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Gene: B4galt3 (beta-1,4-galactosyltransferase 3) Rattus norvegicus

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Symbol:

B4galt3

Name:

beta-1,4-galactosyltransferase 3

RGD ID:

1359221

Description:

Predicted to enable galactosyltransferase activity. Predicted to be involved in galactosylceramide biosynthetic process and glycosylation. Predicted to be located in Golgi cisterna membrane and cytosol. Predicted to be active in Golgi apparatus. Orthologous to human B4GALT3 (beta-1,4-galactosyltransferase 3); PARTICIPATES IN keratan sulfate biosynthetic pathway; lacto-series glycosphingolipid metabolic pathway; N-linked glycan biosynthetic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; amphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

b4Gal-T3; beta-1,4-GalTase 3; beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase; beta4Gal-T3; MGC72586; N-acetyllactosamine synthase; nal synthase; neolactotriaosylceramide beta-1,4-galactosyltransferase; similar to UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3; UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 3; UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3; UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	B4GALT3 (beta-1,4-galactosyltransferase 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	B4galt3 (UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	B4galt3 (beta-1,4-galactosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	B4GALT3 (beta-1,4-galactosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	B4GALT3 (beta-1,4-galactosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	B4galt3 (beta-1,4-galactosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	B4GALT3 (beta-1,4-galactosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	B4GALT3 (beta-1,4-galactosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	B4galt3 (beta-1,4-galactosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	B4galt3 (beta-1,4-galactosyltransferase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	B4GALT3 (beta-1,4-galactosyltransferase 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	B4galt3 (UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	b4galt3 (UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	beta4GalNAcTA	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	bre-4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	bre-4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	b4galt3l2	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector)
Xenopus tropicalis (tropical clawed frog):	b4galt3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	b4galt3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC116406683	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	86,223,827 - 86,229,886 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	86,223,899 - 86,229,888 (+)	Ensembl				GRCr8
mRatBN7.2	13	83,691,378 - 83,697,448 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	83,691,446 - 83,697,448 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	86,197,318 - 86,203,306 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	87,595,525 - 87,601,513 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	84,826,973 - 84,832,973 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	89,643,847 - 89,649,880 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	89,643,881 - 89,649,906 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	94,270,736 - 94,276,746 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	87,164,387 - 87,170,376 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	83,322,134 - 83,328,122 (+)	NCBI		Celera
RGSC_v3.1	13	87,353,270 - 87,359,260 (+)	NCBI
Cytogenetic Map	13	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (EXP)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (EXP)

chlorpyrifos (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

gentamycin (EXP)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methotrexate (ISO)

paracetamol (EXP,ISO)

phenobarbital (ISO)

rac-lactic acid (ISO)

sodium arsenite (ISO)

testosterone (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate metabolic process (IEA)

galactosylceramide biosynthetic process (IBA)

glucosylceramide metabolic process (IEA,ISO)

lipid metabolic process (IEA)

Cellular Component

Golgi apparatus (IBA,IEA,ISO)

Golgi cisterna membrane (IEA)

Molecular Function

beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity (IEA,ISO)

galactosyltransferase activity (IBA,IEA,ISO)

glycosyltransferase activity (IEA)

metal ion binding (IEA)

N-acetyllactosamine synthase activity (IEA)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

keratan sulfate biosynthetic pathway (IEA)

lacto-series glycosphingolipid metabolic pathway (IEA)

N-linked glycan biosynthetic pathway (IEA)

O-linked glycan biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:9405390	PMID:15489334	PMID:19199708

Genomics

Comparative Map Data

B4galt3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	86,223,827 - 86,229,886 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	86,223,899 - 86,229,888 (+)	Ensembl				GRCr8
mRatBN7.2	13	83,691,378 - 83,697,448 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	83,691,446 - 83,697,448 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	86,197,318 - 86,203,306 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	87,595,525 - 87,601,513 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	84,826,973 - 84,832,973 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	89,643,847 - 89,649,880 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	89,643,881 - 89,649,906 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	94,270,736 - 94,276,746 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	87,164,387 - 87,170,376 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	83,322,134 - 83,328,122 (+)	NCBI		Celera
RGSC_v3.1	13	87,353,270 - 87,359,260 (+)	NCBI
Cytogenetic Map	13	q24	NCBI

