Septin10 (septin 10) - Rat Genome Database

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Gene: Septin10 (septin 10) Rattus norvegicus
Analyze
Symbol: Septin10
Name: septin 10
RGD ID: 1359307
Description: Predicted to enable GTPase activity and molecular adaptor activity. Predicted to be involved in cytoskeleton-dependent cytokinesis and intracellular protein localization. Predicted to be located in cytoplasm; cytoskeleton; and motile cilium. Predicted to be part of septin complex. Predicted to be active in cell division site; microtubule cytoskeleton; and septin ring. Orthologous to human SEPTIN10 (septin 10); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC309891; Sept10; septin-10; similar to septin 10 isoform 1
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82027,644,862 - 27,737,817 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2027,643,876 - 27,737,902 (-)EnsemblGRCr8
mRatBN7.22027,101,764 - 27,194,997 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2027,101,752 - 27,194,780 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2028,111,876 - 28,204,594 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02027,498,125 - 27,590,843 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02028,242,765 - 28,335,477 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd2027,664,981 - 27,757,699 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive2028,705,707 - 28,798,425 (-)NCBILyon_Normotensive
Lyon_Hypertensive2028,743,718 - 28,836,436 (-)NCBILyon_Hypertensive
F344_StmMcwi2027,605,865 - 27,697,847 (-)NCBIF344_StmMcwi
Rnor_6.02028,722,479 - 28,814,841 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2028,722,580 - 28,814,636 (-)Ensemblrn6Rnor6.0
Rnor_5.02030,530,090 - 30,621,453 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera2028,545,123 - 28,637,169 (-)NCBICelera
Cytogenetic Map20q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334  


Genomics

Comparative Map Data
Septin10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82027,644,862 - 27,737,817 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2027,643,876 - 27,737,902 (-)EnsemblGRCr8
mRatBN7.22027,101,764 - 27,194,997 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2027,101,752 - 27,194,780 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2028,111,876 - 28,204,594 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02027,498,125 - 27,590,843 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02028,242,765 - 28,335,477 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd2027,664,981 - 27,757,699 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive2028,705,707 - 28,798,425 (-)NCBILyon_Normotensive
Lyon_Hypertensive2028,743,718 - 28,836,436 (-)NCBILyon_Hypertensive
F344_StmMcwi2027,605,865 - 27,697,847 (-)NCBIF344_StmMcwi
Rnor_6.02028,722,479 - 28,814,841 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2028,722,580 - 28,814,636 (-)Ensemblrn6Rnor6.0
Rnor_5.02030,530,090 - 30,621,453 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera2028,545,123 - 28,637,169 (-)NCBICelera
Cytogenetic Map20q11NCBI
SEPTIN10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382109,542,799 - 109,613,966 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2109,542,797 - 109,614,157 (-)Ensemblhg38GRCh38
GRCh372110,300,376 - 110,371,543 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362109,657,665 - 109,729,072 (-)NCBIBuild 36Build 36hg18NCBI36
Celera2104,469,162 - 104,540,564 (-)NCBICelera
Cytogenetic Map2q13NCBI
HuRef2103,756,363 - 103,827,838 (-)NCBIHuRef
CHM1_12110,304,564 - 110,375,972 (-)NCBICHM1_1
T2T-CHM13v2.02110,003,863 - 110,075,030 (-)NCBIT2T-CHM13v2.0
Septin10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547012,647,082 - 12,697,616 (-)Ensembl
ChiLan1.0NW_00495547012,647,145 - 12,697,616 (-)NCBIChiLan1.0ChiLan1.0
SEPTIN10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21218,079,968 - 18,151,780 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A18,082,733 - 18,154,821 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A92,027,518 - 92,099,302 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A111,260,194 - 111,309,575 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A111,260,194 - 111,312,188 (-)EnsemblpanPan2panpan1.1
SEPTIN10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11034,248,173 - 34,304,888 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1034,247,773 - 34,304,756 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1034,172,269 - 34,229,516 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01035,101,631 - 35,158,873 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1035,101,490 - 35,158,873 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11034,830,330 - 34,887,630 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01035,111,705 - 35,168,980 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01035,302,461 - 35,360,060 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Septin10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629291,333,756 - 91,373,812 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368291,023,326 - 1,061,214 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049368291,024,201 - 1,064,091 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEPTIN10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl346,483,496 - 46,546,767 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1346,484,138 - 46,546,677 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2347,791,172 - 47,831,289 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SEPTIN10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11413,069,840 - 13,139,429 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1413,069,671 - 13,139,037 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660806,554,349 - 6,623,957 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Septin10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474912,336,540 - 12,392,848 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Septin10
827 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:114
Count of miRNA genes:93
Interacting mature miRNAs:99
Transcripts:ENSRNOT00000071663
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202668936256021148Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804392029865039Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)202074558556021148Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202668936256021148Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202679235356021148Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202668936256021148Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202668936256021148Rat

