Rsl1d1 (ribosomal L1 domain containing 1)

Gene: Rsl1d1 (ribosomal L1 domain containing 1) Rattus norvegicus

Analyze

Symbol:

Rsl1d1

Name:

ribosomal L1 domain containing 1

RGD ID:

1359295

Description:

Predicted to enable mRNA 3'-UTR binding activity and mRNA 5'-UTR binding activity. Predicted to be involved in regulation of apoptotic process and regulation of cellular senescence. Predicted to act upstream of or within regulation of protein localization. Predicted to be located in chromosome and nucleolus. Orthologous to human RSL1D1 (ribosomal L1 domain containing 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Ac1158; cellular senescence inhibited; Csig; LOC302898; ribosomal L1 domain containing 1-like 1; ribosomal L1 domain-containing protein 1; Rsl1d1l1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	4,931,839 - 4,943,726 (+)	NCBI		GRCr8
mRatBN7.2	10	4,424,868 - 4,436,753 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	4,397,821 - 4,439,593 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	9,121,533 - 9,133,419 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	8,642,624 - 8,654,508 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	4,280,873 - 4,292,760 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	4,375,329 - 4,387,195 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	4,447,275 - 4,458,623 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	10	4,487,882 - 4,499,230 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	10	4,356,915 - 4,390,030 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	3,214,338 - 3,327,890 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	4,284,439 - 4,326,282 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	3,421,631 - 3,463,400 (+)	NCBI		Celera
Cytogenetic Map	10	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-demecolcine (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amphotericin B (ISO)

Aroclor 1254 (ISO)

arsenous acid (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bleomycin A5 (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

carbon nanotube (ISO)

chloroacetaldehyde (ISO)

chromium(6+) (ISO)

cidofovir anhydrous (ISO)

cisplatin (ISO)

clofibrate (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

cyclosporin A (ISO)

deoxynivalenol (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

furan (EXP)

hypochlorous acid (ISO)

ibuprofen (ISO)

indometacin (ISO)

inulin (ISO)

ivermectin (ISO)

metformin (EXP)

methyl methanesulfonate (ISO)

N-methyl-4-phenylpyridinium (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

potassium chromate (ISO)

quercetin (ISO)

quinolin-8-ol (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

tamoxifen (ISO)

tert-butyl hydroperoxide (ISO)

testosterone enanthate (ISO)

tetrachloromethane (EXP,ISO)

thapsigargin (ISO)

thioacetamide (EXP)

Tributyltin oxide (ISO)

trichloroethene (EXP)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

maturation of LSU-rRNA (IBA)

maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (IBA)

regulation of apoptotic process (ISO)

regulation of cellular senescence (ISO)

regulation of protein localization (ISO)

Cellular Component

90S preribosome (IBA)

chromosome (ISO)

cytosolic large ribosomal subunit (IBA)

nucleolus (IBA,ISO)

ribonucleoprotein complex (IEA)

Molecular Function

mRNA 3'-UTR binding (ISO)

mRNA 5'-UTR binding (ISO)

protein binding (ISO)

RNA binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:16210410	PMID:16213212	PMID:17158916	PMID:18678645	PMID:21452304	PMID:22658674	PMID:22681889	PMID:25468996	PMID:35659652

Genomics

Comparative Map Data

Rsl1d1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	4,931,839 - 4,943,726 (+)	NCBI		GRCr8
mRatBN7.2	10	4,424,868 - 4,436,753 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	4,397,821 - 4,439,593 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	9,121,533 - 9,133,419 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	8,642,624 - 8,654,508 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	4,280,873 - 4,292,760 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	4,375,329 - 4,387,195 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	4,447,275 - 4,458,623 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	10	4,487,882 - 4,499,230 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	10	4,356,915 - 4,390,030 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	3,214,338 - 3,327,890 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	4,284,439 - 4,326,282 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	3,421,631 - 3,463,400 (+)	NCBI		Celera
Cytogenetic Map	10	q11	NCBI

RSL1D1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	11,833,850 - 11,851,542 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	11,833,850 - 11,851,580 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	11,927,707 - 11,945,399 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	11,835,554 - 11,852,943 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	11,838,711 - 11,852,896	NCBI
Celera	16	12,102,372 - 12,119,761 (-)	NCBI		Celera
Cytogenetic Map	16	p13.13	NCBI
HuRef	16	11,844,751 - 11,862,142 (-)	NCBI		HuRef
CHM1_1	16	11,927,990 - 11,945,394 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	11,869,901 - 11,887,593 (-)	NCBI		T2T-CHM13v2.0

