Uxt (ubiquitously-expressed, prefoldin-like chaperone) - Rat Genome Database

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Gene: Uxt (ubiquitously-expressed, prefoldin-like chaperone) Rattus norvegicus
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Symbol: Uxt
Name: ubiquitously-expressed, prefoldin-like chaperone
RGD ID: 1359326
Description: Predicted to enable beta-tubulin binding activity; chromatin binding activity; and transcription corepressor activity. Predicted to be involved in centrosome cycle and negative regulation of transcription by RNA polymerase II. Predicted to be located in centrosome; cytoplasm; and nucleus. Predicted to be part of RPAP3/R2TP/prefoldin-like complex and mediator complex. Predicted to be active in chromatin. Orthologous to human UXT (ubiquitously expressed prefoldin like chaperone); INTERACTS WITH 6-propyl-2-thiouracil; acetamide; amitrole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC105797; similar to ubiquitously-expressed transcript isoform 1; ubiquitously expressed transcript
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X3,679,630 - 3,691,944 (+)NCBIGRCr8
mRatBN7.2X1,126,110 - 1,138,670 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX1,126,162 - 1,138,663 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX1,154,446 - 1,166,501 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X4,630,138 - 4,642,193 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X950,682 - 962,723 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X1,275,402 - 1,287,781 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX1,275,612 - 1,287,512 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X2,090,439 - 2,102,802 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X12,616,439 - 12,628,479 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X12,621,996 - 12,634,035 (-)NCBI
CeleraX1,695,268 - 1,707,300 (+)NCBICelera
Cytogenetic MapXq11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
UxtRatautistic disorder  ISOUXT (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
UxtRatcongenital disorder of glycosylation type IIm  ISOUXT (Homo sapiens)8554872ClinVar Annotator: match by term: DEVELOPMENTAL AND EPILEPTIC ENCEPHALOPATHY 22ClinVarPMID:28492532
UxtRatimmune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome  ISOUXT (Homo sapiens)8554872ClinVar Annotator: match by term: Insulin-dependent diabetes mellitus secretory diarrhea syndromeClinVarPMID:11137992 more ...
UxtRatneurodegeneration with brain iron accumulation 5  ISOUXT (Homo sapiens)8554872ClinVar Annotator: match by term: Beta-propeller protein-associated neurodegenerationClinVarPMID:28492532
UxtRatsyndromic X-linked intellectual disability Lubs type  ISOUXT (Homo sapiens)8554872ClinVar Annotator: match by term: Syndromic X-linked intellectual disability Lubs typeClinVarPMID:25741868
UxtRatX-linked epilepsy with variable learning disabilities and behavior disorders  ISOUXT (Homo sapiens)8554872ClinVar more ...ClinVarPMID:28492532
UxtRatX-linked severe congenital neutropenia  ISOUXT (Homo sapiens)8554872ClinVar Annotator: match by term: X-linked severe congenital neutropeniaClinVarPMID:10698340 more ...