Markers in Region
RH132077  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22027,134,363 - 27,134,561 (+)MAPPERmRatBN7.2
Rnor_6.02028,755,197 - 28,755,394NCBIRnor6.0
Rnor_5.02030,562,316 - 30,562,513UniSTSRnor5.0
Celera2028,578,092 - 28,578,289UniSTS
Cytogenetic Map20q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 87 59 6 351 187 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000071663   ⟹   ENSRNOP00000064265
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2027,677,136 - 27,737,894 (-)Ensembl
mRatBN7.2 Ensembl2027,101,752 - 27,194,780 (-)Ensembl
Rnor_6.0 Ensembl2028,722,580 - 28,783,589 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000086030   ⟹   ENSRNOP00000073404
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2027,678,719 - 27,737,894 (-)Ensembl
mRatBN7.2 Ensembl2027,134,255 - 27,194,726 (-)Ensembl
Rnor_6.0 Ensembl2028,755,050 - 28,814,636 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112391   ⟹   ENSRNOP00000091271
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2027,678,719 - 27,706,347 (-)Ensembl
mRatBN7.2 Ensembl2027,134,255 - 27,163,296 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000142196   ⟹   ENSRNOP00000103161
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2027,643,876 - 27,737,902 (-)Ensembl
RefSeq Acc Id: NM_001014033   ⟹   NP_001014055
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82027,644,862 - 27,737,814 (-)NCBI
mRatBN7.22027,101,808 - 27,194,765 (-)NCBI
Dahl_SR_JrHsd2027,664,981 - 27,757,699 (-)NCBI
Lyon_Normotensive2028,705,707 - 28,798,425 (-)NCBI
Lyon_Hypertensive2028,743,718 - 28,836,436 (-)NCBI
F344_StmMcwi2027,605,865 - 27,697,847 (-)NCBI
Rnor_6.02028,722,565 - 28,814,611 (-)NCBI
Rnor_5.02030,530,090 - 30,621,453 (-)NCBI
Celera2028,545,123 - 28,637,169 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006256415   ⟹   XP_006256477
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82027,644,862 - 27,737,812 (-)NCBI
mRatBN7.22027,101,764 - 27,194,983 (-)NCBI
Rnor_6.02028,722,479 - 28,814,810 (-)NCBI
Rnor_5.02030,530,090 - 30,621,453 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006256417   ⟹   XP_006256479
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82027,644,862 - 27,737,817 (-)NCBI
mRatBN7.22027,101,823 - 27,194,997 (-)NCBI
Rnor_6.02028,722,580 - 28,814,841 (-)NCBI
Rnor_5.02030,530,090 - 30,621,453 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006256418   ⟹   XP_006256480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82027,677,306 - 27,737,812 (-)NCBI
mRatBN7.22027,134,081 - 27,194,983 (-)NCBI
Rnor_6.02028,755,814 - 28,814,809 (-)NCBI
Rnor_5.02030,530,090 - 30,621,453 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601667   ⟹   XP_017457156
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82027,644,862 - 27,737,807 (-)NCBI
mRatBN7.22027,101,823 - 27,194,983 (-)NCBI
Rnor_6.02028,722,580 - 28,814,810 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039098775   ⟹   XP_038954703
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82027,644,862 - 27,736,550 (-)NCBI
mRatBN7.22027,101,764 - 27,193,695 (-)NCBI
RefSeq Acc Id: XM_039098776   ⟹   XP_038954704
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82027,677,306 - 27,737,806 (-)NCBI
mRatBN7.22027,134,444 - 27,194,736 (-)NCBI
RefSeq Acc Id: XM_039098777   ⟹   XP_038954705
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82027,677,306 - 27,737,817 (-)NCBI
mRatBN7.22027,134,259 - 27,194,774 (-)NCBI
RefSeq Acc Id: XM_063279185   ⟹   XP_063135255
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82027,677,306 - 27,737,807 (-)NCBI
RefSeq Acc Id: NP_001014055   ⟸   NM_001014033
- UniProtKB: Q5PQK1 (UniProtKB/Swiss-Prot),   A0A0H2UI27 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256479   ⟸   XM_006256417
- Peptide Label: isoform X3
- UniProtKB: A6K3U3 (UniProtKB/TrEMBL),   A0A0H2UI27 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256477   ⟸   XM_006256415
- Peptide Label: isoform X1
- UniProtKB: A0A0H2UI27 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256480   ⟸   XM_006256418
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K5F4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457156   ⟸   XM_017601667
- Peptide Label: isoform X2
- UniProtKB: A0A0H2UI27 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000064265   ⟸   ENSRNOT00000071663
Ensembl Acc Id: ENSRNOP00000073404   ⟸   ENSRNOT00000086030
RefSeq Acc Id: XP_038954703   ⟸   XM_039098775
- Peptide Label: isoform X5
- UniProtKB: A0A0H2UI27 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954705   ⟸   XM_039098777
- Peptide Label: isoform X8
- UniProtKB: A0A0G2K5F4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954704   ⟸   XM_039098776
- Peptide Label: isoform X7
- UniProtKB: A0A0G2K5F4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000091271   ⟸   ENSRNOT00000112391
RefSeq Acc Id: XP_063135255   ⟸   XM_063279185
- Peptide Label: isoform X6
- UniProtKB: A0A0G2K5F4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000103161   ⟸   ENSRNOT00000142196
Protein Domains
Septin-type G