B4GALT3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	161,171,310 - 161,177,968 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	161,171,306 - 161,178,652 (-)	Ensembl			hg38	GRCh38
GRCh37	1	161,141,100 - 161,147,758 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	159,407,725 - 159,413,938 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	157,954,173 - 157,960,387	NCBI
Celera	1	134,208,254 - 134,214,467 (-)	NCBI		Celera
Cytogenetic Map	1	q23.3	NCBI
HuRef	1	132,498,042 - 132,504,704 (-)	NCBI		HuRef
CHM1_1	1	162,537,350 - 162,544,012 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	160,308,766 - 160,315,427 (-)	NCBI		T2T-CHM13v2.0

B4galt3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	171,097,898 - 171,104,468 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	171,097,898 - 171,104,469 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	171,270,328 - 171,276,895 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	171,270,328 - 171,276,896 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	173,200,459 - 173,207,026 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	173,107,063 - 173,113,570 (+)	NCBI		MGSCv36	mm8
Celera	1	173,726,385 - 173,732,916 (+)	NCBI		Celera
Cytogenetic Map	1	H3	NCBI
cM Map	1	79.29	NCBI

B4galt3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	12,932,059 - 12,940,723 (-)	Ensembl
ChiLan1.0	NW_004955468	12,934,521 - 12,945,435 (-)	NCBI	ChiLan1.0	ChiLan1.0

B4GALT3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	88,674,437 - 88,680,660 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	88,364,762 - 88,370,989 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	136,583,783 - 136,590,416 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	140,496,597 - 140,503,214 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	140,496,597 - 140,503,214 (-)	Ensembl			panPan2	panpan1.1

B4GALT3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	21,301,835 - 21,306,854 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	21,302,003 - 21,312,958 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	21,375,960 - 21,381,714 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	21,418,949 - 21,424,705 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	21,419,010 - 21,424,703 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	21,306,787 - 21,312,540 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	21,721,206 - 21,726,973 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	22,130,365 - 22,136,121 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

B4galt3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	7,266,138 - 7,272,721 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936903	474,796 - 481,242 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936903	474,789 - 481,342 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

B4GALT3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	89,278,439 - 89,284,400 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	89,278,256 - 89,284,407 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	97,135,015 - 97,141,134 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

B4GALT3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	2,807,510 - 2,814,480 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	2,807,895 - 2,814,476 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	1,855,058 - 1,861,572 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

B4galt3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	206,591 - 212,141 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624794	205,726 - 212,141 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

B4galt3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	50,435,667 - 50,441,845 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in B4galt3
46 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	319
Count of miRNA genes:	176
Interacting mature miRNAs:	203
Transcripts:	ENSRNOT00000004735
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	83286150	109350286	Rat
8655945	Rf61	Renal function QTL 61	3.6		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	13	71610804	89333251	Rat
71119	Thym2	Thymus enlargement QTL 2	3.8		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	13	48749814	87285480	Rat
1331783	Bp221	Blood pressure QTL 221	3.72886		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	71610804	89333251	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	72984506	99745408	Rat
1300166	Kidm6	Kidney mass QTL 6	3.93		kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	13	71610804	89333251	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	62424592	88113509	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

AW125175

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	83,697,056 - 83,697,172 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	89,649,489 - 89,649,604	NCBI	Rnor6.0
Rnor_5.0	13	94,276,355 - 94,276,470	UniSTS	Rnor5.0
RGSC_v3.4	13	87,169,997 - 87,170,112	UniSTS	RGSC3.4
Celera	13	83,327,743 - 83,327,858	UniSTS
Cytogenetic Map	13	q24	UniSTS

RH128542

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	83,697,114 - 83,697,316 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	89,649,547 - 89,649,748	NCBI	Rnor6.0
Rnor_5.0	13	94,276,413 - 94,276,614	UniSTS	Rnor5.0
RGSC_v3.4	13	87,170,055 - 87,170,256	UniSTS	RGSC3.4
Celera	13	83,327,801 - 83,328,002	UniSTS
Cytogenetic Map	13	q24	UniSTS

RH142400

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	83,696,924 - 83,697,078 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	89,649,357 - 89,649,510	NCBI	Rnor6.0
Rnor_5.0	13	94,276,223 - 94,276,376	UniSTS	Rnor5.0
RGSC_v3.4	13	87,169,865 - 87,170,018	UniSTS	RGSC3.4
Celera	13	83,327,611 - 83,327,764	UniSTS
RH 3.4 Map	13	561.3	UniSTS
Cytogenetic Map	13	q24	UniSTS

