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Gene: Marchf3 (membrane associated ring-CH-type finger 3) Rattus norvegicus

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Symbol:

Marchf3

Name:

membrane associated ring-CH-type finger 3

RGD ID:

1359308

Description:

Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in endosome and lysosome. Orthologous to human MARCHF3 (membrane associated ring-CH-type finger 3); INTERACTS WITH (+)-schisandrin B; 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

E3 ubiquitin-protein ligase MARCH3; E3 ubiquitin-protein ligase MARCHF3; MARCH-III; March3; membrane-associated ring finger (C3HC4) 3; membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase; membrane-associated RING finger protein 3; membrane-associated RING-CH protein III; MGC94648; RING-type E3 ubiquitin transferase MARCH3; RING-type E3 ubiquitin transferase MARCHF3; similar to Hypothetical protein MGC48332

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MARCHF3 (membrane associated ring-CH-type finger 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Marchf3 (membrane associated ring-CH-type finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MARCHF3 (membrane associated ring-CH-type finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MARCHF3 (membrane associated ring-CH-type finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Marchf3 (membrane associated ring-CH-type finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MARCHF3 (membrane associated ring-CH-type finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MARCHF3 (membrane associated ring-CH-type finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Marchf3 (membrane associated ring-CH-type finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Marchf3 (membrane associated ring-CH-type finger 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MARCHF3 (membrane associated ring-CH-type finger 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Marchf3 (membrane associated ring-CH-type finger 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zgc:158785	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	CG13442	Alliance	DIOPT (OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	marc-3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	marc-3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG17717	Alliance	DIOPT (PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	marchf3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	52,435,292 - 52,587,321 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	52,435,296 - 52,587,297 (-)	Ensembl				GRCr8
mRatBN7.2	18	50,237,218 - 50,389,343 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	50,237,230 - 50,389,150 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	18	52,275,435 - 52,427,394 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	52,983,421 - 53,135,430 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	50,781,310 - 50,933,263 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	51,844,980 - 51,998,017 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	51,844,976 - 52,017,734 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	18	51,040,240 - 51,192,614 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	52,530,738 - 52,682,742 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	48,380,978 - 48,530,010 (-)	NCBI		Celera
RGSC_v3.1	18	52,576,234 - 52,732,476 (-)	NCBI
Cytogenetic Map	18	q12.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(+)-schisandrin B (EXP)

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

1,3-dinitrobenzene (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-hydroxypropanoic acid (ISO)

2-palmitoylglycerol (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

Benzo[k]fluoranthene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

C60 fullerene (EXP)

calcitriol (ISO)

chloroprene (EXP)

chlorpyrifos (ISO)

cobalt dichloride (EXP,ISO)

cyclosporin A (ISO)

cytarabine (ISO)

diarsenic trioxide (ISO)

diuron (EXP)

dorsomorphin (ISO)

endosulfan (EXP)

entinostat (ISO)

genistein (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

hydroquinone (ISO)

indole-3-methanol (EXP)

lipopolysaccharide (ISO)

malathion (ISO)

methyl methanesulfonate (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

paracetamol (EXP,ISO)

paraquat (EXP)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

propanal (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

serpentine asbestos (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (EXP)

triphenyl phosphate (EXP)

triptonide (ISO)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endocytosis (IEA)

protein ubiquitination (IBA,IEA)

Cellular Component

cytoplasmic vesicle (IEA)

cytoplasmic vesicle membrane (IEA)

early endosome membrane (IEA)

endosome (IEA,ISO,ISS)

lysosome (IEA,ISO,ISS)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

transferase activity (IEA)

ubiquitin protein ligase activity (IEA)

ubiquitin-protein transferase activity (IBA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Downregulation of major histocompatibility complex class I by human ubiquitin ligases related to viral immune evasion proteins.	Bartee E, etal., J Virol 2004 Feb;78(3):1109-20.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:16428329