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5PQK1-F1-model_v2 AlphaFold Q5PQK1 1-456 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701588
Promoter ID:EPDNEW_R12108
Type:multiple initiation site
Name:Sept10_1
Description:septin 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02028,814,592 - 28,814,652EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359307 AgrOrtholog
BioCyc Gene G2FUF-3778 BioCyc
Ensembl Genes ENSRNOG00000049507 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000071663 ENTREZGENE
  ENSRNOT00000071663.3 UniProtKB/Swiss-Prot
  ENSRNOT00000086030 ENTREZGENE
  ENSRNOT00000112391 ENTREZGENE
  ENSRNOT00000142196 ENTREZGENE
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7133379 IMAGE-MGC_LOAD
InterPro G_SEPTIN_dom UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
  Septin UniProtKB/Swiss-Prot
KEGG Report rno:309891 UniProtKB/Swiss-Prot
MGC_CLONE MGC:95253 IMAGE-MGC_LOAD
NCBI Gene 309891 ENTREZGENE
PANTHER SEPTIN UniProtKB/Swiss-Prot
Pfam Septin UniProtKB/Swiss-Prot
PhenoGen Septin10 PhenoGen
PIRSF Septin UniProtKB/Swiss-Prot
PROSITE G_SEPTIN UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000049507 RatGTEx
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt A0A0G2K5F4 ENTREZGENE, UniProtKB/TrEMBL
  A0A0H2UI27 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AFA1_RAT UniProtKB/TrEMBL
  A0ABK0L2N2_RAT UniProtKB/TrEMBL
  A6K3U3 ENTREZGENE, UniProtKB/TrEMBL
  Q5PQK1 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-05 Septin10  septin 10  Sept10  septin 10  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Sept10  septin 10  LOC309891  similar to septin 10 isoform 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 LOC309891  similar to septin 10 isoform 1      Symbol and Name status set to provisional 70820 PROVISIONAL