AI406786

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	83,694,298 - 83,694,458 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	89,646,731 - 89,646,890	NCBI	Rnor6.0
Rnor_5.0	13	94,273,597 - 94,273,756	UniSTS	Rnor5.0
RGSC_v3.4	13	87,167,239 - 87,167,398	UniSTS	RGSC3.4
Celera	13	83,324,985 - 83,325,144	UniSTS
RH 3.4 Map	13	551.9	UniSTS
Cytogenetic Map	13	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	92	59	6	356	192	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001009539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429941	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC099236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC061812	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004735 ⟹ ENSRNOP00000004735

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	86,223,899 - 86,229,888 (+)	Ensembl
mRatBN7.2 Ensembl	13	83,691,446 - 83,697,448 (+)	Ensembl
Rnor_6.0 Ensembl	13	89,643,881 - 89,649,906 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108060 ⟹ ENSRNOP00000090652

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	83,691,510 - 83,697,435 (+)	Ensembl

RefSeq Acc Id:

NM_001009539 ⟹ NP_001009539

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,223,897 - 86,229,885 (+)	NCBI
mRatBN7.2	13	83,691,448 - 83,697,436 (+)	NCBI
Rnor_6.0	13	89,643,880 - 89,649,868 (+)	NCBI
Rnor_5.0	13	94,270,736 - 94,276,746 (+)	NCBI
RGSC_v3.4	13	87,164,387 - 87,170,376 (+)	RGD
Celera	13	83,322,134 - 83,328,122 (+)	RGD

Sequence:

show sequence

CCGCTTCCAAGATGGCGGCAGCGATGCTTGCCCGGTTGTCCGGGTGGCGGTGACGACGGGAAGC
AGACCAGGTGACTGGTTATCCTTGATCATTTCTGGTTCCCGCTGGTCCCAGATTGGCTGTTGGG
ATGCTTGTTTTCTGTCCTCTGTGACAGTTGAAATTTGAGATAATGCCTCATTTCTCTGCTCCCC
GGGGACCTCCTGGAGCCTCCATGATTCGGAAAAAGACAGCTTGAGCACAGTCCCTTCACTTCTT
