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Gene: Tm9sf2 (transmembrane 9 superfamily member 2) Rattus norvegicus

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Symbol:

Tm9sf2

Name:

transmembrane 9 superfamily member 2

RGD ID:

1359230

Description:

Predicted to be involved in protein localization to membrane; regulation of heparan sulfate proteoglycan biosynthetic process; and sphingolipid metabolic process. Predicted to be located in Golgi apparatus. Predicted to be active in membrane. Orthologous to human TM9SF2 (transmembrane 9 superfamily member 2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

MGC93724

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TM9SF2 (transmembrane 9 superfamily member 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Tm9sf2 (transmembrane 9 superfamily member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tm9sf2 (transmembrane 9 superfamily member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TM9SF2 (transmembrane 9 superfamily member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TM9SF2 (transmembrane 9 superfamily member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tm9sf2 (transmembrane 9 superfamily member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TM9SF2 (transmembrane 9 superfamily member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TM9SF2 (transmembrane 9 superfamily member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tm9sf2 (transmembrane 9 superfamily member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tm9sf2 (transmembrane 9 superfamily member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TM9SF2 (transmembrane 9 superfamily member 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tm9sf2 (transmembrane 9 superfamily member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tm9sf2 (transmembrane 9 superfamily member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	EMP70	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	EMP70	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	TM9SF2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tag-123	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	TMN2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	TMN2	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tm9sf2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tm9sf2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	105,606,082 - 105,660,715 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	105,606,118 - 105,660,714 (+)	Ensembl				GRCr8
mRatBN7.2	15	99,201,556 - 99,254,054 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	99,201,489 - 99,254,049 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	103,134,961 - 103,187,448 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	104,227,449 - 104,279,876 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	101,154,683 - 101,207,116 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	108,526,341 - 108,579,268 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	108,526,014 - 108,579,256 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	111,911,685 - 111,967,206 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	107,228,796 - 107,281,296 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	97,974,851 - 98,027,262 (+)	NCBI		Celera
RGSC_v3.1	15	107,244,575 - 107,297,076 (+)	NCBI
Cytogenetic Map	15	q25	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute lymphoblastic leukemia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

2-bromohexadecanoic acid (ISO)

3,3',4,4'-tetrachlorobiphenyl (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

aconitine (EXP)

aflatoxin B1 (ISO)

amitrole (EXP)

ampicillin (EXP)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bilirubin IXalpha (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cannabidiol (ISO)

chromium(6+) (ISO)

clozapine (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

deoxynivalenol (ISO)

doxorubicin (ISO)

folic acid (ISO)

gentamycin (EXP)

haloperidol (ISO)

ivermectin (ISO)

Mesaconitine (EXP)

metronidazole (EXP)

neomycin (EXP)

Nivalenol (ISO)

paracetamol (ISO)

phenobarbital (ISO)

rotenone (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

sulfadimethoxine (EXP)

tamoxifen (ISO)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (ISO)

thapsigargin (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

tungsten (ISO)

valproic acid (ISO)

vancomycin (EXP)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

ceramide metabolic process (ISO)

glycosphingolipid biosynthetic process (ISO)

protein localization to membrane (IBA)

regulation of heparan sulfate proteoglycan biosynthetic process (ISO)

Cellular Component

cytoplasm (IEA)

endosome membrane (IEA)

Golgi apparatus (ISO,ISS)

membrane (IBA,IEA)

microtubule organizing center (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	A novel Rab9 effector required for endosome-to-TGN transport.	Diaz E, etal., J Cell Biol 1997 Jul 28;138(2):283-90.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation
7.	Classification of pediatric acute lymphoblastic leukemia by gene expression profiling.	Ross ME, etal., Blood. 2003 Oct 15;102(8):2951-9. Epub 2003 May 1.
8.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:19199708

Genomics

Comparative Map Data

Tm9sf2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	105,606,082 - 105,660,715 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	105,606,118 - 105,660,714 (+)	Ensembl				GRCr8
mRatBN7.2	15	99,201,556 - 99,254,054 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	99,201,489 - 99,254,049 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	103,134,961 - 103,187,448 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	104,227,449 - 104,279,876 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	101,154,683 - 101,207,116 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	108,526,341 - 108,579,268 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	108,526,014 - 108,579,256 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	111,911,685 - 111,967,206 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	107,228,796 - 107,281,296 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	97,974,851 - 98,027,262 (+)	NCBI		Celera
RGSC_v3.1	15	107,244,575 - 107,297,076 (+)	NCBI
Cytogenetic Map	15	q25	NCBI