Genomics

Comparative Map Data

Marchf3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	52,435,292 - 52,587,321 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	52,435,296 - 52,587,297 (-)	Ensembl				GRCr8
mRatBN7.2	18	50,237,218 - 50,389,343 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	50,237,230 - 50,389,150 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	18	52,275,435 - 52,427,394 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	52,983,421 - 53,135,430 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	50,781,310 - 50,933,263 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	51,844,980 - 51,998,017 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	51,844,976 - 52,017,734 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	18	51,040,240 - 51,192,614 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	52,530,738 - 52,682,742 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	48,380,978 - 48,530,010 (-)	NCBI		Celera
RGSC_v3.1	18	52,576,234 - 52,732,476 (-)	NCBI
Cytogenetic Map	18	q12.1	NCBI

MARCHF3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	126,867,714 - 127,030,558 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	126,867,714 - 127,031,268 (-)	Ensembl			hg38	GRCh38
GRCh37	5	126,203,406 - 126,366,250 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	126,233,448 - 126,394,149 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	5	126,233,451 - 126,394,145	NCBI
Celera	5	122,380,313 - 122,496,109 (-)	NCBI		Celera
Celera	5	122,159,285 - 122,169,983 (-)	NCBI		Celera
Cytogenetic Map	5	q23.2	NCBI
HuRef	5	121,395,093 - 121,558,096 (-)	NCBI		HuRef
CHM1_1	5	125,636,218 - 125,799,295 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	127,387,759 - 127,550,637 (-)	NCBI		T2T-CHM13v2.0

Marchf3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	56,894,788 - 57,058,587 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	56,894,788 - 57,058,620 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	18	56,761,716 - 56,925,515 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	56,761,716 - 56,925,548 (-)	Ensembl			mm10	GRCm38
MGSCv37	18	56,921,370 - 57,085,202 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	18	56,887,085 - 57,050,917 (-)	NCBI		MGSCv36	mm8
Celera	18	58,072,257 - 58,234,974 (-)	NCBI		Celera
Cytogenetic Map	18	D3	NCBI
cM Map	18	30.92	NCBI

MARCHF3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	122,182,742 - 122,331,584 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	120,318,384 - 120,471,295 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	122,271,285 - 122,436,113 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	128,040,683 - 128,204,600 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	128,040,683 - 128,090,477 (-)	Ensembl			panPan2	panpan1.1

