Pacc1 (proton activated chloride channel 1) - Rat Genome Database

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Gene: Pacc1 (proton activated chloride channel 1) Rattus norvegicus
Analyze
Symbol: Pacc1
Name: proton activated chloride channel 1
RGD ID: 1359339
Description: Predicted to enable pH-gated chloride channel activity. Predicted to be involved in chloride transport. Predicted to be located in plasma membrane. Predicted to be part of chloride channel complex. Orthologous to human PACC1 (proton activated chloride channel 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC95217; PAC; proton-activated chloride channel; RGD1359339; similar to RIKEN cDNA 2310028N02; Tmem206; transmembrane protein 206
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813105,435,772 - 105,460,877 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl13105,435,799 - 105,461,095 (+)EnsemblGRCr8
mRatBN7.213102,904,668 - 102,929,770 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13102,894,612 - 102,929,770 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx13105,424,756 - 105,449,651 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013106,808,601 - 106,833,504 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013104,023,691 - 104,048,584 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.013110,006,975 - 110,032,790 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13110,007,010 - 110,031,895 (+)Ensemblrn6Rnor6.0
Rnor_5.013114,572,868 - 114,597,637 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.413107,387,221 - 107,412,108 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera13102,343,772 - 102,368,659 (+)NCBICelera
RGSC_v3.113107,576,324 - 107,601,210 (+)NCBI
Cytogenetic Map13q27NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:19581412   PMID:31023925   PMID:31318332  


Genomics

Comparative Map Data
Pacc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813105,435,772 - 105,460,877 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl13105,435,799 - 105,461,095 (+)EnsemblGRCr8
mRatBN7.213102,904,668 - 102,929,770 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13102,894,612 - 102,929,770 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx13105,424,756 - 105,449,651 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013106,808,601 - 106,833,504 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013104,023,691 - 104,048,584 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.013110,006,975 - 110,032,790 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13110,007,010 - 110,031,895 (+)Ensemblrn6Rnor6.0
Rnor_5.013114,572,868 - 114,597,637 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.413107,387,221 - 107,412,108 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera13102,343,772 - 102,368,659 (+)NCBICelera
RGSC_v3.113107,576,324 - 107,601,210 (+)NCBI
Cytogenetic Map13q27NCBI
PACC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381212,363,928 - 212,414,886 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1212,363,926 - 212,414,909 (-)Ensemblhg38GRCh38
GRCh371212,537,270 - 212,588,228 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361210,604,439 - 210,654,890 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1185,763,548 - 185,813,983 (-)NCBICelera
Cytogenetic Map1q32.3NCBI
HuRef1183,214,097 - 183,264,414 (-)NCBIHuRef
CHM1_11213,810,681 - 213,861,148 (-)NCBICHM1_1
T2T-CHM13v2.01211,608,613 - 211,659,583 (-)NCBIT2T-CHM13v2.0
Pacc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391191,058,099 - 191,083,481 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1191,058,109 - 191,083,111 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381191,325,902 - 191,351,284 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1191,325,912 - 191,350,914 (+)Ensemblmm10GRCm38
MGSCv371193,149,844 - 193,176,804 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361193,026,580 - 193,053,540 (+)NCBIMGSCv36mm8
Celera1198,256,067 - 198,283,053 (+)NCBICelera
Cytogenetic Map1H6NCBI
cM Map196.28NCBI
Pacc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554065,035,745 - 5,058,189 (+)Ensembl
ChiLan1.0NW_0049554065,036,167 - 5,058,189 (+)NCBIChiLan1.0ChiLan1.0
PACC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2136,990,596 - 37,042,132 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1136,955,055 - 37,007,697 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01187,928,923 - 187,980,274 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11192,790,932 - 192,843,577 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1192,790,932 - 192,843,577 (-)EnsemblpanPan2panpan1.1
PACC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1710,568,030 - 10,606,672 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl710,568,026 - 10,610,578 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha710,143,342 - 10,181,979 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0710,273,755 - 10,312,411 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl710,273,755 - 10,312,420 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1710,196,568 - 10,235,194 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0710,297,886 - 10,336,505 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0710,421,365 - 10,460,215 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pacc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934463,868,253 - 63,901,887 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365571,108,511 - 1,142,291 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365571,108,556 - 1,142,844 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PACC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9130,835,317 - 131,001,479 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.19130,968,208 - 131,001,491 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29144,015,830 - 144,048,093 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PACC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12517,116,762 - 17,160,851 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2517,116,852 - 17,161,760 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605517,617,246 - 17,661,350 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pacc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477117,863,411 - 17,900,353 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477117,863,411 - 17,900,222 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Pacc1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11069,415,295 - 69,439,268 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pacc1
93 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:232
Count of miRNA genes:154
Interacting mature miRNAs:168
Transcripts:ENSRNOT00000005387
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1368983334109350286Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)1371610804109350286Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1383286150109350286Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat

