Cldnd1 (claudin domain containing 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Cldnd1 (claudin domain containing 1) Rattus norvegicus
Analyze
Symbol: Cldnd1
Name: claudin domain containing 1
RGD ID: 1359273
Description: Predicted to be located in apical plasma membrane. Orthologous to human CLDND1 (claudin domain containing 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: claudin domain-containing protein 1; MGC94479; similar to Protein C3orf4 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81155,352,321 - 55,358,779 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1155,352,321 - 55,358,907 (-)EnsemblGRCr8
mRatBN7.21141,883,120 - 41,889,471 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1141,883,134 - 41,889,354 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1150,630,871 - 50,637,227 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01143,292,435 - 43,298,791 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01142,421,074 - 42,427,430 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01143,986,352 - 43,992,703 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1143,986,386 - 43,992,598 (-)Ensemblrn6Rnor6.0
Rnor_5.01147,176,044 - 47,182,452 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41142,694,705 - 42,700,946 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1141,682,496 - 41,688,847 (-)NCBICelera
RGSC_v3.11142,752,295 - 42,758,535 (-)NCBI
Cytogenetic Map11q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. null JRS Domain-based curation
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:19581412   PMID:21276448   PMID:22871113   PMID:29530526  


Genomics

Comparative Map Data
Cldnd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81155,352,321 - 55,358,779 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1155,352,321 - 55,358,907 (-)EnsemblGRCr8
mRatBN7.21141,883,120 - 41,889,471 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1141,883,134 - 41,889,354 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1150,630,871 - 50,637,227 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01143,292,435 - 43,298,791 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01142,421,074 - 42,427,430 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01143,986,352 - 43,992,703 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1143,986,386 - 43,992,598 (-)Ensemblrn6Rnor6.0
Rnor_5.01147,176,044 - 47,182,452 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41142,694,705 - 42,700,946 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1141,682,496 - 41,688,847 (-)NCBICelera
RGSC_v3.11142,752,295 - 42,758,535 (-)NCBI
Cytogenetic Map11q12NCBI
CLDND1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38398,515,483 - 98,522,902 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl398,497,912 - 98,523,066 (-)Ensemblhg38GRCh38
GRCh37398,234,327 - 98,241,746 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36399,717,007 - 99,724,600 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34399,717,016 - 99,724,048NCBI
Celera396,625,975 - 96,633,568 (-)NCBICelera
Cytogenetic Map3q11.2NCBI
HuRef395,606,453 - 95,614,046 (-)NCBIHuRef
CHM1_1398,197,474 - 98,205,067 (-)NCBICHM1_1
T2T-CHM13v2.03101,219,167 - 101,226,586 (-)NCBIT2T-CHM13v2.0
Cldnd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391658,548,269 - 58,554,610 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1658,548,273 - 58,554,614 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381658,727,910 - 58,734,247 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1658,727,910 - 58,734,251 (+)Ensemblmm10GRCm38
MGSCv371658,728,157 - 58,734,350 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361658,670,587 - 58,676,780 (+)NCBIMGSCv36mm8
Celera1659,018,687 - 59,024,882 (+)NCBICelera
Cytogenetic Map16C1.2NCBI
cM Map1634.83NCBI
Cldnd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955427101,159 - 108,183 (-)Ensembl
ChiLan1.0NW_004955427101,159 - 108,655 (-)NCBIChiLan1.0ChiLan1.0
CLDND1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2296,451,920 - 96,459,518 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1396,456,703 - 96,464,283 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0395,611,469 - 95,619,065 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13102,285,782 - 102,302,395 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3102,280,672 - 102,302,184 (-)EnsemblpanPan2panpan1.1
