Chpt1 (choline phosphotransferase 1) - Rat Genome Database

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Gene: Chpt1 (choline phosphotransferase 1) Rattus norvegicus
Analyze
Symbol: Chpt1
Name: choline phosphotransferase 1
RGD ID: 1359283
Description: Predicted to enable diacylglycerol cholinephosphotransferase activity. Predicted to be involved in platelet activating factor biosynthetic process. Predicted to act upstream of or within phosphatidylcholine biosynthetic process. Predicted to be located in cytoplasm; endomembrane system; and membrane. Predicted to be active in Golgi membrane and endoplasmic reticulum membrane. Orthologous to human CHPT1 (choline phosphotransferase 1); PARTICIPATES IN glycerophospholipid metabolic pathway; lamivudine pharmacokinetics pathway; ether lipid metabolic pathway; INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cholinephosphotransferase 1; cholinephosphotransferase 1 alpha; diacylglycerol cholinephosphotransferase 1; MGC95241; similar to choline phosphotransferase 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8724,753,880 - 24,802,529 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl724,750,343 - 24,802,521 (-)EnsemblGRCr8
mRatBN7.2722,866,455 - 22,915,111 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl722,863,027 - 22,915,103 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx724,879,628 - 24,909,697 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0727,042,320 - 27,072,391 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0726,819,370 - 26,849,439 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0729,019,518 - 29,070,928 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl729,043,916 - 29,070,928 (-)Ensemblrn6Rnor6.0
Rnor_5.0729,126,760 - 29,177,859 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4725,171,417 - 25,198,384 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera720,042,608 - 20,074,943 (-)NCBICelera
RGSC_v3.1725,191,687 - 25,218,655 (-)NCBI
Cytogenetic Map7q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3-dimethoxynaphthalene-1,4-dione  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
antirheumatic drug  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buspirone  (EXP)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
clarithromycin  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
Enterolactone  (ISO)
ethanol  (ISO)
fenthion  (ISO)
folic acid  (ISO)
hexadecanoic acid  (ISO)
inulin  (ISO)
isoniazide  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
leflunomide  (EXP)
levofloxacin  (EXP)
lithocholic acid  (ISO)
methyl methanesulfonate  (ISO)
miconazole  (ISO)
Muraglitazar  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
nimesulide  (EXP)
okadaic acid  (ISO)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
permethrin  (ISO)
phenobarbital  (ISO)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
silicon dioxide  (EXP,ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
Tesaglitazar  (EXP)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thimerosal  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Altered mouse cholinephosphotransferase gene expression in kidneys of type 2 diabetic KK/TA mouse. Gohda T, etal., Metabolism 2004 Jul;53(7):842-6.
3. Cloning, genomic organization, and characterization of a human cholinephosphotransferase. Henneberry AL, etal., J Biol Chem 2000 Sep 22;275(38):29808-15.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:20018880  


Genomics

Comparative Map Data
Chpt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8724,753,880 - 24,802,529 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl724,750,343 - 24,802,521 (-)EnsemblGRCr8
mRatBN7.2722,866,455 - 22,915,111 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl722,863,027 - 22,915,103 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx724,879,628 - 24,909,697 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0727,042,320 - 27,072,391 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0726,819,370 - 26,849,439 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0729,019,518 - 29,070,928 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl729,043,916 - 29,070,928 (-)Ensemblrn6Rnor6.0
Rnor_5.0729,126,760 - 29,177,859 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4725,171,417 - 25,198,384 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera720,042,608 - 20,074,943 (-)NCBICelera
RGSC_v3.1725,191,687 - 25,218,655 (-)NCBI
Cytogenetic Map7q13NCBI
CHPT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812101,697,640 - 101,729,074 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12101,696,947 - 101,744,140 (+)Ensemblhg38GRCh38
GRCh3712102,091,418 - 102,122,852 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612100,615,548 - 100,646,977 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3412100,593,884 - 100,625,314NCBI
Celera12101,756,108 - 101,786,875 (+)NCBICelera
Cytogenetic Map12q23.2NCBI
HuRef1299,151,477 - 99,182,455 (+)NCBIHuRef
CHM1_112102,058,098 - 102,089,528 (+)NCBICHM1_1
T2T-CHM13v2.012101,658,866 - 101,690,301 (+)NCBIT2T-CHM13v2.0
Chpt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391088,305,376 - 88,339,855 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1088,288,607 - 88,339,935 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381088,469,513 - 88,503,970 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1088,452,745 - 88,504,073 (-)Ensemblmm10GRCm38
MGSCv371087,935,558 - 87,966,715 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361087,903,332 - 87,933,664 (-)NCBIMGSCv36mm8
Celera1090,452,654 - 90,483,954 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1043.93NCBI
Chpt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540537,081,022 - 37,090,580 (+)Ensembl
ChiLan1.0NW_00495540537,081,024 - 37,093,798 (+)NCBIChiLan1.0ChiLan1.0
CHPT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210109,766,262 - 109,846,643 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112109,759,934 - 109,793,410 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01299,278,842 - 99,311,790 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112102,696,902 - 102,711,871 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12102,692,554 - 102,711,745 (+)EnsemblpanPan2panpan1.1
CHPT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11540,602,570 - 40,631,422 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1540,970,915 - 41,002,862 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01541,256,603 - 41,288,572 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1541,256,608 - 41,285,469 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11540,510,537 - 40,542,472 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01540,619,967 - 40,652,322 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01540,894,340 - 40,926,311 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Chpt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494519,316,217 - 19,348,113 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649212,326,636 - 12,358,527 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493649212,325,332 - 12,358,521 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHPT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl582,497,648 - 82,544,264 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1582,500,925 - 82,544,390 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2586,453,380 - 86,497,192 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHPT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11196,951,836 - 96,981,560 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1196,952,051 - 96,981,431 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037148,021,231 - 148,051,927 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chpt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247506,358,030 - 6,372,546 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247506,358,030 - 6,372,391 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Chpt1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11167,524,589 - 167,579,338 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Chpt1
407 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:33
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000007305
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)72154197751639954Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72380760668807606Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)72154197751639954Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)72154197735707405Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)71049882055498820Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72092049437412865Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71746044762460447Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)72005723265057232Rat