Rsl1d1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	11,010,901 - 11,021,156 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	11,010,834 - 11,021,195 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	11,193,037 - 11,203,292 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	11,192,970 - 11,203,331 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	11,193,130 - 11,203,385 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	11,106,615 - 11,116,870 (-)	NCBI		MGSCv36	mm8
Celera	16	11,824,705 - 11,834,960 (-)	NCBI		Celera
Cytogenetic Map	16	A1	NCBI
cM Map	16	6.37	NCBI

Rsl1d1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	6,748,267 - 6,764,650 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	6,749,038 - 6,764,461 (+)	NCBI	ChiLan1.0	ChiLan1.0

RSL1D1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	12,383,746 - 12,398,070 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	16,151,425 - 16,168,804 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	10,776,243 - 10,790,280 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	12,001,209 - 12,015,100 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	12,001,214 - 12,015,100 (-)	Ensembl	panpan1.1		panPan2

RSL1D1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	30,982,391 - 30,995,137 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	30,982,441 - 30,995,099 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	32,362,765 - 32,375,476 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	31,160,236 - 31,172,984 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	31,160,320 - 31,173,842 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	30,974,637 - 30,987,374 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	30,849,091 - 30,861,781 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	31,272,341 - 31,285,124 (+)	NCBI		UU_Cfam_GSD_1.0

Rsl1d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	111,767,815 - 111,776,786 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936530	9,612,912 - 9,622,308 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936530	9,613,256 - 9,622,005 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RSL1D1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	31,278,852 - 31,293,246 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	31,278,394 - 31,291,205 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

RSL1D1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	11,307,508 - 11,319,199 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666068	18,827,948 - 18,842,655 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rsl1d1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624782	6,456,742 - 6,472,867 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624782	6,456,641 - 6,473,360 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rsl1d1
89 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	55
Count of miRNA genes:	49
Interacting mature miRNAs:	50
Transcripts:	ENSRNOT00000044593
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	1	24158324	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35225947	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38328221	Rat
7411611	Foco17	Food consumption QTL 17	18.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	1	42315980	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	418344	45418344	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	743364	63851208	Rat
1549898	Neuinf3	Neuroinflammation QTL 3	26.4		nervous system integrity trait (VT:0010566)	MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio (CMO:0001980)	10	3406320	5387112	Rat

Markers in Region

RH133814

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	4,362,126 - 4,362,333 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	4,411,123 - 4,411,329	NCBI	Rnor6.0
Rnor_6.0	10	4,312,651 - 4,312,857	NCBI	Rnor6.0
Rnor_5.0	10	3,178,722 - 3,178,928	UniSTS	Rnor5.0
Rnor_5.0	10	3,277,052 - 3,277,258	UniSTS	Rnor5.0
RGSC_v3.4	10	4,248,747 - 4,248,953	UniSTS	RGSC3.4
Celera	10	3,385,939 - 3,386,145	UniSTS
Cytogenetic Map	10	q11	UniSTS

WI-19180

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	4,396,780 - 4,397,013 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	4,445,775 - 4,446,007	NCBI	Rnor6.0
Rnor_6.0	10	4,347,227 - 4,347,459	NCBI	Rnor6.0
Rnor_5.0	10	3,213,298 - 3,213,530	UniSTS	Rnor5.0
Rnor_5.0	10	3,311,704 - 3,311,936	UniSTS	Rnor5.0
RGSC_v3.4	10	4,283,399 - 4,283,631	UniSTS	RGSC3.4
Celera	10	3,420,591 - 3,420,823	UniSTS
Cytogenetic Map	10	q11	UniSTS

RH128035

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	4,396,936 - 4,397,138 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	4,445,931 - 4,446,132	NCBI	Rnor6.0
Rnor_6.0	10	4,347,383 - 4,347,584	NCBI	Rnor6.0
Rnor_5.0	10	3,213,454 - 3,213,655	UniSTS	Rnor5.0
Rnor_5.0	10	3,311,860 - 3,312,061	UniSTS	Rnor5.0
RGSC_v3.4	10	4,283,555 - 4,283,756	UniSTS	RGSC3.4
Celera	10	3,420,747 - 3,420,948	UniSTS
Cytogenetic Map	10	q11	UniSTS