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
UxtRatProstatic Neoplasms  ISOUXT (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19318562

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
UxtRat1,2-dimethylhydrazine multiple interactionsISOUxt (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of UXT mRNACTDPMID:22206623
UxtRat17beta-hydroxy-17-methylestra-4,9,11-trien-3-one multiple interactionsISOUXT (Homo sapiens)6480464Metribolone promotes the reaction [UXT protein binds to ATR promoter] more ...CTDPMID:19318562
UxtRat17beta-hydroxy-17-methylestra-4,9,11-trien-3-one affects response to substanceISOUXT (Homo sapiens)6480464UXT protein affects the susceptibility to MetriboloneCTDPMID:19318562
UxtRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOUxt (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of UXT mRNACTDPMID:21570461
UxtRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOUxt (Mus musculus)6480464[TIPARP gene mutant form results in increased susceptibility to Tetrachlorodibenzodioxin] which results in decreased expression of UXT mRNACTDPMID:25975270
UxtRat4,4'-diaminodiphenylmethane affects expressionISOUxt (Mus musculus)64804644 and 4'-diaminodiphenylmethane affects the expression of UXT mRNACTDPMID:18648102
UxtRat4,4'-sulfonyldiphenol increases expressionISOUxt (Mus musculus)6480464bisphenol S results in increased expression of UXT mRNACTDPMID:39298647
UxtRat5-fluorouracil increases expressionISOUXT (Homo sapiens)6480464Fluorouracil results in increased expression of UXT proteinCTDPMID:15585135 and PMID:16803524
UxtRat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of UXT mRNACTDPMID:30047161
UxtRatacetamide decreases expressionEXP 6480464acetamide results in decreased expression of UXT mRNACTDPMID:31881176
UxtRataflatoxin B1 decreases methylationISOUXT (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of UXT geneCTDPMID:27153756
UxtRatamitrole increases expressionEXP 6480464Amitrole results in increased expression of UXT mRNACTDPMID:30047161
UxtRatarsenite(3-) multiple interactionsISOUXT (Homo sapiens)6480464arsenite promotes the reaction [G3BP1 protein binds to UXT mRNA]CTDPMID:32406909
UxtRatbenzo[a]pyrene affects methylationISOUXT (Homo sapiens)6480464Benzo(a)pyrene affects the methylation of UXT promoterCTDPMID:27901495
UxtRatbicalutamide affects response to substanceISOUXT (Homo sapiens)6480464UXT protein affects the susceptibility to bicalutamideCTDPMID:19318562
UxtRatbisphenol A affects expressionEXP 6480464bisphenol A affects the expression of UXT mRNACTDPMID:25181051
UxtRatbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of UXT mRNACTDPMID:34947998
UxtRatbleomycin A5 decreases expressionISOUXT (Homo sapiens)6480464bleomycetin results in decreased expression of UXT mRNACTDPMID:21040473
UxtRatcadmium dichloride increases expressionISOUXT (Homo sapiens)6480464Cadmium Chloride results in increased expression of UXT mRNACTDPMID:38568856
UxtRatcarbon nanotube increases expressionISOUxt (Mus musculus)6480464Nanotubes and Carbon results in increased expression of UXT mRNACTDPMID:25554681

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Biological Process
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Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
UxtRatcentrosome cycle involved_inISSUniProtKB:Q9UBK91600115GO_REF:0000024HGNC-UCLGO_REF:0000024
UxtRatcentrosome cycle involved_inIEAUniProtKB:Q9UBK9 and ensembl:ENSP000003277971600115GO_REF:0000107EnsemblGO_REF:0000107
UxtRatcentrosome cycle involved_inISOUXT (Homo sapiens)1624291 PMID:16221885RGDPMID:16221885
UxtRatmicrotubule cytoskeleton organization involved_inISSUniProtKB:Q9UBK91600115GO_REF:0000024HGNC-UCLGO_REF:0000024
UxtRatmicrotubule cytoskeleton organization involved_inIEAUniProtKB:Q9UBK9 and ensembl:ENSP000003277971600115GO_REF:0000107EnsemblGO_REF:0000107
UxtRatmicrotubule cytoskeleton organization involved_inISOUXT (Homo sapiens)1624291 PMID:16221885RGDPMID:16221885
UxtRatnegative regulation of transcription by RNA polymerase II involved_inISSUniProtKB:Q9UBK91600115GO_REF:0000024UniProtGO_REF:0000024
UxtRatnegative regulation of transcription by RNA polymerase II involved_inIEAUniProtKB:Q9UBK9 and ensembl:ENSP000003277971600115GO_REF:0000107EnsemblGO_REF:0000107