CLDND1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1335,379,480 - 5,387,254 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl335,378,037 - 5,387,321 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha335,530,245 - 5,538,012 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0335,518,875 - 5,526,645 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl335,504,139 - 5,526,712 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1335,396,462 - 5,404,181 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0335,459,882 - 5,467,573 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0335,736,591 - 5,744,356 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cldnd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494621,215,386 - 21,217,647 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493719292,813 - 94,438 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLDND1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13160,397,511 - 160,425,722 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113160,397,444 - 160,405,675 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213170,586,984 - 170,595,207 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLDND1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12282,324,571 - 82,332,143 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2282,324,650 - 82,333,261 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604184,222,095 - 84,264,989 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cldnd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478911,384,535 - 11,393,103 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462478911,382,835 - 11,391,324 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cldnd1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1442,695,366 - 42,701,749 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cldnd1
356 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:682
Count of miRNA genes:263
Interacting mature miRNAs:331
Transcripts:ENSRNOT00000002260
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)112252474682951192Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)114644316891443168Rat
1598841Memor7Memory QTL 7exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)113330600878306008Rat
1598811Bp291Blood pressure QTL 2911.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113330600878306008Rat
11528648Bss118Bone structure and strength QTL 1186.6582e-07femur strength trait (VT:0010010)femur ultimate displacement (CMO:0002719)115410798756845449Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)111080612555806125Rat
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)113532319955805892Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)112995899657754989Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)113191546976915469Rat
2290451Scl58Serum cholesterol level QTL 583.48blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)112631803155806125Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)113642841681428416Rat
1600394Edcs1Endometrial carcinoma susceptibility QTL12.90.04uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)111282315257823152Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)113461876079618760Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)113674945981749459Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)113674945981749459Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat
631510Spl2Serum phospholipid level QTL 24.1blood phospholipid amount (VT:0006084)serum phospholipid level (CMO:0001171)112755668572556685Rat

Markers in Region
RH125651  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21141,883,154 - 41,883,400 (+)MAPPERmRatBN7.2
Rnor_6.01143,986,387 - 43,986,632NCBIRnor6.0
Rnor_5.01147,176,079 - 47,176,324UniSTSRnor5.0
RGSC_v3.41142,694,735 - 42,694,980UniSTSRGSC3.4
Celera1141,682,531 - 41,682,776UniSTS
Cytogenetic Map11q12UniSTS
AI849195  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21141,884,220 - 41,884,309 (+)MAPPERmRatBN7.2
Rnor_6.01143,987,453 - 43,987,541NCBIRnor6.0
Rnor_5.01147,177,145 - 47,177,233UniSTSRnor5.0
RGSC_v3.41142,695,801 - 42,695,889UniSTSRGSC3.4
Celera1141,683,597 - 41,683,685UniSTS
Cytogenetic Map11q12UniSTS
AW489850  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21141,884,220 - 41,884,341 (+)MAPPERmRatBN7.2
Rnor_6.01143,987,453 - 43,987,573NCBIRnor6.0
Rnor_5.01147,177,145 - 47,177,265UniSTSRnor5.0
RGSC_v3.41142,695,801 - 42,695,921UniSTSRGSC3.4