MARCHF3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	16,077,215 - 16,213,730 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	16,077,660 - 16,214,300 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	14,869,615 - 15,006,170 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	16,803,162 - 16,939,976 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	16,803,598 - 16,939,933 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	15,533,109 - 15,669,853 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	15,379,487 - 15,516,652 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	15,977,029 - 16,113,816 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Marchf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	138,661,001 - 138,805,566 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936504	237,281 - 272,747 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936504	237,260 - 422,587 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MARCHF3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	129,880,661 - 130,026,419 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	129,881,051 - 130,026,380 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	135,176,978 - 135,323,536 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MARCHF3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	29,836,665 - 30,013,484 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	29,839,576 - 29,985,684 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666034	48,041,428 - 48,232,545 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Marchf3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624774	14,617,713 - 14,779,868 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624774	14,617,727 - 14,785,177 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Marchf3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	15	74,873,720 - 75,062,618 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Marchf3
1357 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	415
Count of miRNA genes:	241
Interacting mature miRNAs:	294
Transcripts:	ENSRNOT00000039177
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331733	Bp233	Blood pressure QTL 233	3.97196		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	25071126	83910656	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	22015562	61600538	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	23494057	85487725	Rat
1331742	Bp228	Blood pressure QTL 228	3.88752		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31610505	77371277	Rat
1331736	Bp227	Blood pressure QTL 227	2.791		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	48917054	60064728	Rat
631834	Sach3	Saccharin preference QTL 3	3.9	0.01	consumption behavior trait (VT:0002069)	calculated saccharin drink intake volume (CMO:0001600)	18	38575919	83575919	Rat
12904668	Bw188	Body weight QTL 188		0.03	body mass (VT:0001259)	body weight (CMO:0000012)	18	26822186	71822186	Rat
12904669	Cm125	Cardiac mass QTL 125		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	26822186	71822186	Rat
12904670	Cm126	Cardiac mass QTL 126		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	26822186	71822186	Rat
6893683	Bw110	Body weight QTL 110	2.7	0.002	body mass (VT:0001259)	body weight (CMO:0000012)	18	45620306	86134022	Rat
1331727	Bp237	Blood pressure QTL 237	3.053		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31610505	63968306	Rat
12904677	Kidm72	Kidney mass QTL 72		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	26822186	71822186	Rat
9589041	Epfw12	Epididymal fat weight QTL 12	17.08	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	18	48915737	86134022	Rat
8694432	Bw165	Body weight QTL 165	3.81	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	18	48915737	86134022	Rat
12904673	Cm127	Cardiac mass QTL 127		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	26822186	71822186	Rat
12904675	Am19	Aortic mass QTL 19		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	26822186	71822186	Rat
1331774	Bp226	Blood pressure QTL 226	4.41065		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31610505	77371277	Rat
9589816	Gluco68	Glucose level QTL 68	7.25	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	18	31990891	76990891	Rat
1331770	Bp234	Blood pressure QTL 234	3.807		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	45620306	86134022	Rat
61360	Eaey	Experimental allergic encephalomyelitis QTL y	3		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis duration (CMO:0001424)	18	49187226	62647720	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	12066482	85493247	Rat
2303120	Mamtr8	Mammary tumor resistance QTL 8		0.001	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	18	31610505	85493247	Rat
12880368	Bw187	Body weight QTL 187		0.045	body mass (VT:0001259)	body weight (CMO:0000012)	18	33379158	78379158	Rat
61367	Iddm4	Insulin dependent diabetes mellitus QTL 4	2.33	0.0074	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	18	40462383	85462383	Rat
9590318	Scort22	Serum corticosterone level QTL 22	7.64	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	31990891	76990891	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	54490981	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	12066482	85493247	Rat
1331754	Bp230	Blood pressure QTL 230	4.61609		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	15642280	86134022	Rat
12904069	Cm123	Cardiac mass QTL 123		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	33379158	78379158	Rat
1331798	Bp224	Blood pressure QTL 224	3.53873		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31610505	77371277	Rat
12904070	Cm124	Cardiac mass QTL 124		0.01	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	33379158	78379158	Rat
12904071	Am18	Aortic mass QTL 18		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	33379158	78379158	Rat
2303584	Gluco55	Glucose level QTL 55	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	18	50795212	86134022	Rat
2301413	Bp318	Blood pressure QTL 318		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	26822186	71822186	Rat
61383	Bp47	Blood pressure QTL 47	17.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	31522783	76522783	Rat
12904067	Cm122	Cardiac mass QTL 122		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	33379158	78379158	Rat
2301417	Bp319	Blood pressure QTL 319		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	33379158	78379158	Rat
1331806	Bp229	Blood pressure QTL 229	4.36484		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	48917054	60064728	Rat
12904073	Kidm71	Kidney mass QTL 71		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	33379158	78379158	Rat
1331780	Bp238	Blood pressure QTL 238	3.269		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	48917054	60064728	Rat
1331776	Bp225	Blood pressure QTL 225	2.829		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	31610505	77371277	Rat
631518	Bw11	Body weight QTL 11	2.8		body mass (VT:0001259)	body weight (CMO:0000012)	18	36121626	81121626	Rat
1641923	Colcr8	Colorectal carcinoma resistance QTL 8	3.1	0.0014	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	31990891	76990891	Rat
8694366	Abfw8	Abdominal fat weight QTL 8	6.38	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	18	48915737	86134022	Rat
631509	Sald2	Serum aldosterone level QTL 2	2.9		blood aldosterone amount (VT:0005346)	serum aldosterone level (CMO:0000487)	18	26415821	71415821	Rat
631274	Sprol1	Serum protein level QTL 1	5.3		blood total protein amount (VT:0005567)	serum total protein level (CMO:0000661)	18	31644508	79484311	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	19553532	85493247	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	12066482	57066482	Rat
8694378	Bw157	Body weight QTL 157	3.59	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	18	31990891	76990891	Rat
2303571	Bw92	Body weight QTL 92	3		body mass (VT:0001259)	body weight (CMO:0000012)	18	50795212	86134022	Rat
61429	Cia17	Collagen induced arthritis QTL 17	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	18	31610505	72538878	Rat
7411719	Strs5	Sensitivity to stroke QTL 5	9.4		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	18	52198059	68120379	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
22	12	80	208	91	90	59	151	59	6	472	272	19	187	111	124	31	34	34

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001007759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772159	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB048840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC111678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC127734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC083738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000039177 ⟹ ENSRNOP00000030051