TM9SF2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	99,501,472 - 99,564,048 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	99,446,311 - 99,564,048 (+)	Ensembl			hg38	GRCh38
GRCh37	13	100,153,726 - 100,216,302 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	98,951,729 - 99,013,279 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	13	98,951,728 - 99,013,277	NCBI
Celera	13	80,998,257 - 81,059,812 (+)	NCBI		Celera
Cytogenetic Map	13	q32.3	NCBI
HuRef	13	80,748,449 - 80,811,058 (+)	NCBI		HuRef
CHM1_1	13	100,123,519 - 100,186,222 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	13	98,712,365 - 98,774,941 (+)	NCBI		T2T-CHM13v2.0

Tm9sf2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	122,342,290 - 122,397,015 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	122,344,450 - 122,397,016 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	122,107,082 - 122,159,603 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	122,107,038 - 122,159,604 (+)	Ensembl			mm10	GRCm38
MGSCv37	14	122,506,304 - 122,558,825 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	121,242,262 - 121,294,783 (+)	NCBI		MGSCv36	mm8
Celera	14	120,669,650 - 120,722,278 (+)	NCBI		Celera
Cytogenetic Map	14	E5	NCBI
cM Map	14	65.86	NCBI

Tm9sf2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955404	11,069,843 - 11,129,056 (-)	Ensembl
ChiLan1.0	NW_004955404	11,071,716 - 11,128,758 (-)	NCBI	ChiLan1.0	ChiLan1.0

TM9SF2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	101,025,667 - 101,088,026 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	99,695,871 - 99,758,225 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	80,669,277 - 80,731,340 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	99,806,942 - 99,869,456 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	99,807,555 - 99,869,456 (+)	Ensembl			panPan2	panpan1.1

TM9SF2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	49,515,350 - 49,578,519 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	49,515,382 - 49,577,905 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	49,296,268 - 49,359,483 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	49,957,024 - 50,020,235 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	49,957,036 - 50,020,235 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	49,607,692 - 49,671,749 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	49,642,267 - 49,704,740 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	49,678,708 - 49,741,653 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tm9sf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	184,945,849 - 185,005,895 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936472	10,945,906 - 11,006,324 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936472	10,946,263 - 11,006,311 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TM9SF2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	68,404,975 - 68,469,953 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	11	68,407,834 - 68,469,956 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	75,772,893 - 75,775,385 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TM9SF2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	78,143,850 - 78,217,461 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	78,144,078 - 78,216,828 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666046	34,638,569 - 34,713,435 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tm9sf2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624793	11,511,446 - 11,579,008 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624793	11,515,047 - 11,644,073 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tm9sf2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	12	2,728,754 - 2,780,234 (-)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	214
Count of miRNA genes:	149
Interacting mature miRNAs:	167
Transcripts:	ENSRNOT00000017211
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549844	Bss7	Bone structure and strength QTL 7	6.4		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	15	82194914	108192169	Rat
2300326	Plaw1	Placental weight QTL 1	15	0.005	placenta mass (VT:0004257)	placenta wet weight (CMO:0002088)	15	74735564	106469153	Rat
2298549	Neuinf12	Neuroinflammation QTL 12	3.5		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	15	61710951	106710951	Rat
1358354	Srcrt5	Stress Responsive Cort QTL 5	3.38		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	82503470	108192169	Rat
1641889	Colcr6	Colorectal carcinoma resistance QTL 6	2.9	0.0126	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	15	83700787	108192169	Rat
70155	Gcs1	Gastric cancer susceptibility QTL1	3.8		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	15	82714037	106778197	Rat
2313080	Bss65	Bone structure and strength QTL 65	3.9	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	15	67399137	108192169	Rat
2317055	Aia10	Adjuvant induced arthritis QTL 10	3.41		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	15	82194914	108192169	Rat
631655	Bp126	Blood pressure QTL 126	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	15	64571127	108192169	Rat
7411646	Foco21	Food consumption QTL 21	23.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	15	84278281	108192169	Rat