RH130073

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	4,400,764 - 4,400,954 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	4,351,211 - 4,351,400	NCBI	Rnor6.0
Rnor_5.0	10	3,217,282 - 3,217,471	UniSTS	Rnor5.0
RGSC_v3.4	10	4,287,383 - 4,287,572	UniSTS	RGSC3.4
Celera	10	3,424,575 - 3,424,764	UniSTS
Cytogenetic Map	10	q11	UniSTS

RH130426

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	4,413,951 - 4,414,101 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	4,476,930 - 4,477,079	NCBI	Rnor6.0
Rnor_6.0	10	4,364,413 - 4,364,562	NCBI	Rnor6.0
Rnor_5.0	10	3,230,484 - 3,230,633	UniSTS	Rnor5.0
RGSC_v3.4	10	4,300,644 - 4,300,793	UniSTS	RGSC3.4
Celera	10	3,437,762 - 3,437,911	UniSTS
Cytogenetic Map	10	q11	UniSTS

RH133062

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	10	3,252,937 - 3,253,140	UniSTS	Rnor5.0
Rnor_5.0	10	3,324,725 - 3,324,928	UniSTS	Rnor5.0
RGSC_v3.4	10	4,323,117 - 4,323,320	UniSTS	RGSC3.4
Celera	10	3,460,235 - 3,460,438	UniSTS
Cytogenetic Map	10	q11	UniSTS

RH134253

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	10	3,312,796 - 3,312,981	UniSTS	Rnor5.0
Rnor_5.0	10	3,241,028 - 3,241,213	UniSTS	Rnor5.0
RGSC_v3.4	10	4,311,188 - 4,311,373	UniSTS	RGSC3.4
Celera	10	3,448,306 - 3,448,491	UniSTS
RH 3.4 Map	10	41.3	UniSTS
Cytogenetic Map	10	q11	UniSTS

RH135149

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	4,398,617 - 4,398,833 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	4,349,064 - 4,349,279	NCBI	Rnor6.0
Rnor_5.0	10	3,215,135 - 3,215,350	UniSTS	Rnor5.0
RGSC_v3.4	10	4,285,236 - 4,285,451	UniSTS	RGSC3.4
Celera	10	3,422,428 - 3,422,643	UniSTS
Cytogenetic Map	10	q11	UniSTS

RH139401

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	10	3,253,110 - 3,253,182	NCBI	Rnor5.0
Rnor_5.0	10	3,324,898 - 3,324,970	NCBI	Rnor5.0
Rnor_5.0	X	9,363,878 - 9,363,950	NCBI	Rnor5.0
RGSC_v3.4	10	4,323,291 - 4,323,362	UniSTS	RGSC3.4
RGSC_v3.4	X	19,645,808 - 19,645,879	UniSTS	RGSC3.4
Celera	10	3,460,409 - 3,460,480	UniSTS
Celera	X	8,339,703 - 8,339,774	UniSTS
Cytogenetic Map	10	q11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium
Low	1	13	34	18	19	18	8	9	54	21	22	11	8
Below cutoff	2	30	23	23		23		2	20	14	19

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001329198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000044593 ⟹ ENSRNOP00000042092

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	4,397,821 - 4,439,593 (+)	Ensembl
Rnor_6.0 Ensembl	10	4,356,915 - 4,390,030 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000084043 ⟹ ENSRNOP00000070538

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	4,424,848 - 4,436,742 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000087196 ⟹ ENSRNOP00000068910

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	4,424,848 - 4,436,251 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000098018 ⟹ ENSRNOP00000077646

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	4,397,821 - 4,439,593 (+)	Ensembl

RefSeq Acc Id:

NM_001329198 ⟹ NP_001316127

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	4,931,839 - 4,943,726 (+)	NCBI
mRatBN7.2	10	4,424,868 - 4,436,753 (+)	NCBI
Rnor_6.0	10	4,375,329 - 4,387,195 (+)	NCBI