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	52,435,296 - 52,587,297 (-)	Ensembl
mRatBN7.2 Ensembl	18	50,237,230 - 50,389,150 (-)	Ensembl
Rnor_6.0 Ensembl	18	51,844,988 - 51,996,984 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081020 ⟹ ENSRNOP00000071176

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	50,237,308 - 50,363,798 (-)	Ensembl
Rnor_6.0 Ensembl	18	51,844,976 - 52,017,734 (-)	Ensembl

RefSeq Acc Id:

NM_001007759 ⟹ NP_001007760

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	52,435,292 - 52,587,297 (-)	NCBI
mRatBN7.2	18	50,237,218 - 50,389,233 (-)	NCBI
Rnor_6.0	18	51,844,980 - 51,996,984 (-)	NCBI
Rnor_5.0	18	51,040,240 - 51,192,614 (-)	NCBI
RGSC_v3.4	18	52,530,738 - 52,682,742 (-)	RGD
Celera	18	48,380,978 - 48,530,010 (-)	RGD

Sequence:

show sequence

GTCAGCGCGCTCTGGGCGACTGCTGAGCCAGGCGACCGCCGAGCTTGCGGCGATCCCCGTCAGG
TGCCCAGTAAAGCCAATGCGCCCAGGTCCGGCGGGGCAAGAGCAGCCGGCGGTTCCGGGCAACT
TGGGACTGAGGATCTGCAGCAGGGGCGTGGATTTGGCGTCTGGACTGGGCCAGGAGGATGGAAG
TCCTCTATGAGTGTGGAAGCCATTAACAGAGTAATTGCTGTCTGTTGCCATGACAACCAGTCGC
TGCAGTCACCTGCCCGAAGTCTTGCCAGACTGCACCAGCTCAGCTGCGCCTGTGGTGAAGACGG
TGGAGGACTGTGGCAGCCTAGTGAATGGGCAGCCACAGTATGTCATGCAAGTTTCAGCCAAGGA
CGGGCAGCTGCTGTCAACAGTAGTGCGGACTCTTGCCACCCAGAGCCCCTTCAATGACCGGCCA
ATGTGCAGAATCTGCCATGAGGGCAGCAGCCAAGAGGACTTACTCTCTCCATGTGAATGTACTG
GGACCTTGGGGACAATCCATCGGAGCTGCCTGGAGCACTGGCTGTCATCCTCAAATACCAGCTA
CTGTGAACTCTGCCACTTCAGGTTTGCAGTGGAGCGCAAACCCAGGCCGTTAGTGGAGTGGCTT
AGGAACCCTGGCCCCCAGCATGAGAAGCGGACTCTGTTTGGAGACATGGTGTGCTTCTTATTTA
TAACGCCCCTGGCTACCATCTCCGGCTGGCTGTGCCTTCGGGGCGCCGTGGACCACCTGCACTT
CAGTAGTCGACTGGAAGCCGTGGGACTGATTGCTCTCACCGTGGCACTCTTCACGATTTACCTC
TTCTGGACACTAGTGTCATTTAGGTACCACTGTCGATTGTACAATGAATGGCGTCGGACCAATC
AGAGGGTGATTCTCCTCATTCCAAAGTCTGTCAACATCCCTTCTAACCAGCAGTCCTTGCTGGG
GCTCCACTCAGTCAAGAGGAACTCAAAGGAGACAATTGTTTGATGTCTGTGGGGTCAGATGGTG
GACTCGTTGTTGGGGGTTTAGAAGTCTCTGCACTGGGGCCATGCGCTGAGCCACCCCAAAGCCC
TTCCCTCCGTCTTTGGGTCTAAGAACATCTTACCGCATCGCATCGCCTGAGTAAGGAACTCAGC
CAGAAGGAAACAATGCTGTTTGACTTCAAAATCATGGATGCTGCACTCAGATGACACTCGCTAA
GCTGCCAAACATGTCTATCTAGCAGATACTGTAAGGACTTTCTGAACACCTCTCTAACATACGA
GGAAGGTAGTCCTGCTGAGGATGCAATGCAATTCTTCCTTTTTTATTACTATCGCAAATATATA
TATATATAAATGTATAATTTAGATGATAATCAAAATTGAAAAGCCAATGTACAAACTGGTTTCT
TGGTTTAGATGGGTTTTATTTGGGTTAGTTTATTCATTTCCCCGTTTCTACTGTGGATCTTTGG
TGGCTAACTTGAGGGCCCGAATGGTCTTTTTCATCTCTTTTATGTCCCTTATTCAAGGAGACAG
CATAATTACTGCAGAACAAGTCACATTTGAAGGGTGTTTTGTACTAAACCTCATTCAGTTATTC
AGTTTTTAAAAGGGAAAAAAGGTGTGGCAACTCACCACACCACGCGGTGAGCTGTTTACTTAAA
TATTAAGGAGGAAGTCATGGCGAGATGCTCCCTCCTTTCAACTTGTTTGGTACTGACAGCTGAT
AGAAGCTATTTTCTAATAATAAATATCTGGTGTGTGAAAGACAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

