Ghitm (growth hormone inducible transmembrane protein) - Rat Genome Database

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Gene: Ghitm (growth hormone inducible transmembrane protein) Rattus norvegicus
Analyze
Symbol: Ghitm
Name: growth hormone inducible transmembrane protein
RGD ID: 1359301
Description: Predicted to enable calcium channel activity and calcium:proton antiporter activity. Predicted to be involved in inner mitochondrial membrane organization; monoatomic cation transmembrane transport; and negative regulation of release of cytochrome c from mitochondria. Predicted to be located in endoplasmic reticulum membrane and mitochondrial membrane. Predicted to be active in mitochondrial inner membrane. Orthologous to human GHITM (growth hormone inducible transmembrane protein); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: growth hormone-inducible transmembrane protein; MGC94737; MICS1; mitochondrial morphology and cristae structure 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81612,907,062 - 12,918,149 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1612,905,806 - 12,918,123 (-)EnsemblGRCr8
mRatBN7.21612,885,551 - 12,897,887 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1612,885,553 - 12,897,879 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1612,831,674 - 12,842,769 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01613,976,415 - 13,987,510 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01612,824,172 - 12,835,267 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01614,370,269 - 14,382,647 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1614,371,531 - 14,382,641 (-)Ensemblrn6Rnor6.0
Rnor_5.01614,272,787 - 14,285,160 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41613,327,337 - 13,338,420 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1613,144,969 - 13,156,052 (-)NCBICelera
RGSC_v3.11613,327,335 - 13,338,418 (-)NCBI
Cytogenetic Map16p14NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
(S)-nicotine  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3-dimethoxynaphthalene-1,4-dione  (ISO)
2-hydroxypropanoic acid  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
acetylsalicylic acid  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
antimony(0)  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
clozapine  (ISO)
cobalt dichloride  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dibenzo[a,l]pyrene  (ISO)
dibutyl phthalate  (EXP,ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
finasteride  (EXP)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
inulin  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
leflunomide  (EXP)
lithium atom  (ISO)
lithium hydride  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methapyrilene  (EXP)
N,N-diethyl-m-toluamide  (EXP)
N-methyl-4-phenylpyridinium  (EXP)
nefazodone  (EXP)
nicotine  (ISO)
nimesulide  (EXP)
ozone  (ISO)
paracetamol  (EXP)
paraquat  (EXP)
pentane-2,3-dione  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
permethrin  (EXP)
pirinixic acid  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
sodium arsenite  (ISO)
sulindac  (EXP)
sunitinib  (ISO)
T-2 toxin  (EXP)
tamoxifen  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Identification, isolation, and cloning of growth hormone (GH)-inducible interscapular brown adipose complementary deoxyribonucleic acid from GH antagonist mice. Li Y, etal., Endocrinology 2001 Jul;142(7):2937-45.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:18614015   PMID:19056867   PMID:23376485  