ACCTAGCCCTCAGGTCGAGATGTTGCGGAGGCTGCTGGAGAGGCCCTGCACACTGGCCCTGCTT
GTGGGCTCCCAACTGGCAGTTATGATGTATCTGTCACTAGGGGGCTTCCGAAGTCTTAGTGCCC
TGTTTGGTCGAGATCCAGGCCCAACATTCGACTATTCTCATCCCCATGATGTCTATAGTAACCT
CAGTCACCTGCCTGGAGCCCCTGGAGCTGCAGGGGCTCCTCTAGCTCAAGTTCTGCCTGACTGT
CCAGAAAGATCGCCTTTCTTAGTGGGTCCTGTGTCAGTATCCTTTAGCCCAGTGCCATCACTAG
CAGAGATCGTGGAGCGGAATCCCCGGGTGGAATCAGGGGGCCGGTACCGTCCTGCAGGATGTGA
GCCTCGCTCCCGAACAGCCATAATTGTGCCCCACCGTGCCCGGGAGCACCACCTCCGACTGCTA
CTCTATCACCTGCACCCCTTCCTGCAGCGCCAGCAGCTTGCTTATGGCATCTATGTCATCCACC
AGGCTGGAAATGGAACGTTTAACAGGGCCAAACTGCTGAACGTAGGGGTCAGGGAAGCCCTTCG
TGACGAAGAGTGGGACTGCTTGTTTTTACACGATGTGGACCTCCTTCCAGAAAACGACCATAAC
CTGTATGTGTGTGACCCCCGGGGACCCCGCCATGTTGCTGTCGCCATGAACAAGTTTGGATACA
GCCTTCCGTACCCCCAGTACTTTGGCGGAGTTTCAGCACTCACTCCTGACCAGTACCTGAAGAT
GAATGGCTTCCCCAATGAATACTGGGGCTGGGGTGGCGAGGATGACGACATTGCTACCAGGGTT
CGCCTGGCTGGGATGAAGATTTCCCGACCACCCACCTCTGTGGGACACTACAAGATGGTGAAGC
ACAGAGGGGATAAAGGAAATGAGGAAAACCCCCACAGATTTGACCTCCTGGTCCGTACCCAGAA
TTCTTGGACACAAGATGGAATGAACTCACTAACATACCGACTGCTGGCAAGAGAGCTGGGTCCT
CTCTACACCAACATCACTGCAGACATTGGGACTGACCCTCGGGGTCCCCGGGCTCCCTCTGGTC
CCCGATACCCACCAGGTTCCTCCCAGGCCTTCCGTCAGGAGATGCTGCAACGCCGGCCCCCAGC
TAGGCCTGGCCCTCTGCCTACTGCCAACCACACAGCTCCCCATGGTTCACACTGACTCTTCTCT
GCCCACTGTAATCATGAAACTAAATGGGAGGGGTCGAGTTCCTCATACCCTCTGCTCCTCACTG
CTTTGAGGGATGTGAGGGACTTTACTGCTGTGCTAGGGGGCAGGGACCTCTCCTCACTACTAGA
TTGGAGCTGGGCTCCTCTAGACCTGGAGGTTCCTCTTTCTAGGGGCCACCTGTCAGGGCTTATG
ACTGTGAATCTTTGATGTCATTTTATGTGACAAATCCTGGGAGTCCTCTGCCCCTGGGGTTAGG
AGCAGGGCTGGATCCCACGTCCCTTCCTCGTCTGTGGACATTGCTCTTTCAAGAGTGATCTGGC
TTCTCCTGGGACCTCTGTGAATATTTATTCTATTTATGATGGTTCCTGAGAAGCTGTCTGGAAG
AGGAAACCCCTAGCTAGGCATTTCCTGCGAGTGCTGGAGTGACTCCTCTGGTCTTGACCCAGGG
GGCAGGGGCTGGGATTTTGATATCTTTTCTAATAAAGGACTTTGTCTCACAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006250253 ⟹ XP_006250315