hide sequence

RefSeq Acc Id:

XM_006254749 ⟹ XP_006254811

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	52,435,292 - 52,587,321 (-)	NCBI
mRatBN7.2	18	50,237,218 - 50,389,343 (-)	NCBI
Rnor_6.0	18	51,844,980 - 51,998,017 (-)	NCBI
Rnor_5.0	18	51,040,240 - 51,192,614 (-)	NCBI

Sequence:

show sequence

TATGTGTGTGTGTGTGTGTGTGTGGTGTAGTCTTAAAACCTGACTAAAAAGACTATTCTGGCAA
GACTGAATGAAGCAGGGGAAAGCCAACAGTGGTCTAAAGGCTCCCAGTGCACTCCTAACTACCA
GCTATGAGCCGCTTCATGCCTTCATCCTAATCAAGGTTTTCCAAAGGGGAGAGAGGGAAATGGA
GAGTCCGACGGATCTGGCCTGCTCTGCGGTTTTCTGTCCAAGAAGACGGATAGTTTTGGCTTCT
CGATATTCCTGGAGGACCAAGCAGACAGCCACAGAACCCACTGTGGCGGATGGGAAGTGCATGG
GACGCCTTTGGGCATGAGAAGGCTTTTGCTAAAGGTCCCTAACCTTGTGGAAGGAAAAGGAGAG
TCCTGCTTTGTACTTTCCCGGAGGTTGGCTGAGCCAGAGTTCTTGTTTCAAAGACAACCGCCAA
ATCGAGCTTAGAACCGTTTCCAGTGTAGTTGGACCCTTGAGACGCAGACTGTGTGAGTACTCAG
AATCCTCCGGTGGCTGGGGCGCCTTTGGGGCCAAGTTCCTCGCTTCCTATTGGTATGAGGTACG
AGTGTTGCTCTCCACAGCGTGCCCACTCGCGACGGCTCTGGGAACTCCTACAGTCTGTCAGCAA
GAGCCTTTCCTGGTCGCAGCCTCGTTCCCGGGGCGTTCGGGTCCCACTGCATCAGACCACGCAG
GAGCTGCCAGACGCCACCGCCGCCGCCGCCGCCACCGCACTTCACAACTGCCAACTTGCGGGCA
GCTAGAGCGTCTCCGGGCCAACGCTCACCAGCAAGCGATTGGACACCGAGTAGGGGGCAGGACG
ACGCGCTATGCACCTCCCACAGCCTCCAAGGATCCTGGTGCCCTGACTATTGGCTATGGCCTCC
GCCAGTCAAACACTAGTAGCCGCCCCGCCTTATAGGGGCTGGCTCAAGACTGGCCCCGCCCCAG
GGCTCCGCCCCCTTCGGAGCCTAGTCAGCTCTGCGCGGTGTTCCGCCTCATTCGCTGAGCGGGT
CCGTATATTGTCAGCGCGCTCTGGGCGACTGCTGAGCCAGGCGACCGCCGAGCTTGCGGCGATC
CCCGTCAGGTGCCCAGTAAAGCCAATGCGCCCAGGTCCGGCGGGGCAAGAGCAGCCGGCGGTTC
CGGGCAACTTGGGACTGAGGATCTGCAGCAGGGGCGTGGATTTGGCGTCTGGACTGGGCCAGGA
GGCCATTATATGATACAACCGAAAGAGACTGTGTTATGTATGCAGTGACCGGATCCGAAAACCA
GCTCAGAAAAGCCCAATTACACGTAGTATTTCCACCTGGCAGTGATAGTCCACGCCTTTGATCC