Markers in Region
D7Got14  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2722,909,634 - 22,909,933 (+)MAPPERmRatBN7.2
Rnor_6.0729,065,460 - 29,065,758NCBIRnor6.0
Rnor_5.0729,172,391 - 29,172,689UniSTSRnor5.0
RGSC_v3.4725,192,915 - 25,193,214RGDRGSC3.4
RGSC_v3.4725,192,916 - 25,193,214UniSTSRGSC3.4
Celera720,069,483 - 20,069,782UniSTS
RGSC_v3.1725,213,187 - 25,213,485RGD
RH 3.4 Map7117.1UniSTS
RH 3.4 Map7117.1RGD
RH 2.0 Map7133.2RGD
Cytogenetic Map7q13UniSTS
RH139836  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2722,889,258 - 22,889,458 (+)MAPPERmRatBN7.2
Rnor_6.0729,045,091 - 29,045,290NCBIRnor6.0
Rnor_5.0729,152,022 - 29,152,221UniSTSRnor5.0
RGSC_v3.4725,172,548 - 25,172,747UniSTSRGSC3.4
Celera720,049,122 - 20,049,321UniSTS
RH 3.4 Map7123.2UniSTS
Cytogenetic Map7q13UniSTS
RH131005  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2722,888,923 - 22,889,136 (+)MAPPERmRatBN7.2
Rnor_6.0729,044,756 - 29,044,968NCBIRnor6.0
Rnor_5.0729,151,687 - 29,151,899UniSTSRnor5.0
RGSC_v3.4725,172,213 - 25,172,425UniSTSRGSC3.4
Celera720,048,787 - 20,048,999UniSTS
RH 3.4 Map7119.96UniSTS
Cytogenetic Map7q13UniSTS
RH138958  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2722,899,683 - 22,899,855 (+)MAPPERmRatBN7.2
Rnor_6.0729,055,513 - 29,055,684NCBIRnor6.0
Rnor_5.0729,162,444 - 29,162,615UniSTSRnor5.0
RGSC_v3.4725,182,969 - 25,183,140UniSTSRGSC3.4
Celera720,059,536 - 20,059,707UniSTS
RH 3.4 Map7122.2UniSTS
Cytogenetic Map7q13UniSTS
fb62d09.x1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2722,908,735 - 22,909,745 (+)MAPPERmRatBN7.2
mRatBN7.2722,908,735 - 22,909,751 (+)MAPPERmRatBN7.2
Rnor_6.0729,064,565 - 29,065,576NCBIRnor6.0
Rnor_6.0729,064,565 - 29,065,570NCBIRnor6.0
Rnor_5.0729,171,496 - 29,172,507UniSTSRnor5.0
Rnor_5.0729,171,496 - 29,172,501UniSTSRnor5.0
RGSC_v3.4725,192,021 - 25,193,026UniSTSRGSC3.4
RGSC_v3.4725,192,021 - 25,193,032UniSTSRGSC3.4
Celera720,068,588 - 20,069,599UniSTS
Celera720,068,588 - 20,069,593UniSTS
Cytogenetic Map7q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 89 59 6 353 189 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000080939   ⟹   ENSRNOP00000072444
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl724,751,578 - 24,802,521 (-)Ensembl
mRatBN7.2 Ensembl722,888,084 - 22,915,103 (-)Ensembl
Rnor_6.0 Ensembl729,043,916 - 29,070,928 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094926   ⟹   ENSRNOP00000084340
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl724,750,343 - 24,802,521 (-)Ensembl
mRatBN7.2 Ensembl722,865,089 - 22,915,103 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097031   ⟹   ENSRNOP00000090264
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl724,750,486 - 24,802,521 (-)Ensembl
mRatBN7.2 Ensembl722,863,027 - 22,915,103 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000162025   ⟹   ENSRNOP00000106967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl724,751,578 - 24,802,521 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000167914   ⟹   ENSRNOP00000102864
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl724,772,448 - 24,802,521 (-)Ensembl
RefSeq Acc Id: NM_001394326   ⟹   NP_001381255
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,772,448 - 24,802,521 (-)NCBI
mRatBN7.2722,885,027 - 22,915,103 (-)NCBI
RefSeq Acc Id: NR_172095
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,772,448 - 24,802,521 (-)NCBI
mRatBN7.2722,885,027 - 22,915,103 (-)NCBI
RefSeq Acc Id: XM_006241230   ⟹   XP_006241292
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,753,880 - 24,802,529 (-)NCBI
mRatBN7.2722,866,455 - 22,915,111 (-)NCBI
Rnor_6.0729,021,965 - 29,070,923 (-)NCBI
Rnor_5.0729,126,760 - 29,177,859 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039079436   ⟹   XP_038935364
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,753,880 - 24,802,529 (-)NCBI
mRatBN7.2722,866,455 - 22,915,111 (-)NCBI
RefSeq Acc Id: XM_039079439   ⟹   XP_038935367
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,783,740 - 24,802,527 (-)NCBI
mRatBN7.2722,896,321 - 22,915,107 (-)NCBI
RefSeq Acc Id: XP_006241292   ⟸   XM_006241230
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GI18 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072444   ⟸   ENSRNOT00000080939
RefSeq Acc Id: XP_038935364   ⟸   XM_039079436
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZZB6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935367   ⟸   XM_039079439
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000084340   ⟸   ENSRNOT00000094926
Ensembl Acc Id: ENSRNOP00000090264   ⟸   ENSRNOT00000097031
RefSeq Acc Id: NP_001381255   ⟸   NM_001394326
- UniProtKB: Q66H21 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSRNOP00000106967   ⟸   ENSRNOT00000162025
Ensembl Acc Id: ENSRNOP00000102864   ⟸   ENSRNOT00000167914

