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Gene: Dmac2l (distal membrane arm assembly component 2 like) Rattus norvegicus

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Symbol:

Dmac2l

Name:

distal membrane arm assembly component 2 like

RGD ID:

1359208

Description:

Predicted to enable metal ion binding activity. Predicted to be involved in ATP biosynthetic process and proton transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be part of proton-transporting ATP synthase complex. Predicted to be active in cytoplasm. Orthologous to human DMAC2L (distal membrane arm assembly component 2 like); INTERACTS WITH 1,3-dinitrobenzene; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ATP synthase subunit s, mitochondrial; ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s; ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s (factor B); ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B); ATP synthase-coupling factor B; Atp5s; distal membrane arm assembly complex 2 like; Factor B; MGC94488; mitochondrial ATP synthase regulatory component factor B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DMAC2L (distal membrane arm assembly component 2 like)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Dmac2l (distal membrane arm assembly component 2 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Dmac2l (distal membrane arm assembly component 2 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DMAC2L (distal membrane arm assembly component 2 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DMAC2L (distal membrane arm assembly component 2 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Dmac2l (distal membrane arm assembly component 2 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DMAC2L (distal membrane arm assembly component 2 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DMAC2L (distal membrane arm assembly component 2 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Dmac2l (distal membrane arm assembly component 2 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Dmac2l (distal membrane arm assembly component 2 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	DMAC2L (distal membrane arm assembly component 2 like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Dmac2l (distal membrane arm assembly component 2 like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG10731	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG10731	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C05C8.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Caenorhabditis elegans (roundworm):	C05C8.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	dmac2l	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	R02D5.8	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	dmac2l	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	dmac2l	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	93,941,605 - 93,959,932 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	93,941,690 - 93,960,662 (+)	Ensembl				GRCr8
mRatBN7.2	6	88,205,580 - 88,223,934 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	88,205,700 - 88,223,933 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	88,604,398 - 88,622,632 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	88,903,850 - 88,922,084 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	88,343,589 - 88,361,823 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	92,057,782 - 92,076,022 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	92,057,807 - 92,076,021 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	101,507,306 - 101,525,542 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	91,771,989 - 91,799,619 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	86,700,675 - 86,718,905 (+)	NCBI		Celera
RGSC_v3.1	6	91,775,444 - 91,803,074 (+)	NCBI
Cytogenetic Map	6	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-dexrazoxane (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1,3-dinitrobenzene (EXP)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole (EXP)

6-propyl-2-thiouracil (EXP)

aconitine (EXP)

all-trans-retinoic acid (ISO)

amiodarone (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzbromarone (EXP)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

carbon nanotube (ISO)

clofibrate (EXP)

cobalt dichloride (EXP,ISO)

copper atom (ISO)

copper(0) (ISO)

coumestrol (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (EXP,ISO)

entinostat (ISO)

ethanol (ISO)

fenvalerate (EXP)

finasteride (EXP)

fluoranthene (ISO)

flutamide (ISO)

formaldehyde (ISO)

gentamycin (EXP)

glycidyl methacrylate (ISO)

GSK-J4 (ISO)

indole-3-methanol (EXP)

irinotecan (ISO)

isoniazide (ISO)

isoprenaline (EXP)

L-ethionine (EXP)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methylmercury chloride (ISO)

niclosamide (ISO)

okadaic acid (ISO)

omeprazole (EXP)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

pirinixic acid (EXP,ISO)

pregnenolone 16alpha-carbonitrile (EXP)

progesterone (ISO)

rotenone (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

sunitinib (ISO)

tetrachloromethane (EXP)

thapsigargin (ISO)

theophylline (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ATP biosynthetic process (IEA)

monoatomic ion transport (IEA)

proton transmembrane transport (IEA)

Cellular Component

cytoplasm (IBA)

mitochondrial inner membrane (IEA)

mitochondrion (IEA)

proton-transporting ATP synthase complex (IEA)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Evidence for the involvement of coupling factor B in the H+ channel of the mitochondrial H+-ATPase.	Sanadi DR, etal., Proc Natl Acad Sci U S A 1984 Mar;81(5):1371-4.
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:14651853	PMID:15489334	PMID:18614015	PMID:34800366