Markers in Region

RH142372

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	99,253,734 - 99,253,892 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	108,578,949 - 108,579,106	NCBI	Rnor6.0
Rnor_5.0	15	111,966,887 - 111,967,044	UniSTS	Rnor5.0
RGSC_v3.4	15	107,280,977 - 107,281,134	UniSTS	RGSC3.4
Celera	15	98,026,943 - 98,027,100	UniSTS
RH 3.4 Map	15	708.6	UniSTS
Cytogenetic Map	15	q25	UniSTS

BE120307

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	99,254,050 - 99,254,210 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	108,579,265 - 108,579,424	NCBI	Rnor6.0
Rnor_5.0	15	111,967,203 - 111,967,362	UniSTS	Rnor5.0
RGSC_v3.4	15	107,281,293 - 107,281,452	UniSTS	RGSC3.4
Celera	15	98,027,259 - 98,027,418	UniSTS
RH 3.4 Map	15	710.3	UniSTS
Cytogenetic Map	15	q25	UniSTS

RH124295

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	99,245,496 - 99,245,591 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	108,570,368 - 108,570,462	NCBI	Rnor6.0
Rnor_5.0	15	111,958,306 - 111,958,400	UniSTS	Rnor5.0
RGSC_v3.4	15	107,272,740 - 107,272,834	UniSTS	RGSC3.4
Celera	15	98,018,706 - 98,018,800	UniSTS
Cytogenetic Map	15	q25	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001005554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC129791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081873	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ209454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000017211 ⟹ ENSRNOP00000017211

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	105,606,118 - 105,660,714 (+)	Ensembl
mRatBN7.2 Ensembl	15	99,201,496 - 99,254,049 (+)	Ensembl
Rnor_6.0 Ensembl	15	108,526,014 - 108,579,256 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113532 ⟹ ENSRNOP00000086158

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	105,606,118 - 105,660,714 (+)	Ensembl
mRatBN7.2 Ensembl	15	99,201,489 - 99,254,049 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000139924 ⟹ ENSRNOP00000099581

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	105,606,118 - 105,658,022 (+)	Ensembl

RefSeq Acc Id:

NM_001005554 ⟹ NP_001005554

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	105,608,208 - 105,660,715 (+)	NCBI
mRatBN7.2	15	99,201,556 - 99,254,054 (+)	NCBI
Rnor_6.0	15	108,526,341 - 108,579,268 (+)	NCBI
Rnor_5.0	15	111,911,685 - 111,967,206 (+)	NCBI
RGSC_v3.4	15	107,228,796 - 107,281,296 (+)	RGD
Celera	15	97,974,851 - 98,027,262 (+)	RGD

Sequence:

show sequence

CTTCGGTTTCTGTCGCGGGGCCGGTGGTGTCTCCTAGCGTAACCGGAACTAGCCGTTGCGGGCC
GGCCTTCTCTGCGCTCGGGCCTTGAGGTGATCTCCGAGGCCCCCGCCCCTCCTCCCTCGTCGTC
CCCTCGGCTCGGCCGCCCTCCTTTCACAGCCGCCGGCATGAGCTCCAGGCCGCCCGCGTCGCTG
CCAGCGCGAGGCCCGCGGTTGTTGCTGCTGTCGCTGCTCTTGCTAGGGACGGTCCCAGGCCCGC
GCCCGGGCAGCGCCTTCTACCTGCCTGGCCTGGCTCCGGTCAATTTCTGCACCGAAGAGAAGAA
GAGCAACGAGTGCAAGGCTGAGATAGAACTGTTTGTTAACCGGCTTGATTCAGTGGAGTCTGTT
CTTCCTTATGAATATACAGCGTTTGATTTTTGCCAAGCATCAGAAGGAAAACGCCCATCTGAAA
ATCTTGGTCAGGTATTATTCGGGGAAAGAATTGAACCCTCACCATACAAGTTTACATTTAATAA
GGAGGAAACCTGTAAACTCGTTTGTACGAAAACATACCATACAGAGAAGGCTGAAGACAAACAG
AAGTTAGACTTCTTGAAAAAAAGCATGCTACTGAACTATCAGCATCACTGGATTGTGGATAATA
TGCCTGTTACGTGGTGCTATGAGGTTGAAGACAATCAGAAGTTCTGTAATCCTGGATTTCCTAT
TGGCTGTTACATTACAGATAAAGGCCATGCGAAAGATGCCTGTGTAATTAGTTCAGAATTCCAT
GAGAGAGACACTTTCTACATCTTCAATCATGTTGACATCAAGATACAATATCACGTTGTTGAAA
CTGGGTCCATGGGAGCGAGATTAGTGGCTGCTAAACTCGAACCAAAAAGCTTCAGACATACCCA
TATAGATAAACCAGACTGCTCTGGACCCGCCATGGATATAAGCAACAAGGCTTCTGGGGAGATC
AAAATTGCCTATACTTACTCTATTAGTTTTGAGGAAGAGAAAAACATCAGGTGGGCCTCCAGAT
GGGACTACATTCTGGAGTCTATGCCTCACACTCACATTCAATGGTTTAGCATAATGAATTCCTT
GGTGATTGTCCTCTTCTTGTCTGGAATGGTAGCTATGATTATGTTACGCACACTACATAAAGAT
ATTGCCAGATATAACCAGATGGACTCTACGGAGGATGCCCAGGAAGAATTTGGCTGGAAACTCG
TTCATGGGGATATATTCCGTCCTCCAAGAAAGGGGATGCTGCTGTCTGTCTTTCTAGGATCTGG
AACACAGATTTTAATTATGACTTTTGTAACTCTATTTTTCGCATGTCTGGGATTCTTGTCCCCT
GCCAATCGAGGAGCCCTGATGACGTGTGCTGTGGTCTTGTGGGTGCTACTGGGCACACCTGCTG
GCTATGTTGCTGCCAGATTCTACAAGTCCTTTGGGGGCGAGAAGTGGAAAACAAATGTTTTATT
GACATCCTTCCTTTGTCCTGGGATTGTGTTTGCTGACTTCTTTATCATGAATCTGATCCTCTGG
GGAGAGGGCTCTTCAGCAGCGATTCCTTTTGGCACCCTGGTTGCCATCTTGGCCCTCTGGTTCT
GCATATCTGTGCCTTTGACGTTTATTGGTGCATATTTTGGCTTTAAGAAGAATGCCATTGAACA
CCCAGTTCGAACCAATCAGATTCCTCGTCAGATTCCCGAGCAGTCCTTCTACACCAAGCCTTTG
CCCGGCATCATCATGGGGGGCATTTTGCCCTTCGGCTGCATCTTTATACAGCTTTTCTTCATTC
TCAACAGCATTTGGTCACACCAGATGTATTACATGTTTGGCTTCCTGTTTCTGGTGTTTATCAT
TTTGGTTATTACATGCTCGGAGGCAACCATACTTCTTTGCTATTTTCATCTATGTGCAGAGGAT
TACCATTGGCAGTGGCGTTCCTTCCTCACCAGCGGCTTCACGGCAGTGTATTTCCTCGTATACG
CCATACACTACTTCTTTTCAAAACTGCAGATCACGGGAACAGCAAGTACAATCCTGTACTTTGG
TTACACTATGATAATGGTCTTGATCTTCTTCCTTTTTACAGGAACAATTGGCTTCTTTGCATGC
TTTTGGTTTGTCACCAAAATATACAGTGTGGTGAAGGTCGACTGAAGAAACCCAGTGTGTCCAG
TTAAAACAAATAAACTAAATCTTCATCCACAAAGACCTGTTTTGTGACTCCCTTGAGTTTTCTC
AGACTTATGGCCTAGTAATCCTTCAGAAACAGCAGACTTCCAAGTACACCTCTCCCCATGCGCC
TGTCCCTACCTACAAGATGTATTTCAACACTAAAGCATTTGTATTGTGATTGGATTAAGTATAT
ATTCAGTTGTTCTCAGTGAAGAGCAAATTTAAATATTATGTGCATTTGTAAATACGGTAGCTAT
AAACTTTTCAATACTTCTAATGGCAGATTAGAGGAGGCCATAATACTGACGATACTGGACAGTC
GATTGTACATAGGGTTTTCTAGACTCGGTAGGTGGAAAGAATTATTTTTCTTTGAAGGAAATAA
CTTTTTATCATGGTAATTTTGAAGGATGATTCCTATGATGTGTTCATTGGGGGGATGTGGCTTT
TAAAAATCTTGTATTGGTTGTAATTGTTCATATCTTCTTACTTTTCTGTGTTGACTTCATTATT
CCCATGGTATTGGCCTTTTAAACTATGTGCCTCTGAGTCTTTGGATTTATAAATTTGTTATCTT
AATAAATATTGTAAAAATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_063274359 ⟹ XP_063130429