Genomics

Comparative Map Data
Ghitm
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81612,907,062 - 12,918,149 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1612,905,806 - 12,918,123 (-)EnsemblGRCr8
mRatBN7.21612,885,551 - 12,897,887 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1612,885,553 - 12,897,879 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1612,831,674 - 12,842,769 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01613,976,415 - 13,987,510 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01612,824,172 - 12,835,267 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01614,370,269 - 14,382,647 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1614,371,531 - 14,382,641 (-)Ensemblrn6Rnor6.0
Rnor_5.01614,272,787 - 14,285,160 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41613,327,337 - 13,338,420 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1613,144,969 - 13,156,052 (-)NCBICelera
RGSC_v3.11613,327,335 - 13,338,418 (-)NCBI
Cytogenetic Map16p14NCBI
GHITM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381084,139,509 - 84,153,568 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1084,139,482 - 84,154,841 (+)Ensemblhg38GRCh38
GRCh371085,899,265 - 85,913,324 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361085,889,165 - 85,903,291 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341085,889,237 - 85,903,291NCBI
Celera1079,894,096 - 79,908,234 (+)NCBICelera
Cytogenetic Map10q23.1NCBI
HuRef1079,745,159 - 79,759,301 (+)NCBIHuRef
CHM1_11086,180,946 - 86,195,083 (+)NCBICHM1_1
T2T-CHM13v2.01085,017,654 - 85,031,724 (+)NCBIT2T-CHM13v2.0
Ghitm
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391436,842,401 - 36,857,279 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1436,842,049 - 36,857,229 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381437,120,444 - 37,135,322 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1437,120,092 - 37,135,272 (-)Ensemblmm10GRCm38
MGSCv371437,934,004 - 37,948,452 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361436,032,558 - 36,047,006 (-)NCBIMGSCv36mm8
Celera1433,331,790 - 33,346,360 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1421.29NCBI
Ghitm
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555103,674,303 - 3,689,449 (+)Ensembl
ChiLan1.0NW_0049555103,674,303 - 3,688,747 (+)NCBIChiLan1.0ChiLan1.0
GHITM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2896,117,764 - 96,133,798 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11096,123,812 - 96,139,118 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01080,553,711 - 80,567,426 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11084,123,467 - 84,137,219 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1084,123,467 - 84,137,219 (+)EnsemblpanPan2panpan1.1
GHITM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1432,402,210 - 32,417,905 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl432,402,299 - 32,416,816 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha432,387,947 - 32,403,594 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0432,717,915 - 32,733,649 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl432,718,015 - 32,742,217 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1432,580,655 - 32,596,363 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0432,772,867 - 32,788,570 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0433,269,168 - 33,285,122 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ghitm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721346,306,674 - 46,319,785 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936767769,155 - 785,899 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936767769,189 - 782,279 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GHITM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1485,385,868 - 85,401,670 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11485,385,578 - 85,401,680 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21492,190,430 - 92,206,533 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GHITM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1947,683,075 - 47,697,855 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl947,679,764 - 47,697,834 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660487,859,971 - 7,874,658 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ghitm
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248412,860,434 - 2,875,022 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248412,861,123 - 2,875,054 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ghitm
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11315,594,004 - 15,605,219 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ghitm
174 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:151
Count of miRNA genes:122
Interacting mature miRNAs:130
Transcripts:ENSRNOT00000018723
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16423421216278352Rat
1549842Bp248Blood pressure QTL 2480.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1638712345387123Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133425095Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139568015Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16423421253708481Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16474422249744222Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16423421216278352Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16126734272Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126734272Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16435482249354822Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)1638712345387123Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16423421249757901Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421266955197Rat
737825Alc13Alcohol consumption QTL 134.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421216061395Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139568015Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683908666195506Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338679049757901Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338679026128267Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683908666195506Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683908666195506Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126734272Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16423433317730812Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683908652786090Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683908666195506Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16330168348301683Rat