Genomics

Comparative Map Data

Dmac2l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	93,941,605 - 93,959,932 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	93,941,690 - 93,960,662 (+)	Ensembl				GRCr8
mRatBN7.2	6	88,205,580 - 88,223,934 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	88,205,700 - 88,223,933 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	88,604,398 - 88,622,632 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	88,903,850 - 88,922,084 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	88,343,589 - 88,361,823 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	92,057,782 - 92,076,022 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	92,057,807 - 92,076,021 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	101,507,306 - 101,525,542 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	91,771,989 - 91,799,619 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	86,700,675 - 86,718,905 (+)	NCBI		Celera
RGSC_v3.1	6	91,775,444 - 91,803,074 (+)	NCBI
Cytogenetic Map	6	q24	NCBI

DMAC2L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	50,311,516 - 50,327,957 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	50,312,301 - 50,335,558 (+)	Ensembl			hg38	GRCh38
GRCh37	14	50,778,234 - 50,794,675 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	49,848,797 - 49,862,418 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	14	49,848,796 - 49,859,493	NCBI
Celera	14	30,646,177 - 30,660,090 (+)	NCBI		Celera
Cytogenetic Map	14	q21.3	NCBI
HuRef	14	30,904,512 - 30,918,211 (+)	NCBI		HuRef
CHM1_1	14	50,717,681 - 50,731,593 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	44,517,742 - 44,534,175 (+)	NCBI		T2T-CHM13v2.0

Dmac2l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	69,771,687 - 69,791,439 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	69,771,724 - 69,791,434 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	12	69,724,913 - 69,744,665 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	69,724,950 - 69,744,660 (+)	Ensembl			mm10	GRCm38
MGSCv37	12	70,825,949 - 70,845,645 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	12	70,643,567 - 70,663,263 (+)	NCBI		MGSCv36	mm8
Celera	12	70,815,362 - 70,840,572 (+)	NCBI		Celera
Cytogenetic Map	12	C2	NCBI
cM Map	12	28.94	NCBI

Dmac2l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	12,474,063 - 12,484,984 (-)	Ensembl
ChiLan1.0	NW_004955409	12,473,891 - 12,485,066 (-)	NCBI	ChiLan1.0	ChiLan1.0

DMAC2L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	51,451,472 - 51,469,328 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	50,665,180 - 50,685,831 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	30,901,989 - 30,917,742 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	49,205,309 - 49,220,464 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	49,206,098 - 49,229,325 (+)	Ensembl			panPan2	panpan1.1

DMAC2L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	26,760,350 - 26,770,971 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	26,760,530 - 26,770,920 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	26,513,977 - 26,524,400 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	26,938,103 - 26,948,522 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	26,938,131 - 26,949,378 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	26,593,051 - 26,603,459 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	26,665,493 - 26,675,892 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	26,984,329 - 26,994,738 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Dmac2l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	58,953,034 - 58,964,676 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936495	15,228,075 - 15,239,021 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936495	15,227,023 - 15,238,638 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DMAC2L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	180,068,973 - 180,081,412 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	180,069,157 - 180,081,332 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	200,410,348 - 200,422,029 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DMAC2L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	27,383,317 - 27,398,331 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	27,383,477 - 27,397,323 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666053	15,706,020 - 15,730,643 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dmac2l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	18,539,851 - 18,553,864 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624731	18,544,168 - 18,554,473 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Dmac2l
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	83,390,970 - 83,409,406 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Dmac2l
385 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	581
Count of miRNA genes:	267
Interacting mature miRNAs:	333
Transcripts:	ENSRNOT00000006509
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293088	Iddm28	Insulin dependent diabetes mellitus QTL 28	5.21		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	68767270	135411972	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	88019181	136741135	Rat
4889933	Bss88	Bone structure and strength QTL 88	3.8		tibia size trait (VT:0100001)	tibia total bone volume (CMO:0001724)	6	53684921	98684921	Rat
61329	Eae9	Experimental allergic encephalomyelitis QTL 9	3.7		body mass (VT:0001259)	change in body weight (CMO:0002045)	6	84490437	129490437	Rat
5684992	Bmd83	Bone mineral density QTL 82	4.8		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	6	53684921	98684921	Rat
1331789	Rf37	Renal function QTL 37	3.224		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	86494122	112380234	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	71278722	116278722	Rat
70176	Mcsm1	Mammary carcinoma susceptibility modifier QTL 1			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	64367996	109367996	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	93560258	136550638	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	90871046	135871046	Rat
1558641	Cm47	Cardiac mass QTL 47	2.9	0.001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	6	63457441	94939581	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	79198463	144254945	Rat
737827	Hcar11	Hepatocarcinoma resistance QTL 11	4.4		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	6	46050607	116278722	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	93778632	138778632	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	20859430	113082285	Rat
2293837	Kiddil1	Kidney dilation QTL 1	3.7		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	86867923	110125012	Rat
2293842	Kiddil3	Kidney dilation QTL 3	4.3		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	86867923	110125012	Rat
4889848	Pur25	Proteinuria QTL 25	14	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	63037319	95934232	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	90871046	135871046	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	93560258	136550638	Rat
5684963	Bss99	Bone structure and strength QTL 99	3.1		tibia area (VT:1000281)	tibia area measurement (CMO:0001382)	6	53684921	98684921	Rat
1576302	Schws4	Schwannoma susceptibility QTL 4		0.0078	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	78204640	123204640	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	93560258	136550638	Rat
1300075	Glom7	Glomerulus QTL 7	5.6	0.0000002	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	6	76937178	121937178	Rat
6893332	Cm74	Cardiac mass QTL 74	0.4	0.64	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	63457441	94939581	Rat