Markers in Region
RH78888  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.213102,919,124 - 102,919,277 (+)MAPPERmRatBN7.2
Rnor_6.013110,021,411 - 110,021,563NCBIRnor6.0
Rnor_5.013114,586,992 - 114,587,144UniSTSRnor5.0
RGSC_v3.413107,401,622 - 107,401,774UniSTSRGSC3.4
Celera13102,358,173 - 102,358,325UniSTS
Cytogenetic Map13q27UniSTS
RH134564  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.213102,929,368 - 102,929,550 (+)MAPPERmRatBN7.2
Rnor_6.013110,031,655 - 110,031,836NCBIRnor6.0
Rnor_5.013114,597,236 - 114,597,417UniSTSRnor5.0
RGSC_v3.413107,411,866 - 107,412,047UniSTSRGSC3.4
Celera13102,368,417 - 102,368,598UniSTS
RH 3.4 Map13727.8UniSTS
Cytogenetic Map13q27UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 91 59 6 355 191 11 140 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000005387   ⟹   ENSRNOP00000005387
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl13105,435,799 - 105,461,095 (+)Ensembl
mRatBN7.2 Ensembl13102,904,682 - 102,929,769 (+)Ensembl
Rnor_6.0 Ensembl13110,007,010 - 110,031,895 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105057   ⟹   ENSRNOP00000078608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl13105,437,808 - 105,461,095 (+)Ensembl
mRatBN7.2 Ensembl13102,906,701 - 102,929,770 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114123   ⟹   ENSRNOP00000085237
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl13102,894,612 - 102,929,770 (+)Ensembl
RefSeq Acc Id: NM_001007679   ⟹   NP_001007680
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813105,435,831 - 105,460,718 (+)NCBI
mRatBN7.213102,904,724 - 102,929,611 (+)NCBI
Rnor_6.013110,007,010 - 110,031,897 (+)NCBI
Rnor_5.013114,572,868 - 114,597,637 (+)NCBI
RGSC_v3.413107,387,221 - 107,412,108 (+)RGD
Celera13102,343,772 - 102,368,659 (+)RGD
Sequence:
RefSeq Acc Id: XM_006250481   ⟹   XP_006250543
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813105,435,772 - 105,460,877 (+)NCBI
mRatBN7.213102,904,668 - 102,929,770 (+)NCBI
Rnor_6.013110,006,980 - 110,032,790 (+)NCBI
Rnor_5.013114,572,868 - 114,597,637 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063272397   ⟹   XP_063128467
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813105,435,772 - 105,459,286 (+)NCBI
RefSeq Acc Id: XR_010056921
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr813105,435,772 - 105,459,282 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001007680 (Get FASTA)   NCBI Sequence Viewer  
  XP_006250543 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128467 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH82061 (Get FASTA)   NCBI Sequence Viewer  
  EDL95002 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000005387
  ENSRNOP00000005387.4
GenBank Protein Q66H28 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001007680   ⟸   NM_001007679
- UniProtKB: Q66H28 (UniProtKB/Swiss-Prot),   A6JGZ6 (UniProtKB/TrEMBL),   A0A8I5ZNJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250543   ⟸   XM_006250481
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000005387   ⟸   ENSRNOT00000005387
Ensembl Acc Id: ENSRNOP00000085237   ⟸   ENSRNOT00000114123
Ensembl Acc Id: ENSRNOP00000078608   ⟸   ENSRNOT00000105057
RefSeq Acc Id: XP_063128467   ⟸   XM_063272397
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q66H28-F1-model_v2 AlphaFold Q66H28 1-350 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699115
Promoter ID:EPDNEW_R9640
Type:initiation region
Name:Tmem206_1
Description:transmembrane protein 206
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.013110,006,968 - 110,007,028EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359339 AgrOrtholog
BioCyc Gene G2FUF-16846 BioCyc
Ensembl Genes ENSRNOG00000003915 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000005387 ENTREZGENE
  ENSRNOT00000005387.7 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7132483 IMAGE-MGC_LOAD
InterPro TMEM206 UniProtKB/Swiss-Prot
KEGG Report rno:305070 UniProtKB/Swiss-Prot
MGC_CLONE MGC:95217 IMAGE-MGC_LOAD
NCBI Gene 305070 ENTREZGENE
PANTHER PROTON-ACTIVATED CHLORIDE CHANNEL UniProtKB/Swiss-Prot
  PTHR16087 UniProtKB/Swiss-Prot
Pfam TMEM206 UniProtKB/Swiss-Prot
PhenoGen Pacc1 PhenoGen
RatGTEx ENSRNOG00000003915 RatGTEx
UniProt A0A8I5ZNJ7 ENTREZGENE, UniProtKB/TrEMBL
  A6JGZ6 ENTREZGENE, UniProtKB/TrEMBL
  Q66H28 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-05 Pacc1  proton activated chloride channel 1  Tmem206  transmembrane protein 206  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-02 Tmem206  transmembrane protein 206  RGD1359339  similar to RIKEN cDNA 2310028N02  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 RGD1359339  similar to RIKEN cDNA 2310028N02  MGC95217    Symbol updated 1299863 APPROVED
2005-07-29 MGC95217  similar to RIKEN cDNA 2310028N02      Symbol and Name status set to provisional 70820 PROVISIONAL