Markers in Region
RH141018  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0763,956,643 - 63,956,842NCBIRnor5.0
Rnor_5.07101,783,214 - 101,783,401NCBIRnor5.0
RGSC_v3.4797,765,370 - 97,765,556UniSTSRGSC3.4
RGSC_v3.4760,943,285 - 60,943,483UniSTSRGSC3.4
Celera789,175,490 - 89,175,676UniSTS
Celera753,898,540 - 53,898,738UniSTS
RH 3.4 Map7504.9UniSTS
Cytogenetic Map16p14UniSTS
Cytogenetic Map7q33UniSTS
AA799642  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21612,888,220 - 12,888,346 (+)MAPPERmRatBN7.2
Rnor_6.01614,372,949 - 14,373,074NCBIRnor6.0
Rnor_5.01614,275,467 - 14,275,592UniSTSRnor5.0
RGSC_v3.41613,328,754 - 13,328,879UniSTSRGSC3.4
Celera1613,146,386 - 13,146,511UniSTS
RH 3.4 Map7505.6UniSTS
Cytogenetic Map16p14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000018723   ⟹   ENSRNOP00000018723
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1612,887,900 - 12,897,864 (-)Ensembl
Rnor_6.0 Ensembl1614,371,531 - 14,382,641 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106368   ⟹   ENSRNOP00000077387
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1612,905,806 - 12,918,123 (-)Ensembl
mRatBN7.2 Ensembl1612,885,553 - 12,897,879 (-)Ensembl
RefSeq Acc Id: NM_001005908   ⟹   NP_001005908
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81612,907,062 - 12,918,145 (-)NCBI
mRatBN7.21612,886,804 - 12,897,887 (-)NCBI
Rnor_6.01614,371,532 - 14,382,615 (-)NCBI
Rnor_5.01614,272,787 - 14,285,160 (-)NCBI
RGSC_v3.41613,327,337 - 13,338,420 (-)RGD
Celera1613,144,969 - 13,156,052 (-)RGD
Sequence:
RefSeq Acc Id: XM_006252786   ⟹   XP_006252848
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81612,907,065 - 12,918,149 (-)NCBI
mRatBN7.21612,885,551 - 12,897,865 (-)NCBI
Rnor_6.01614,370,269 - 14,382,647 (-)NCBI
Rnor_5.01614,272,787 - 14,285,160 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001005908   ⟸   NM_001005908
- UniProtKB: Q5XIA8 (UniProtKB/Swiss-Prot),   A6K9J5 (UniProtKB/TrEMBL),   A0A8L2Q9B8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252848   ⟸   XM_006252786
- Peptide Label: isoform X1
- UniProtKB: Q5XIA8 (UniProtKB/Swiss-Prot),   A6K9J5 (UniProtKB/TrEMBL),   A0A8L2Q9B8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000018723   ⟸   ENSRNOT00000018723
Ensembl Acc Id: ENSRNOP00000077387   ⟸   ENSRNOT00000106368

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIA8-F1-model_v2 AlphaFold Q5XIA8 1-346 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699969
Promoter ID:EPDNEW_R10490
Type:initiation region
Name:Ghitm_1
Description:growth hormone inducible transmembrane protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01614,382,624 - 14,382,684EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359301 AgrOrtholog
BioCyc Gene G2FUF-11991 BioCyc
Ensembl Genes ENSRNOG00000013961 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000106368 ENTREZGENE
  ENSRNOT00000106368.1 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7193683 IMAGE-MGC_LOAD
InterPro Bax_inhibitor_1-related UniProtKB/Swiss-Prot
  GHITM UniProtKB/Swiss-Prot
KEGG Report rno:290596 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94737 IMAGE-MGC_LOAD
NCBI Gene 290596 ENTREZGENE
PANTHER GROWTH HORMONE-INDUCIBLE TRANSMEMBRANE PROTEIN UniProtKB/Swiss-Prot
  PTHR23291 UniProtKB/Swiss-Prot
Pfam Bax1-I UniProtKB/Swiss-Prot
PhenoGen Ghitm PhenoGen
RatGTEx ENSRNOG00000013961 RatGTEx
UniProt A0A8L2Q9B8 ENTREZGENE
  A6K9J3_RAT UniProtKB/TrEMBL
  A6K9J4_RAT UniProtKB/TrEMBL
  A6K9J5 ENTREZGENE, UniProtKB/TrEMBL
  A6K9J6_RAT UniProtKB/TrEMBL
  A6K9J7_RAT UniProtKB/TrEMBL
  A6K9J8_RAT UniProtKB/TrEMBL
  GHITM_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Ghitm  growth hormone inducible transmembrane protein      Symbol and Name status set to approved 1299863 APPROVED
2005-07-29 Ghitm  growth hormone inducible transmembrane protein      Symbol and Name status set to provisional 70820 PROVISIONAL