Sequence:

show sequence

GGGGCTTCGCGTGCGCAGGCATTCTGACTCCTGAATTCCACACGAGGCGGCATGAAGTGCTTAG
CGTCCGAGTCTCCCGATGCCTCGGCCGCTACGGCGACCACCACCGAGGTGCAAGCGGAACCGAC
CGCTCTTGAACAGCTGGACAGAGAGCAGATAAGAAAGGCAGTAGAAGTTCTGTTTGATAACTCC
AAGTCCAGAAAAAATAATGAATTGCTGTTGAATGGGAGTGAAAATCTGTTTTTAATGGTGATAC
TATGGAAAATTCCAAAGAAAGAACTTAGGATCAGAGTGTCTTTGCCTCATAGCATCCTCTCAGA
ATCCTCAGAAGTCTGTCTGTTTACCAAAGATGAATGTGATTCACCTGAACAGACAGAGGGTTTC
TATAAAAAGCTTTTGAAAAAGCATGGAGTAAACACTATCTCTCAGATTATCCCCTTTAAGACGT
TAAAAACAGAATATAAAGCCTATGAAGCCAAGCTCCGCCTCCTGGGTAGCTTTGATGTCTTTAT
TGCTGATGAACGAATCCGACGGCATTTGCCCACACACATAGGAAGGCATTTCTATCAGAGGAAG
AAAGTTCCAGTATCTGTAAACCTTCTGGCAAAGAATCTGTCCAAAGAGATTAACCGAACTATCA
CAGGGACCGTCTTAAACATCTCTAAGCGTGGTTCTTGCAGTACTATCCGTATTGGTCACACTGG
AATGGAGATTCAGCACATCATTGAAAACATCCTGACTGTCTCAGAAATGCTTTCAGAAAAATTG
CCAGAGAAATGGCAGAGTGTGAAACTCCTATTCCTGAAAACTGAGAAGTCGGTTTCCCTTCCTA
TCTTTTCCTCGTTTGTCACATCTCAGGACGAAAACAGCGCTTCCTTCCGTGGTCTGAAGAAACA
GGAACCAAAGAAAAGAAGGAAGCATGAAAAACAAAAGTTGAAGAAGGAAAGCAAAATGTTAAAG
AAGAAATCCAAGAAGGCTACATCTCTTTTAACTCAAGGTGGCTTAGTTAGCAGTGCTCCAGCAA
AGGGCCCGGGAGCCCAGAAGAAAAGGACCAGCAAGGCCAGCACACAGCCGAAAGTTACAGAGGA
GTATGAAGAAACAATTCCCCAACTGGTACCAATAGGAGAAACTCCGGATAAAGAAAATATGAAG
ATGCAAGAAAATATCACAGGGAAGAAGTCTCCAAAATCGAAGTCTGATCCAAGAACCCCTCAGG
GTAAAAAAAGGAAGGCCTTACCGGCTACAGAGACTCCAGAAGCCTCAGATCCTGGGATCTCAGG
GAAGAAACAAAAAAAGGATGTGCGGGAATTCAGAAAGCCAGGGGCCAAGTCCTTCTCTACTCCC
ATGAAATCTGGAAAGAAAGCTTCCAACACTCCCAGAGACAAAAAAACCCAGGCTGCCCACTCAA
ACTAGAATTAGTGCATTTGGCATAAAAGACATCAGAGTTAACAAGAGCTTTTCAAGAATATTTA
GACAGGGCGTGCTGGCGTTTGTGTGTGTGCCCACGCACGCACGCACGCACGCACGCACGGTGGA
ATGCAGAGATAGGCAGATGTGTATGAGTTTGAGGACAACCTAGTTGTCTACAAAGGGGTCACCA
AGATTCATTCTTTAAAGGGCAGATTTAAGTCCTGGGCTTGGTGGTATAACACTTTTGACAGCAA
ATGCAAGATCCTGGCCTTACTACCTAGAGCTGTCAAAGGAAAAAAGATAAACCCCACACAAGAA
AAGGTACTCTGCTGTTTATTCCATCACAGCGTTTTTCAACAAGGAGTCCAGGACTTAAATGGTT
TTTGAGAAGTTTCTGTGGGTGCCTCTGAAATAAATATTTTTGTTGTAAAAACCAGGGGTTTCAG
GCACAATCTTTTTAAATTGTTCAGTGTATTTCCTGATGCTTCTGTACATTTGCTTTTTTTGAAA
TTAAACTTACATCCCTTCTGGGTAGACGCAC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001316127	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000042092.2
	ENSRNOP00000068910.2
	ENSRNOP00000070538
	ENSRNOP00000070538.2
	ENSRNOP00000077646.1