UxtRatnegative regulation of transcription by RNA polymerase II involved_inIEAInterPro:IPR0039941600115GO_REF:0000002InterProGO_REF:0000002
UxtRatnegative regulation of transcription by RNA polymerase II involved_inISOUXT (Homo sapiens)1624291 PMID:21730289RGDPMID:21730289
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Cellular Component
1 to 20 of 23 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
UxtRatcentrosome located_inISSUniProtKB:Q9UBK91600115GO_REF:0000024HGNC-UCLGO_REF:0000024
UxtRatcentrosome located_inIEAUniProtKB:Q9UBK9 and ensembl:ENSP000003277971600115GO_REF:0000107EnsemblGO_REF:0000107
UxtRatcentrosome located_inIEAUniProtKB-SubCell:SL-00481600115GO_REF:0000044UniProtGO_REF:0000044
UxtRatcentrosome located_inISOUXT (Homo sapiens)1624291 PMID:16221885RGDPMID:16221885
UxtRatchromatin is_active_inIBAPANTHER:PTN000331217 and ZFIN:ZDB-GENE-040912-1181600115GO_REF:0000033GO_CentralGO_REF:0000033
UxtRatcytoplasm located_inISOUXT (Homo sapiens)1624291 PMID:21730289RGDPMID:21730289
UxtRatcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
UxtRatcytoplasm located_inIEAUniProtKB:Q9UBK9 and ensembl:ENSP000003277971600115GO_REF:0000107EnsemblGO_REF:0000107
UxtRatcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
UxtRatcytoplasm located_inISSUniProtKB:Q9UBK91600115GO_REF:0000024UniProtGO_REF:0000024
UxtRatcytoskeleton located_inISSUniProtKB:Q9UBK91600115GO_REF:0000024HGNC-UCLGO_REF:0000024
UxtRatcytoskeleton located_inIEAUniProtKB-KW:KW-02061600115GO_REF:0000043UniProtGO_REF:0000043
UxtRatcytoskeleton located_inIEAUniProtKB:Q9UBK9 and ensembl:ENSP000003277971600115GO_REF:0000107EnsemblGO_REF:0000107
UxtRatcytoskeleton located_inISOUXT (Homo sapiens)1624291 PMID:12762840RGDPMID:12762840
UxtRatmediator complex part_ofIBAPANTHER:PTN000331217 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
UxtRatnucleus located_inISSUniProtKB:Q9UBK91600115GO_REF:0000024HGNC-UCLGO_REF:0000024
UxtRatnucleus located_inIEAUniProtKB:Q9UBK9 and ensembl:ENSP000003277971600115GO_REF:0000107EnsemblGO_REF:0000107
UxtRatnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
UxtRatnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
UxtRatnucleus located_inISOUXT (Homo sapiens)1624291 PMID:12762840 and PMID:21730289RGDPMID:12762840 and PMID:21730289
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Molecular Function
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Object Symbol
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Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
UxtRatactin filament binding NOT|enablesISOUXT (Homo sapiens)1624291 PMID:12762840RGDPMID:12762840
UxtRatbeta-tubulin binding enablesISOUXT (Homo sapiens)1624291 PMID:12762840RGDPMID:12762840
UxtRatbeta-tubulin binding enablesIEAUniProtKB:Q9UBK9 and ensembl:ENSP000003277971600115GO_REF:0000107EnsemblGO_REF:0000107
UxtRatbeta-tubulin binding enablesISSUniProtKB:Q9UBK91600115GO_REF:0000024HGNC-UCLGO_REF:0000024
UxtRatchromatin binding enablesISSUniProtKB:Q9UBK91600115GO_REF:0000024UniProtGO_REF:0000024
UxtRatchromatin binding enablesIEAUniProtKB:Q9UBK9 and ensembl:ENSP000003277971600115GO_REF:0000107EnsemblGO_REF:0000107
UxtRatchromatin binding enablesISOUXT (Homo sapiens)1624291 PMID:21730289RGDPMID:21730289
UxtRatprotein binding enablesISOUXT (Homo sapiens)1624291UniProtKB:O43684 more ...RGDPMID:12762840 more ...
UxtRatprotein binding enablesISOUXT (Homo sapiens) and UniProtKB:Q9UBK9-21624291UniProtKB:P16989 and PMID:37608570RGDPMID:37608570
UxtRattranscription corepressor activity enablesISSUniProtKB:Q9UBK91600115GO_REF:0000024UniProtGO_REF:0000024
UxtRattranscription corepressor activity enablesIBAPANTHER:PTN000331275 and UniProtKB:Q9UBK91600115GO_REF:0000033GO_CentralGO_REF:0000033
UxtRattranscription corepressor activity enablesIEAInterPro:IPR0039941600115GO_REF:0000002InterProGO_REF:0000002
UxtRattranscription corepressor activity enablesIEAUniProtKB:Q9UBK9 and ensembl:ENSP000003277971600115GO_REF:0000107EnsemblGO_REF:0000107
UxtRattranscription corepressor activity enablesISOUXT (Homo sapiens)1624291 PMID:21730289RGDPMID:21730289
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#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Cloning and characterization of UXT, a novel gene in human Xp11, which is widely and abundantly expressed in tumor tissue. Schroer A, etal., Genomics 1999 Mar 15;56(3):340-3.