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	105,606,082 - 105,660,714 (+)	NCBI

RefSeq Acc Id:

XM_063274360 ⟹ XP_063130430

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	105,606,104 - 105,660,714 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001005554	(Get FASTA)	NCBI Sequence Viewer
	XP_063130429	(Get FASTA)	NCBI Sequence Viewer
	XP_063130430	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH81873	(Get FASTA)	NCBI Sequence Viewer
	EDM02575	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000017211
	ENSRNOP00000017211.5
GenBank Protein	Q66HG5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001005554 ⟸ NM_001005554
- Peptide Label:	precursor
- UniProtKB:	Q66HG5 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MSSRPPASLPARGPRLLLLSLLLLGTVPGPRPGSAFYLPGLAPVNFCTEEKKSNECKAEIELFV NRLDSVESVLPYEYTAFDFCQASEGKRPSENLGQVLFGERIEPSPYKFTFNKEETCKLVCTKTY HTEKAEDKQKLDFLKKSMLLNYQHHWIVDNMPVTWCYEVEDNQKFCNPGFPIGCYITDKGHAKD ACVISSEFHERDTFYIFNHVDIKIQYHVVETGSMGARLVAAKLEPKSFRHTHIDKPDCSGPAMD ISNKASGEIKIAYTYSISFEEEKNIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAM IMLRTLHKDIARYNQMDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLF FACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFAD FFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIP EQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILL CYFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLF TGTIGFFACFWFVTKIYSVVKVD hide sequence

Ensembl Acc Id:

ENSRNOP00000017211 ⟸ ENSRNOT00000017211

Ensembl Acc Id:

ENSRNOP00000086158 ⟸ ENSRNOT00000113532

RefSeq Acc Id:	XP_063130429 ⟸ XM_063274359
- Peptide Label:	isoform X1
- UniProtKB:	Q66HG5 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063130430 ⟸ XM_063274360
- Peptide Label:	isoform X1
- UniProtKB:	Q66HG5 (UniProtKB/Swiss-Prot)

Ensembl Acc Id:

ENSRNOP00000099581 ⟸ ENSRNOT00000139924

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q66HG5-F1-model_v2	AlphaFold	Q66HG5	1-663	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699882

Promoter ID:

EPDNEW_R10406

Type:

initiation region

Name:

Tm9sf2_1

Description:

transmembrane 9 superfamily member 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	108,526,376 - 108,526,436	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359230	AgrOrtholog
BioCyc Gene	G2FUF-12359	BioCyc
Ensembl Genes	ENSRNOG00000012751	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000017211	ENTREZGENE
	ENSRNOT00000017211.7	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7107003	IMAGE-MGC_LOAD
InterPro	EMP70	UniProtKB/Swiss-Prot
KEGG Report	rno:306197	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93724	IMAGE-MGC_LOAD
NCBI Gene	306197	ENTREZGENE
PANTHER	PTHR10766	UniProtKB/Swiss-Prot
	TRANSMEMBRANE 9 SUPERFAMILY MEMBER 2	UniProtKB/Swiss-Prot
Pfam	EMP70	UniProtKB/Swiss-Prot
PharmGKB	TM9SF2	RGD
PhenoGen	Tm9sf2	PhenoGen
RatGTEx	ENSRNOG00000012751	RatGTEx
UniProt	A0A8I6A1N3_RAT	UniProtKB/TrEMBL
	A0ABK0L6L4_RAT	UniProtKB/TrEMBL
	A6HUL2_RAT	UniProtKB/TrEMBL
	Q66HG5	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Tm9sf2	transmembrane 9 superfamily member 2			Symbol and Name status set to approved	1299863	APPROVED
2005-07-29	Tm9sf2	transmembrane 9 superfamily member 2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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