RefSeq Acc Id:

NP_001316127 ⟸ NM_001329198

- UniProtKB:

A0A0G2JY68 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKCLASESPDASAATATTTEVQAEPTALEQLDREQIRKAVEVLFDNSKSRKNNELLLNGSENLF
LMVILWKIPKKELRIRVSLPHSILSESSEVCLFTKDECDSPEQTEGFYKKLLKKHGVNTISQII
PFKTLKTEYKAYEAKLRLLGSFDVFIADERIRRHLPTHIGRHFYQRKKVPVSVNLLAKNLSKEI
NRTITGTVLNISKRGSCSTIRIGHTGMEIQHIIENILTVSEMLSEKLPEKWQSVKLLFLKTEKS
VSLPIFSSFVTSQDENSASFRGLKKQEPKKRRKHEKQKLKKESKMLKKKSKKATSLLTQGGLVS
SAPAKGPGAQKKRTSKASTQPKVTEEYEETIPQLVPIGETPDKENMKMQENITGKKSPKSKSDP
RTPQGKKRKALPATETPEASDPGISGKKQKKDVREFRKPGAKSFSTPMKSGKKASNTPRDKKTQ
AAHSN

hide sequence

RefSeq Acc Id:

ENSRNOP00000042092 ⟸ ENSRNOT00000044593

RefSeq Acc Id:

ENSRNOP00000068910 ⟸ ENSRNOT00000087196

RefSeq Acc Id:

ENSRNOP00000070538 ⟸ ENSRNOT00000084043

RefSeq Acc Id:

ENSRNOP00000077646 ⟸ ENSRNOT00000098018

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0RCH8-F1-model_v2	AlphaFold	M0RCH8	1-464	view protein structure
AF-Q7TQ86-F1-model_v2	AlphaFold	Q7TQ86	1-540	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359295	AgrOrtholog
BioCyc Gene	G2FUF-26163	BioCyc
Ensembl Genes	ENSRNOG00000032439	Ensembl, UniProtKB/TrEMBL
	ENSRNOG00000069630	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000044593.5	UniProtKB/TrEMBL
	ENSRNOT00000084043	ENTREZGENE
	ENSRNOT00000084043.2	UniProtKB/TrEMBL
	ENSRNOT00000087196.2	UniProtKB/TrEMBL
	ENSRNOT00000098018.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1330.30	UniProtKB/TrEMBL
	3.30.190.20	UniProtKB/TrEMBL
	3.40.50.790	UniProtKB/TrEMBL
InterPro	L30e-like	UniProtKB/TrEMBL
	Ribosomal_L1-like	UniProtKB/TrEMBL
	Ribosomal_L1/biogenesis	UniProtKB/TrEMBL
	Ribosomal_L1_3-a/b-sand	UniProtKB/TrEMBL
	Ribosomal_L7A/L8	UniProtKB/TrEMBL
NCBI Gene	Rsl1d1	ENTREZGENE
PANTHER	RIBOSOMAL L1 DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	UniProtKB/TrEMBL
Pfam	Ribosomal_L1	UniProtKB/TrEMBL
PhenoGen	Rsl1d1	PhenoGen
PRINTS	RIBOSOMALL7A	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000032439	RatGTEx
	ENSRNOG00000069630	RatGTEx
Superfamily-SCOP	SSF56808	UniProtKB/TrEMBL
UniProt	A0A0G2JU03_RAT	UniProtKB/TrEMBL
	A0A0G2JY68	ENTREZGENE, UniProtKB/TrEMBL
	Q7TQ86_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-02-25	Rsl1d1	ribosomal L1 domain containing 1	Rsl1d1l1	ribosomal L1 domain containing 1-like 1	Data merged from RGD:9161298	737654	PROVISIONAL
2014-08-25	Rsl1d1l1	ribosomal L1 domain containing 1-like 1			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-03-04	Rsl1d1	ribosomal L1 domain containing 1	LOC302898	Ac1158	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-29	LOC302898	Ac1158			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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