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q66H21-F1-model_v2 AlphaFold Q66H21 1-398 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695128
Promoter ID:EPDNEW_R5653
Type:initiation region
Name:Chpt1_1
Description:choline phosphotransferase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0729,070,937 - 29,070,997EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359283 AgrOrtholog
BioCyc Gene G2FUF-34511 BioCyc
BioCyc Pathway PWY-3561 [choline biosynthesis III] BioCyc
  PWY-7782 [plasmalogen biosynthesis] BioCyc
  PWY-8053 [anandamide biosynthesis II] BioCyc
  PWY3O-450 [phosphatidylcholine biosynthesis I] BioCyc
BioCyc Pathway Image PWY-3561 BioCyc
  PWY-7782 BioCyc
  PWY-8053 BioCyc
  PWY3O-450 BioCyc
Ensembl Genes ENSRNOG00000058271 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000080939.2 UniProtKB/Swiss-Prot
  ENSRNOT00000094926 ENTREZGENE
  ENSRNOT00000162025 ENTREZGENE
  ENSRNOT00000167914 ENTREZGENE
Gene3D-CATH 1.20.120.1760 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7133149 IMAGE-MGC_LOAD
InterPro CDP-OH_P_trans UniProtKB/Swiss-Prot
  CDP-OH_PTrfase_TM_dom UniProtKB/Swiss-Prot
  CDP_ALCOHOL_P_TRANSF_CS UniProtKB/Swiss-Prot
  CHOPT UniProtKB/Swiss-Prot
MGC_CLONE MGC:95241 IMAGE-MGC_LOAD
NCBI Gene 362866 ENTREZGENE
PANTHER CHOLINEPHOSPHOTRANSFERASE 1 UniProtKB/Swiss-Prot
  PTHR10414 UniProtKB/Swiss-Prot
Pfam CDP-OH_P_transf UniProtKB/Swiss-Prot
PhenoGen Chpt1 PhenoGen
PIRSF CHOPT UniProtKB/Swiss-Prot
PROSITE CDP_ALCOHOL_P_TRANSF UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000058271 RatGTEx
UniProt A0A8I5ZZB6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GI18 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L2A5_RAT UniProtKB/TrEMBL
  A0ABK0L9E7_RAT UniProtKB/TrEMBL
  A6IFP3_RAT UniProtKB/TrEMBL
  CHPT1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Chpt1  choline phosphotransferase 1  MGC95241  similar to choline phosphotransferase 1; cholinephosphotransferase 1 alpha; cholinephosphotransferase 1  Symbol and Name updated 1299863 APPROVED
2005-07-29 MGC95241  similar to choline phosphotransferase 1; cholinephosphotransferase 1 alpha; cholinephosphotransferase 1      Symbol and Name status set to provisional 70820 PROVISIONAL