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
PMID:12762840   PMID:16221885   PMID:21730289  



Uxt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X3,679,630 - 3,691,944 (+)NCBIGRCr8
mRatBN7.2X1,126,110 - 1,138,670 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX1,126,162 - 1,138,663 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX1,154,446 - 1,166,501 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X4,630,138 - 4,642,193 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X950,682 - 962,723 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X1,275,402 - 1,287,781 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX1,275,612 - 1,287,512 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X2,090,439 - 2,102,802 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X12,616,439 - 12,628,479 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X12,621,996 - 12,634,035 (-)NCBI
CeleraX1,695,268 - 1,707,300 (+)NCBICelera
Cytogenetic MapXq11NCBI
UXT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X47,651,796 - 47,659,180 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX47,651,796 - 47,659,180 (-)EnsemblGRCh38hg38GRCh38
GRCh37X47,511,195 - 47,518,579 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X47,396,139 - 47,403,504 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X47,267,449 - 47,274,770NCBI
CeleraX51,706,458 - 51,713,823 (-)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX45,223,944 - 45,231,332 (-)NCBIHuRef
CHM1_1X47,542,327 - 47,549,715 (-)NCBICHM1_1
T2T-CHM13v2.0X47,061,699 - 47,069,083 (-)NCBIT2T-CHM13v2.0
Uxt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X20,818,162 - 20,828,259 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX20,807,961 - 20,828,256 (-)EnsemblGRCm39 Ensembl
GRCm38X20,951,665 - 20,962,017 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX20,941,722 - 20,962,017 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X20,528,791 - 20,539,104 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X20,108,624 - 20,118,937 (-)NCBIMGSCv36mm8
CeleraX19,085,804 - 19,096,117 (-)NCBICelera
Cytogenetic MapXA1.3NCBI
cM MapX16.46NCBI
Uxt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955516420,616 - 430,134 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955516421,402 - 429,804 (+)NCBIChiLan1.0ChiLan1.0
UXT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X49,278,273 - 49,285,734 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X49,281,645 - 49,289,111 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X40,087,712 - 40,095,164 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X47,983,770 - 47,991,169 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX47,983,770 - 47,991,148 (-)Ensemblpanpan1.1panPan2
UXT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X41,271,908 - 41,280,433 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX41,271,908 - 41,280,340 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX15,646,536 - 15,655,076 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X41,405,725 - 41,413,955 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX41,405,719 - 41,413,934 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X41,393,272 - 41,401,810 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X41,381,544 - 41,390,081 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X41,474,238 - 41,482,772 (-)NCBIUU_Cfam_GSD_1.0
Uxt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X33,577,677 - 33,587,087 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650213,418,403 - 13,427,767 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650213,419,520 - 13,427,777 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UXT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX42,176,145 - 42,184,079 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X42,176,142 - 42,184,131 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X47,294,749 - 47,302,738 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UXT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X44,828,836 - 44,836,433 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX44,828,841 - 44,835,985 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607610,083,180 - 10,090,625 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Uxt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624978208,432 - 217,497 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624978209,222 - 216,909 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Uxt