Celera1141,683,597 - 41,683,717UniSTS
Cytogenetic Map11q12UniSTS
AA945780  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21141,883,390 - 41,883,526 (+)MAPPERmRatBN7.2
Rnor_6.01143,986,623 - 43,986,758NCBIRnor6.0
Rnor_5.01147,176,315 - 47,176,450UniSTSRnor5.0
RGSC_v3.41142,694,971 - 42,695,106UniSTSRGSC3.4
Celera1141,682,767 - 41,682,902UniSTS
RH 3.4 Map11307.0UniSTS
Cytogenetic Map11q12UniSTS
RH124562  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21141,883,309 - 41,883,468 (+)MAPPERmRatBN7.2
Rnor_6.01143,986,542 - 43,986,700NCBIRnor6.0
Rnor_5.01147,176,234 - 47,176,392UniSTSRnor5.0
RGSC_v3.41142,694,890 - 42,695,048UniSTSRGSC3.4
Celera1141,682,686 - 41,682,844UniSTS
Cytogenetic Map11q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000002260   ⟹   ENSRNOP00000002260
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1155,352,321 - 55,358,907 (-)Ensembl
mRatBN7.2 Ensembl1141,883,134 - 41,889,354 (-)Ensembl
Rnor_6.0 Ensembl1143,986,386 - 43,992,598 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000167056   ⟹   ENSRNOP00000104069
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1155,352,321 - 55,358,907 (-)Ensembl
RefSeq Acc Id: NM_001006955   ⟹   NP_001006956
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,352,321 - 55,358,672 (-)NCBI
mRatBN7.21141,883,120 - 41,889,471 (-)NCBI
Rnor_6.01143,986,352 - 43,992,703 (-)NCBI
Rnor_5.01147,176,044 - 47,182,452 (-)NCBI
RGSC_v3.41142,694,705 - 42,700,946 (-)RGD
Celera1141,682,496 - 41,688,847 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006248204   ⟹   XP_006248266
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,352,326 - 55,358,779 (-)NCBI
mRatBN7.21141,883,120 - 41,889,402 (-)NCBI
Rnor_6.01143,986,352 - 43,992,626 (-)NCBI
Rnor_5.01147,176,044 - 47,182,452 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006248206   ⟹   XP_006248268
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,352,326 - 55,358,645 (-)NCBI
mRatBN7.21141,883,120 - 41,889,355 (-)NCBI
Rnor_6.01143,986,352 - 43,992,605 (-)NCBI
Rnor_5.01147,176,044 - 47,182,452 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063270411   ⟹   XP_063126481
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81155,352,326 - 55,357,936 (-)NCBI
RefSeq Acc Id: NP_001006956   ⟸   NM_001006955
- UniProtKB: G3V674 (UniProtKB/TrEMBL),   A6IQK9 (UniProtKB/TrEMBL),   Q5XIN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248266   ⟸   XM_006248204
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006248268   ⟸   XM_006248206
- Peptide Label: isoform X2
- UniProtKB: Q5XIN0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000002260   ⟸   ENSRNOT00000002260
RefSeq Acc Id: XP_063126481   ⟸   XM_063270411
- Peptide Label: isoform X3
- UniProtKB: A6IQK9 (UniProtKB/TrEMBL),   G3V674 (UniProtKB/TrEMBL),   Q5XIN0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000104069   ⟸   ENSRNOT00000167056

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V674-F1-model_v2 AlphaFold G3V674 1-253 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698104
Promoter ID:EPDNEW_R8629
Type:multiple initiation site
Name:Cldnd1_1
Description:claudin domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01143,992,565 - 43,992,625EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359273 AgrOrtholog
BioCyc Gene G2FUF-21572 BioCyc
Ensembl Genes ENSRNOG00000001657 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002260 ENTREZGENE
  ENSRNOT00000002260.6 UniProtKB/TrEMBL
  ENSRNOT00000167056.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7135100 IMAGE-MGC_LOAD
InterPro CLDN1 UniProtKB/TrEMBL
  PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
KEGG Report rno:288182 UniProtKB/TrEMBL
MGC_CLONE MGC:94479 IMAGE-MGC_LOAD
NCBI Gene 288182 ENTREZGENE
PANTHER CLAUDIN DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR14347 UniProtKB/TrEMBL
Pfam Claudin_2 UniProtKB/TrEMBL
  PMP22_Claudin UniProtKB/TrEMBL
PhenoGen Cldnd1 PhenoGen
RatGTEx ENSRNOG00000001657 RatGTEx
UniProt A0ABK0LI78_RAT UniProtKB/TrEMBL
  A6IQK6_RAT UniProtKB/TrEMBL
  A6IQK9 ENTREZGENE, UniProtKB/TrEMBL
  A6IQL1_RAT UniProtKB/TrEMBL
  G3V674 ENTREZGENE, UniProtKB/TrEMBL
  Q5XIN0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Cldnd1  claudin domain containing 1  MGC94479  similar to Protein C3orf4 homolog  Symbol and Name updated 1299863 APPROVED
2005-07-29 MGC94479  similar to Protein C3orf4 homolog      Symbol and Name status set to provisional 70820 PROVISIONAL