟹   ENSRNOP00000100114
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl983,328,972 - 83,331,189 (-)Ensembl
RefSeq Acc Id: NM_001007713   ⟹   NP_001007714
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,320,972 - 83,338,152 (-)NCBI
mRatBN7.2975,871,835 - 75,889,016 (-)NCBI
Rnor_6.0981,569,289 - 81,586,469 (-)NCBI
Rnor_5.0981,335,836 - 81,353,016 (-)NCBI
RGSC_v3.4973,614,825 - 73,632,005 (-)RGD
Celera973,448,320 - 73,465,500 (-)RGD
Sequence:
RefSeq Acc Id: XM_017596477   ⟹   XP_017451966
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,320,974 - 83,334,921 (-)NCBI
mRatBN7.2975,871,841 - 75,885,801 (-)NCBI
Rnor_6.0981,569,289 - 81,582,650 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596478   ⟹   XP_017451967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,320,974 - 83,334,920 (-)NCBI
mRatBN7.2975,871,841 - 75,885,799 (-)NCBI
Rnor_6.0981,569,289 - 81,582,650 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596479   ⟹   XP_017451968
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,320,974 - 83,334,921 (-)NCBI
mRatBN7.2975,871,841 - 75,885,801 (-)NCBI
Rnor_6.0981,569,289 - 81,582,650 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039083668   ⟹   XP_038939596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,320,974 - 83,334,922 (-)NCBI
mRatBN7.2975,871,841 - 75,885,802 (-)NCBI
RefSeq Acc Id: XM_039083669   ⟹   XP_038939597
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,320,974 - 83,338,469 (-)NCBI
mRatBN7.2975,871,841 - 75,888,658 (-)NCBI
RefSeq Acc Id: XM_039083670   ⟹   XP_038939598
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8983,320,974 - 83,329,513 (-)NCBI
mRatBN7.2975,871,835 - 75,889,366 (-)NCBI
RefSeq Acc Id: NP_001007714   ⟸   NM_001007713
- UniProtKB: Q6AYE0 (UniProtKB/TrEMBL),   A0A0G2K6F5 (UniProtKB/TrEMBL),   A0A9K3Y6R8 (UniProtKB/TrEMBL),   A0A0G2K356 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451967   ⟸   XM_017596478
- Peptide Label: isoform X1
- UniProtKB: Q6AYE0 (UniProtKB/TrEMBL),   A0A0G2K6F5 (UniProtKB/TrEMBL),   A0A9K3Y6R8 (UniProtKB/TrEMBL),   A0A0G2K356 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451968   ⟸   XM_017596479
- Peptide Label: isoform X1
- UniProtKB: Q6AYE0 (UniProtKB/TrEMBL),   A0A0G2K6F5 (UniProtKB/TrEMBL),   A0A9K3Y6R8 (UniProtKB/TrEMBL),   A0A0G2K356 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451966   ⟸   XM_017596477
- Peptide Label: isoform X1
- UniProtKB: Q6AYE0 (UniProtKB/TrEMBL),   A0A0G2K6F5 (UniProtKB/TrEMBL),   A0A9K3Y6R8 (UniProtKB/TrEMBL),   A0A0G2K356 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072508   ⟸   ENSRNOT00000089985
Ensembl Acc Id: ENSRNOP00000073792   ⟸   ENSRNOT00000089952
Ensembl Acc Id: ENSRNOP00000019848   ⟸   ENSRNOT00000019848
RefSeq Acc Id: XP_038939598   ⟸   XM_039083670
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038939597   ⟸   XM_039083669
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K6F5 (UniProtKB/TrEMBL),   A0A9K3Y6R8 (UniProtKB/TrEMBL),   Q6AYE0 (UniProtKB/TrEMBL),   A0A0G2K356 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939596   ⟸   XM_039083668
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K6F5 (UniProtKB/TrEMBL),   A0A9K3Y6R8 (UniProtKB/TrEMBL),   Q6AYE0 (UniProtKB/TrEMBL),   A0A0G2K356 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000100114   ⟸   ENSRNOT00000159932

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AYE0-F1-model_v2 AlphaFold Q6AYE0 1-309 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696752
Promoter ID:EPDNEW_R7271
Type:multiple initiation site
Name:Tmbim1_2
Description:transmembrane BAX inhibitor motif containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R7272  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0981,579,791 - 81,579,851EPDNEW
RGD ID:13696747
Promoter ID:EPDNEW_R7272
Type:multiple initiation site
Name:Tmbim1_1
Description:transmembrane BAX inhibitor motif containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R7271  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0981,586,513 - 81,586,573EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359409 AgrOrtholog
BioCyc Gene G2FUF-27141 BioCyc
Ensembl Genes ENSRNOG00000014797 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000019848 ENTREZGENE
  ENSRNOT00000019848.7 UniProtKB/TrEMBL
  ENSRNOT00000089985.3 UniProtKB/TrEMBL
  ENSRNOT00000159932.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7123233 IMAGE-MGC_LOAD
InterPro Bax_inhibitor-1-related UniProtKB/TrEMBL
KEGG Report rno:316516 UniProtKB/TrEMBL
MGC_CLONE MGC:94053 IMAGE-MGC_LOAD
NCBI Gene 316516 ENTREZGENE
PANTHER PROTEIN LIFEGUARD 3 UniProtKB/TrEMBL
  UPF0005 UniProtKB/TrEMBL
Pfam Bax1-I UniProtKB/TrEMBL
PhenoGen Tmbim1 PhenoGen
RatGTEx ENSRNOG00000014797 RatGTEx
UniProt A0A0G2K356 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K6F5 ENTREZGENE
  A0A9K3Y6R8 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LIQ7_RAT UniProtKB/TrEMBL
  A6JVT9_RAT UniProtKB/TrEMBL
  F7FKW1_RAT UniProtKB/TrEMBL
  Q6AYE0 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Tmbim1  transmembrane BAX inhibitor motif containing 1  MGC94053  similar to RECS1  Symbol and Name updated 1299863 APPROVED
2005-07-29 MGC94053  similar to RECS1      Symbol and Name status set to provisional 70820 PROVISIONAL