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,223,827 - 86,229,886 (+)	NCBI
mRatBN7.2	13	83,691,378 - 83,697,448 (+)	NCBI
Rnor_6.0	13	89,643,847 - 89,649,880 (+)	NCBI
Rnor_5.0	13	94,270,736 - 94,276,746 (+)	NCBI

Sequence:

show sequence

ACGCCCCGTGACGTCAGACTCCGCCCCCAGCGCCCGCTTCCAAGATGGCGGCAGCGATGCTTGC
CCGGTTGTCCGGGTGGCGGTGACGACGGGAAGCAGACCAGGTGACTGGTTATCCTTGATCATTT
TTGGTTCCCGCTGGTCCCAGATTGGCTGTTGGGATGCTTGTTTTCTGTCCTCTGTGACAGTTGA
AATTTGAGATAATGCCTCATTTTTCTGCTCCCCGGGGACCTCCTGGAGCCCCCATGATTCGGAA
AAAGACAGCTTGAGCACAGAAGTCCCTTCACTTCTTACCTAGCCCTCAGGTCGAGATGTTGCGG
AGGCTGCTGGAGAGGCCCTGCACACTGGCCCTGCTTGTGGGCTCCCAACTGGCAGTTATGATGT
ATCTGTCACTAGGGGGCTTCCGAAGTCTTAGTGCCCTGTTTGGTCGAGATCCAGGCCCAACATT
CGACTATTCTCATCCCCATGATGTCTATAGTAACCTCAGTCACCTGCCTGGAGCCCCTGGAGCT
GCAGGGGCTCCTCTAGCTCAAGTTCTGCCTGACTGTCCAGAAAGATCGCCTTTCTTAGTGGGTC
CTGTGTCAGTATCCTTTAGCCCAGTGCCATCACTAGCAGAGATCGTGGAGCGGAATCCCCGGGT
GGAATCAGGGGGCCGGTACCGTCCTGCAGGATGTGAGCCTCGCTCCCGAACAGCCATAATTGTG
CCCCACCGTGCCCGGGAGCACCACCTCCGACTGCTACTCTATCACCTGCACCCCTTCCTGCAGC
GCCAGCAGCTTGCTTATGGCATCTATGTCATCCACCAGGCTGGAAATGGAACGTTTAACAGGGC
CAAACTGCTGAACGTAGGGGTCAGGGAAGCCCTTCGTGACGAAGAGTGGGACTGCTTGTTTTTA
CACGATGTGGACCTCCTTCCAGAAAACGACCATAACCTGTATGTGTGTGACCCCCGGGGACCCC
GCCATGTTGCTGTCGCCATGAACAAGTTTGGATACAGCCTTCCGTACCCCCAGTACTTTGGCGG
AGTTTCAGCACTCACTCCTGACCAGTACCTGAAGATGAATGGCTTCCCCAATGAATATTGGGGC
TGGGGTGGCGAGGATGACGACATTGCTACCAGGGTTCGCCTGGCTGGGATGAAGATTTCCCGAC
CACCCACCTCTGTGGGACACTACAAGATGGTGAAGCACAGAGGGGATAAAGGAAATGAGGAAAA
CCCCCACAGATTTGACCTCCTGGTCCGTACCCAGAATTCTTGGACACAAGATGGAATGAACTCA
CTAACATACCGACTGCTGGCAAGAGAGCTGGGTCCTCTCTACACCAACATCACTGCAGACATTG
GGACTGACCCTCGGGGTCCCCGGGCTCCCTCTGGTCCCCGATACCCACCAGGTTCCTCCCAGGC
CTTCCGTCAGGAGATGCTGCAACGCCGGCCCCCAGCTAGGCCTGGCCCTCTGCCTACTGCCAAC
CACACAGCTCCCCATGGTTCACACTGACTCTTCTCTGCCCACTGTAATCATGAAACTAAATGGG
AGGGGTCGAGTTCCTCATACCCTCTGCTCCTCACTGCTTTGAGGGATGTGAGGGACTTTACTGC
TGTGCTAGGGGGCAGGGACCTCTCCTCACTACTAGATTGGAGCTGGGCTCCTCTAGACCTGGAG
GTTCCTCTTTCTAGGGGCCACCTGTCAGGGCTTATGACTGTGAATCTTTGATGTCATTTTATGT
GACAAATCCTGGGAGTCCTCTGCCCCTGGGGTTAGGAGCAGGGCTGGACCCCACGTCCCTTCCT
CGTCTGTGGACATTGCTCTTTCAAGAGTGATCTGGCTTCTCCTGGGACCTCTGTGAATATTTAT
TCTATTTATGATGGTTCCTGAGAAGCTGTCTGGAAGAGGAAACCCCTAGCTAGGCATTTCCTGC
GAGTGCTGGAGTGACTCCTCTGGTCTTGACCCAGGGGGCAGGGGCTGGGATTTTGATATCTTTT
CTAATAAAGGACTTTGTCTCACCTTTGCTTGTAA

hide sequence

RefSeq Acc Id:

XM_006250254 ⟹ XP_006250316

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	86,223,827 - 86,229,886 (+)	NCBI
mRatBN7.2	13	83,691,378 - 83,697,448 (+)	NCBI
Rnor_6.0	13	89,643,847 - 89,649,880 (+)	NCBI
Rnor_5.0	13	94,270,736 - 94,276,746 (+)	NCBI

Sequence:

show sequence

ACGCCCCGTGACGTCAGACTCCGCCCCCAGCGCCCGCTTCCAAGATGGCGGCAGCGATGCTTGC
CCGGTTGTCCGGGTGGCGGTGACGACGGGAAGCAGACCAGGTGACTGGTTATCCTTGATCATTT
TTGGTTCCCGCTGGTCCCAGATTGGCTGTTGGGATGCTTGTTTTCTGTCCTCTGTGACAGTTGA
AATTTGAGATAATGCCTCATTTTTCTGCTCCCCGGGGACCTCCTGGAGCCCCCATGATTCGGAA
AAAGACAGCTTGAGCACAGTGTTCGTTCCTTTCTGTGACTTTGTTCTCTGCCTGTTTTTTCTTC
CTTTCCCTGGCCGCACTTTCATCTCTACCTGCTGATGTCTGTCTTCTGGCTTGCTCTCTTCCTG
TTTGCTTCCAGAAGTCCCTTCACTTCTTACCTAGCCCTCAGGTCGAGATGTTGCGGAGGCTGCT
GGAGAGGCCCTGCACACTGGCCCTGCTTGTGGGCTCCCAACTGGCAGTTATGATGTATCTGTCA
CTAGGGGGCTTCCGAAGTCTTAGTGCCCTGTTTGGTCGAGATCCAGGCCCAACATTCGACTATT
CTCATCCCCATGATGTCTATAGTAACCTCAGTCACCTGCCTGGAGCCCCTGGAGCTGCAGGGGC
TCCTCTAGCTCAAGTTCTGCCTGACTGTCCAGAAAGATCGCCTTTCTTAGTGGGTCCTGTGTCA
GTATCCTTTAGCCCAGTGCCATCACTAGCAGAGATCGTGGAGCGGAATCCCCGGGTGGAATCAG
GGGGCCGGTACCGTCCTGCAGGATGTGAGCCTCGCTCCCGAACAGCCATAATTGTGCCCCACCG
TGCCCGGGAGCACCACCTCCGACTGCTACTCTATCACCTGCACCCCTTCCTGCAGCGCCAGCAG
CTTGCTTATGGCATCTATGTCATCCACCAGGCTGGAAATGGAACGTTTAACAGGGCCAAACTGC
TGAACGTAGGGGTCAGGGAAGCCCTTCGTGACGAAGAGTGGGACTGCTTGTTTTTACACGATGT
GGACCTCCTTCCAGAAAACGACCATAACCTGTATGTGTGTGACCCCCGGGGACCCCGCCATGTT
GCTGTCGCCATGAACAAGTTTGGATACAGCCTTCCGTACCCCCAGTACTTTGGCGGAGTTTCAG
CACTCACTCCTGACCAGTACCTGAAGATGAATGGCTTCCCCAATGAATATTGGGGCTGGGGTGG
CGAGGATGACGACATTGCTACCAGGGTTCGCCTGGCTGGGATGAAGATTTCCCGACCACCCACC
TCTGTGGGACACTACAAGATGGTGAAGCACAGAGGGGATAAAGGAAATGAGGAAAACCCCCACA
GATTTGACCTCCTGGTCCGTACCCAGAATTCTTGGACACAAGATGGAATGAACTCACTAACATA
CCGACTGCTGGCAAGAGAGCTGGGTCCTCTCTACACCAACATCACTGCAGACATTGGGACTGAC
CCTCGGGGTCCCCGGGCTCCCTCTGGTCCCCGATACCCACCAGGTTCCTCCCAGGCCTTCCGTC
AGGAGATGCTGCAACGCCGGCCCCCAGCTAGGCCTGGCCCTCTGCCTACTGCCAACCACACAGC
TCCCCATGGTTCACACTGACTCTTCTCTGCCCACTGTAATCATGAAACTAAATGGGAGGGGTCG
AGTTCCTCATACCCTCTGCTCCTCACTGCTTTGAGGGATGTGAGGGACTTTACTGCTGTGCTAG
GGGGCAGGGACCTCTCCTCACTACTAGATTGGAGCTGGGCTCCTCTAGACCTGGAGGTTCCTCT
TTCTAGGGGCCACCTGTCAGGGCTTATGACTGTGAATCTTTGATGTCATTTTATGTGACAAATC
CTGGGAGTCCTCTGCCCCTGGGGTTAGGAGCAGGGCTGGACCCCACGTCCCTTCCTCGTCTGTG
GACATTGCTCTTTCAAGAGTGATCTGGCTTCTCCTGGGACCTCTGTGAATATTTATTCTATTTA
TGATGGTTCCTGAGAAGCTGTCTGGAAGAGGAAACCCCTAGCTAGGCATTTCCTGCGAGTGCTG
GAGTGACTCCTCTGGTCTTGACCCAGGGGGCAGGGGCTGGGATTTTGATATCTTTTCTAATAAA
GGACTTTGTCTCACCTTTGCTTGTAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001009539	(Get FASTA)	NCBI Sequence Viewer
	NP_001416870	(Get FASTA)	NCBI Sequence Viewer
	NP_001416871	(Get FASTA)	NCBI Sequence Viewer
	NP_001416872	(Get FASTA)	NCBI Sequence Viewer
	XP_006250315	(Get FASTA)	NCBI Sequence Viewer
	XP_006250316	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH61812	(Get FASTA)	NCBI Sequence Viewer
	EDL94620	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000004735
	ENSRNOP00000004735.4
GenBank Protein	Q6P768	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001009539 ⟸ NM_001009539

- UniProtKB:

Q6P768 (UniProtKB/Swiss-Prot), A6JFW4 (UniProtKB/TrEMBL), A0A8I6ADZ3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLRRLLERPCTLALLVGSQLAVMMYLSLGGFRSLSALFGRDPGPTFDYSHPHDVYSNLSHLPGA
PGAAGAPLAQVLPDCPERSPFLVGPVSVSFSPVPSLAEIVERNPRVESGGRYRPAGCEPRSRTA
IIVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDEEWDC
LFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFPNE
YWGWGGEDDDIATRVRLAGMKISRPPTSVGHYKMVKHRGDKGNEENPHRFDLLVRTQNSWTQDG
MNSLTYRLLARELGPLYTNITADIGTDPRGPRAPSGPRYPPGSSQAFRQEMLQRRPPARPGPLP
TANHTAPHGSH

hide sequence

RefSeq Acc Id:

XP_006250316 ⟸ XM_006250254

- Peptide Label:

isoform X1

- Sequence:

show sequence

MLRRLLERPCTLALLVGSQLAVMMYLSLGGFRSLSALFGRDPGPTFDYSHPHDVYSNLSHLPGA
PGAAGAPLAQVLPDCPERSPFLVGPVSVSFSPVPSLAEIVERNPRVESGGRYRPAGCEPRSRTA
IIVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDEEWDC
LFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFPNE
YWGWGGEDDDIATRVRLAGMKISRPPTSVGHYKMVKHRGDKGNEENPHRFDLLVRTQNSWTQDG
MNSLTYRLLARELGPLYTNITADIGTDPRGPRAPSGPRYPPGSSQAFRQEMLQRRPPARPGPLP
TANHTAPHGSH

hide sequence

RefSeq Acc Id:

XP_006250315 ⟸ XM_006250253

- Peptide Label:

isoform X1

- Sequence:

show sequence

MLRRLLERPCTLALLVGSQLAVMMYLSLGGFRSLSALFGRDPGPTFDYSHPHDVYSNLSHLPGA
PGAAGAPLAQVLPDCPERSPFLVGPVSVSFSPVPSLAEIVERNPRVESGGRYRPAGCEPRSRTA
IIVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDEEWDC
LFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFPNE
YWGWGGEDDDIATRVRLAGMKISRPPTSVGHYKMVKHRGDKGNEENPHRFDLLVRTQNSWTQDG
MNSLTYRLLARELGPLYTNITADIGTDPRGPRAPSGPRYPPGSSQAFRQEMLQRRPPARPGPLP
TANHTAPHGSH

hide sequence

Ensembl Acc Id:

ENSRNOP00000004735 ⟸ ENSRNOT00000004735

Ensembl Acc Id:

ENSRNOP00000090652 ⟸ ENSRNOT00000108060

Protein Domains

Galactosyltransferase C-terminal Galactosyltransferase N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6P768-F1-model_v2	AlphaFold	Q6P768	1-395	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698999

Promoter ID:

EPDNEW_R9524

Type:

multiple initiation site

Name:

B4galt3_1

Description:

beta-1,4-galactosyltransferase 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	89,643,869 - 89,643,929	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359221	AgrOrtholog
BioCyc Gene	G2FUF-17379	BioCyc
Ensembl Genes	ENSRNOG00000003551	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000004735	ENTREZGENE
	ENSRNOT00000004735.6	UniProtKB/Swiss-Prot
Gene3D-CATH	Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:5598658	IMAGE-MGC_LOAD
InterPro	Galactosyl_T	UniProtKB/Swiss-Prot
	Galactosyl_T_C	UniProtKB/Swiss-Prot
	Galactosyl_T_N	UniProtKB/Swiss-Prot
	Nucleotide-diphossugar_trans	UniProtKB/Swiss-Prot
KEGG Report	rno:494342	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:72586	IMAGE-MGC_LOAD
NCBI Gene	494342	ENTREZGENE
PANTHER	BETA-1,4-GALACTOSYLTRANSFERASE 3	UniProtKB/Swiss-Prot
	PTHR19300	UniProtKB/Swiss-Prot
Pfam	Glyco_transf_7C	UniProtKB/Swiss-Prot
	Glyco_transf_7N	UniProtKB/Swiss-Prot
PhenoGen	B4galt3	PhenoGen
PRINTS	B14GALTRFASE	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000003551	RatGTEx
Superfamily-SCOP	SSF53448	UniProtKB/Swiss-Prot
UniProt	A0A8I6ADZ3	ENTREZGENE
	A6JFW4	ENTREZGENE, UniProtKB/TrEMBL
	B4GT3_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-22	B4galt3	beta-1,4-galactosyltransferase 3	B4galt3	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-11-17	B4galt3	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3			Symbol and Name updated	1299863	APPROVED
2005-07-29	MGC72586	similar to UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - KEGG (archival)