CAGCACTTAAGAGACAAAGATGGAAGTCCTCTATGAGTGTGGAAGCCATTAACAGAGTAATTGC
TGTCTGTTGCCATGACAACCAGTCGCTGCAGTCACCTGCCCGAAGTCTTGCCAGACTGCACCAG
CTCAGCTGCGCCTGTGGTGAAGACGGTGGAGGACTGTGGCAGCCTAGTGAATGGGCAGCCACAG
TATGTCATGCAAGTTTCAGCCAAGGACGGGCAGCTGCTGTCAACAGTAGTGCGGACTCTTGCCA
CCCAGAGCCCCTTCAATGACCGGCCAATGTGCAGAATCTGCCATGAGGGCAGCAGCCAAGAGGA
CTTACTCTCTCCATGTGAATGTACTGGGACCTTGGGGACAATCCATCGGAGCTGCCTGGAGCAC
TGGCTGTCATCCTCAAATACCAGCTACTGTGAACTCTGCCACTTCAGGTTTGCAGTGGAGCGCA
AACCCAGGCCGTTAGTGGAGTGGCTTAGGAACCCTGGCCCCCAGCATGAGAAGCGGACTCTGTT
TGGAGACATGGTGTGCTTCTTATTTATAACGCCCCTGGCTACCATCTCCGGCTGGCTGTGCCTT
CGGGGCGCCGTGGACCACCTGCACTTCAGTAGTCGACTGGAAGCCGTGGGACTGATTGCTCTCA
CCGTGGCACTCTTCACGATTTACCTCTTCTGGACACTAGTGTCATTTAGGTACCACTGTCGATT
GTACAATGAATGGCGTCGGACCAATCAGAGGGTGATTCTCCTCATTCCAAAGTCTGTCAACATC
CCTTCTAACCAGCAGTCCTTGCTGGGGCTCCACTCAGTCAAGAGGAACTCAAAGGAGACAATTG
TTTGATGTCTGTGGGGTCAGATGGTGGACTCGTTGTTGGGGGTTTAGAAGTCTCTGCACTGGGG
CCATGCGCTGAGCCACCCCAAAGCCCTTCCCTCCGTCTTTGGGTCTAAGAACATCTTACCGCAT
CGCATCGCCTGAGTAAGGAACTCAGCCAGAAGGAAACAATGCTGTTTGACTTCAAAATCATGGA
TGCTGCACTCAGATGACACTCGCTAAGCTGCCAAACATGTCTATCTAGCAGATACTGTAAGGAC
TTTCTGAACACCTCTCTAACATACGAGGAAGGTAGTCCTGCTGAGGATGCAATGCAATTCTTCC
TTTTTTATTACTATCGCAAATATATATATATATAAATGTATAATTTAGATGATAATCAAAATTG
AAAAGCCAATGTACAAACTGGTTTCTTGGTTTAGATGGGTTTTATTTGGGTTAGTTTATTCATT
TCCCCGTTTCTACTGTGGATCTTTGGTGGCTAACTTGAGGGCCCGAATGGTCTTTTTCATCTCT
TTTATGTCCCTTATTCAAGGAGACAGCATAATTACTGCAGAACAAGTCACATTTGAAGGGTGTT
TTGTACTAAACCTCATTCAGTTATTCAGTTTTTAAAAGGGAAAAAAGGTGTGGCAACTCACCAC
ACCACGCGGTGAGCTGTTTACTTAAATATTAAGGAGGAAGTCATGGCGAGATGCTCCCTCCTTT
CAACTTGTTTGGTACTGACAGCTGATAGAAGCTATTTTCTAATAATAAATATCTGGTGTGTGAA
AGACAA

hide sequence

RefSeq Acc Id:

XM_063277492 ⟹ XP_063133562

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	52,435,292 - 52,587,319 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001007760	(Get FASTA)	NCBI Sequence Viewer
	XP_006254811	(Get FASTA)	NCBI Sequence Viewer
	XP_063133562	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83738	(Get FASTA)	NCBI Sequence Viewer
	BAE47142	(Get FASTA)	NCBI Sequence Viewer
	EDM14500	(Get FASTA)	NCBI Sequence Viewer
	EDM14501	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000030051
	ENSRNOP00000071176.1
GenBank Protein	Q5XIE5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001007760 ⟸ NM_001007759

- UniProtKB:

Q33E96 (UniProtKB/Swiss-Prot), Q5XIE5 (UniProtKB/Swiss-Prot), A0A8L2QGG7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLATQSP
FNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERKPRP
LVEWLRNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAVDHLHFSSRLEAVGLIALTVAL
FTIYLFWTLVSFRYHCRLYNEWRRTNQRVILLIPKSVNIPSNQQSLLGLHSVKRNSKETIV

hide sequence

RefSeq Acc Id:	XP_006254811 ⟸ XM_006254749
- Peptide Label:	isoform X1
- UniProtKB:	Q33E96 (UniProtKB/Swiss-Prot), Q5XIE5 (UniProtKB/Swiss-Prot), A0A8L2QGG7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTTSRCSHLPEVLPDCTSSAAPVVKTVEDCGSLVNGQPQYVMQVSAKDGQLLSTVVRTLATQSP FNDRPMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERKPRP LVEWLRNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAVDHLHFSSRLEAVGLIALTVAL FTIYLFWTLVSFRYHCRLYNEWRRTNQRVILLIPKSVNIPSNQQSLLGLHSVKRNSKETIV hide sequence

Ensembl Acc Id:

ENSRNOP00000071176 ⟸ ENSRNOT00000081020

Ensembl Acc Id:

ENSRNOP00000030051 ⟸ ENSRNOT00000039177

RefSeq Acc Id:	XP_063133562 ⟸ XM_063277492
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIE5 (UniProtKB/Swiss-Prot), Q33E96 (UniProtKB/Swiss-Prot), A0A8L2QGG7 (UniProtKB/TrEMBL)

Protein Domains

RING-CH-type RING-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XIE5-F1-model_v2	AlphaFold	Q5XIE5	1-253	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700793

Promoter ID:

EPDNEW_R11317

Type:

initiation region

Name:

March3_1

Description:

membrane associated ring-CH-type finger 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	51,997,008 - 51,997,068	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359308	AgrOrtholog
BioCyc Gene	G2FUF-7439	BioCyc
Ensembl Genes	ENSRNOG00000023013	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000039177	ENTREZGENE
	ENSRNOT00000081020.2	UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.40.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7191669	IMAGE-MGC_LOAD
InterPro	Znf_RING	UniProtKB/Swiss-Prot
	Znf_RING-CH	UniProtKB/Swiss-Prot
	Znf_RING/FYVE/PHD	UniProtKB/Swiss-Prot
KEGG Report	rno:364878	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94648	IMAGE-MGC_LOAD
NCBI Gene	364878	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER	UniProtKB/Swiss-Prot
	E3 UBIQUITIN-PROTEIN LIGASE MARCHF3	UniProtKB/Swiss-Prot
Pfam	RINGv	UniProtKB/Swiss-Prot
PhenoGen	Marchf3	PhenoGen
PROSITE	ZF_RING_CH	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000023013	RatGTEx
SMART	RINGv	UniProtKB/Swiss-Prot
Superfamily-SCOP	RING/U-box	UniProtKB/Swiss-Prot
UniProt	A0A8L2QGG7	ENTREZGENE, UniProtKB/TrEMBL
	MARH3_RAT	UniProtKB/Swiss-Prot
	Q33E96	ENTREZGENE
	Q5XIE5	ENTREZGENE
UniProt Secondary	Q33E96	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-08-08	Marchf3	membrane associated ring-CH-type finger 3	March3	membrane associated ring-CH-type finger 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-12-02	March3	membrane associated ring-CH-type finger 3	March3	membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-10-05	March3	membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase	March3	membrane-associated ring finger (C3HC4) 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	March3	membrane-associated ring finger (C3HC4) 3	MGC94648	similar to Hypothetical protein MGC48332	Symbol and Name updated	1299863	APPROVED
2005-07-29	MGC94648	similar to Hypothetical protein MGC48332			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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