24 total Variants

Predicted Target Of
Summary Value
Count of predictions:170
Count of miRNA genes:116
Interacting mature miRNAs:121
Transcripts:ENSRNOT00000013476
Prediction methods:Microtar, Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat

RH142345  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8X3,681,887 - 3,682,316 (+)Marker Load Pipeline
mRatBN7.2X1,128,345 - 1,128,774 (+)MAPPERmRatBN7.2
Rnor_6.0X1,277,596 - 1,278,024NCBIRnor6.0
Rnor_5.0X2,092,617 - 2,093,045UniSTSRnor5.0
RGSC_v3.4X12,626,067 - 12,626,495UniSTSRGSC3.4
CeleraX1,697,252 - 1,697,680UniSTS
RH 3.4 Map10422.7UniSTS
Cytogenetic MapXq12UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
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Ensembl Acc Id: ENSRNOT00000013476   ⟹   ENSRNOP00000013476
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX1,126,162 - 1,138,663 (+)Ensembl
Rnor_6.0 EnsemblX1,275,612 - 1,287,512 (+)Ensembl
RefSeq Acc Id: NM_001006982   ⟹   NP_001006983
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X3,679,904 - 3,691,944 (+)NCBI
mRatBN7.2X1,126,362 - 1,138,403 (+)NCBI
Rnor_6.0X1,275,612 - 1,287,514 (+)NCBI
Rnor_5.0X2,090,439 - 2,102,802 (+)NCBI
RGSC_v3.4X12,616,439 - 12,628,479 (-)RGD
CeleraX1,695,268 - 1,707,300 (+)RGD
Sequence:
RefSeq Acc Id: XM_006256611   ⟹   XP_006256673
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X3,679,630 - 3,691,944 (+)NCBI
mRatBN7.2X1,126,110 - 1,138,670 (+)NCBI
Rnor_6.0X1,275,402 - 1,287,781 (+)NCBI
Rnor_5.0X2,090,439 - 2,102,802 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063279881   ⟹   XP_063135951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X3,679,912 - 3,691,944 (+)NCBI
RefSeq Acc Id: XM_063279882   ⟹   XP_063135952
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X3,679,709 - 3,691,944 (+)NCBI
RefSeq Acc Id: NP_001006983   ⟸   NM_001006982
- UniProtKB: Q63ZY7 (UniProtKB/Swiss-Prot),   A6JZQ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256673   ⟸   XM_006256611
- Peptide Label: isoform X2
- UniProtKB: Q63ZY7 (UniProtKB/Swiss-Prot),   A6JZQ2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000013476   ⟸   ENSRNOT00000013476
RefSeq Acc Id: XP_063135952   ⟸   XM_063279882
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063135951   ⟸   XM_063279881
- Peptide Label: isoform X1

Name Modeler Protein Id AA Range Protein Structure
AF-Q63ZY7-F1-model_v2 AlphaFold Q63ZY7 1-157 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 25 of 25 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-3204 BioCyc
Ensembl Genes ENSRNOG00000009893 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000085857 ENTREZGENE
Ensembl Transcript ENSRNOT00000013476.8 UniProtKB/Swiss-Prot
  ENSRNOT00000145926 ENTREZGENE
Gene3D-CATH 1.10.287.370 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7303683 IMAGE-MGC_LOAD
InterPro Prefoldin UniProtKB/Swiss-Prot
  Prefoldin_subunit_alpha UniProtKB/Swiss-Prot
  UXT UniProtKB/Swiss-Prot
KEGG Report rno:299313 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105797 IMAGE-MGC_LOAD
NCBI Gene 299313 ENTREZGENE
PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10 UniProtKB/Swiss-Prot
  PROTEIN UXT UniProtKB/Swiss-Prot
Pfam Prefoldin UniProtKB/Swiss-Prot
PhenoGen Uxt PhenoGen
PRINTS UXTPROTEIN UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000009893 RatGTEx
  ENSRNOG00000085857 RatGTEx
Superfamily-SCOP Prefoldin UniProtKB/Swiss-Prot
UniProt A6JZQ2 ENTREZGENE, UniProtKB/TrEMBL
  A6JZQ4_RAT UniProtKB/TrEMBL
  A6JZQ6_RAT UniProtKB/TrEMBL
  Q63ZY7 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 25 of 25 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-12-06 Uxt  ubiquitously-expressed, prefoldin-like chaperone  Uxt  ubiquitously expressed transcript  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Uxt  ubiquitously expressed transcript  MGC105797  similar to ubiquitously-expressed transcript isoform 1  Symbol and Name updated 1299863 APPROVED
2005-07-29 MGC105797  similar to ubiquitously-expressed transcript isoform 1      Symbol and Name status set to provisional 70820 PROVISIONAL