Markers in Region

RH133675

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	88,223,501 - 88,223,697 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	92,075,590 - 92,075,785	NCBI	Rnor6.0
Rnor_5.0	6	101,525,110 - 101,525,305	UniSTS	Rnor5.0
RGSC_v3.4	6	91,799,187 - 91,799,382	UniSTS	RGSC3.4
Celera	6	86,718,473 - 86,718,668	UniSTS
RH 3.4 Map	6	627.8	UniSTS
Cytogenetic Map	6	q24	UniSTS

AI556394

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	6	93,955,860 - 93,956,559 (+)	Marker Load Pipeline
mRatBN7.2	6	88,219,862 - 88,220,561 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	92,071,945 - 92,072,643	NCBI	Rnor6.0
Rnor_5.0	6	101,521,474 - 101,522,172	UniSTS	Rnor5.0
RGSC_v3.4	6	91,786,152 - 91,786,850	UniSTS	RGSC3.4
Celera	6	86,714,838 - 86,715,536	UniSTS
RH 3.4 Map	6	630.5	UniSTS
Cytogenetic Map	6	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001007749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000006509 ⟹ ENSRNOP00000006509

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	93,941,690 - 93,960,662 (+)	Ensembl
mRatBN7.2 Ensembl	6	88,205,700 - 88,223,933 (+)	Ensembl
Rnor_6.0 Ensembl	6	92,057,807 - 92,076,021 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000132134 ⟹ ENSRNOP00000101455

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	93,952,658 - 93,960,662 (+)	Ensembl

RefSeq Acc Id:

NM_001007749 ⟹ NP_001007750

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	93,941,698 - 93,959,932 (+)	NCBI
mRatBN7.2	6	88,205,700 - 88,223,934 (+)	NCBI
Rnor_6.0	6	92,057,807 - 92,076,022 (+)	NCBI
Rnor_5.0	6	101,507,306 - 101,525,542 (+)	NCBI
RGSC_v3.4	6	91,771,989 - 91,799,619 (+)	RGD
Celera	6	86,700,675 - 86,718,905 (+)	RGD

Sequence:

show sequence

CGGGCCGGCTCGACGCAGGGACGCCGCACGCCGTGAGTAGAGGAACGAGGGCGGAGGCAGGGAC
CGGGTGGTGGTTCCACTCTCCCGAGCCTCCGCCAGCACAGGCTTGACTGGACGCCGGCGCCGTT
CCGCCACAGAAGGCCGGGCGTGGCGGGGTCACCTCTGGCTCCCGCGACCTCTCCTTCGGCCACG
CCTCCTGGTCAGTTGGCAACGCTCTGGCCCGGGAGCCGGGGGCTAAGCCACCTCCTGCCGCTCC
CTGTCACTACCGGACTGGTAGCCCGCAGGTTTCTGGGCTCTTCGTGGGTCTCCTGATCAATGAT
GATGTTTGGAAAAATTTCGAGGCAGCTCTTCAGCTTAAAGAAAATCCCATGGTCATGTGACTCC
AGATACTTCTGGGAGTGGTTGAATACAGTGTTTAATAAAGTAGATTATGAACGCATCAAGGATG
TTGGCCCTGACAGGGCAGCTTCTGAGTGGCTACTTCGGTGTGGAGCCAAAGTACGATACTGTGG
CCACCAGAAGTGGCTACAGGACTATAACAAACTCCCAGGAGGCTCTGTGGACAGATACAAGATT
CAAGCAATTGATGCCACCGATTCTTGTATCATGGACATTGGGTTTGATCACTTGGTGGGCCTAG
AGCATGTTGAAAGAATAACACTGTGCAGGTGTCATTATATTGAAGATAACTGTTTGCAGAGGCT
TAGTCAACTTGAAAATTTACGAAAAAGCCTATTGGAGTTGGAAATAATCGCCTGTGGAAATGTC
ACGGACAACGGCGTCATTGCTTTGCGACACTTTAAGAACCTCAAGTATTTGTTCTTAAGTGATC
TTCCTGGAATAAAAGATAAAGAGTACCTTGCCGAAGTCTTTACTAAAGCACTGCCTTCTCTGGA
ACTAAAATTAAACCTGAAGTAAAATAAGTGTCTGGTTTCACTATTAAGGATCCCTTGAAATTGC
TGATACTAGATAGCTACAAATATTACATAATCAGCAGTAGAACTGTGAAAATGACTTAGAAATG
GAGAATGGATCAGGAAGAGAATAAATAATCAGAAGTCACTCACTGAAGTCACTTAGTTGAAAGT
GAGAAATTATGTACACTGAATCATTTTTAAACTGTAACAGCATTTTAATATATTTCTCATTTAT
ATATAAATATATATGTAGGTGTTGATGCAGAGTTTTTTAAACTGCAATGTCAATACTTTTTCTT
ACAATAATTTGCATCACACGGAAGCATGTTACGGTAAATGTGCAGTTATGAAAACCTGAAAGCT
CGGTGACAGACCCGCTGATGGAGTCCGGGTACGAAGTTGTCGGTGTTGAGAGCAGCGTGCTGTG
TTGCTTCCCAGGATTTGCATGATTGCTCAAGCTCCTGCATTGCTGCATTGCTAATAGTGCATAC
TGTTAAAGACATCCTTTCTCAGGAAGAGTGCTGCTGGCTACTTGGTCCTACTTTAAAGCGTGGG
CTACGTCGTGCTGGTTAAAACAGAACGCAGTACTTATCTATACCCAACTAGTTTTGCTGGTAAA
ACAAACAGGAAATGGGCTGCCCTACTCCTCATCCGCTTCAGACAGGAATGTGTTATCCTTAGAA
TCTAATTTTGCTATCTCTCTCTGAATTCTACCTTCTATGAACTCAGGGGATATAAAAATATAAA
TACAAAGATGAATTTATGTCTAGAAAGCACCAATGAAGAATGTCTGAGTAGATGAAGGCTAGTC
TTTAATGTCTTGAAGTAGCCGCAGTCCCACCGCTGTTAGCTGTGTGCTGTAGCCGTGTAGGCTT
CTGGATGTCTGGCTGCCAGCTGCTGCATATAAATTAACTAGGAATGGCCTTCGGCAGCGCAGCA
CTCAGGCAGAAAAGTGAGCTTCAGCTATACTTAGAGCTATGCTTAAAGAAAAACACCTAGTTCA
TGGGGAAGTCCAAATTACATACGGCACAAGTCAGAAAACAGTAATAAAAACAAAGATAAGGTAA
AACTGTAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006240174 ⟹ XP_006240236

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	93,941,669 - 93,959,932 (+)	NCBI
mRatBN7.2	6	88,205,580 - 88,223,934 (+)	NCBI
Rnor_6.0	6	92,057,791 - 92,076,022 (+)	NCBI
Rnor_5.0	6	101,507,306 - 101,525,542 (+)	NCBI

Sequence:

show sequence

AAAAGGTAGAGGGCGACGGGCCGGCTCGACGCAGGGACGCCGCACGCCGTGAGTAGAGGAACGA
GGGCGGAGGCAGGGACCGGGTGGTGGTTCCACTCTCCCGAGCCTCCGCCAGCACAGGCTTGACT
GGACGCCGGCGCCGTTCCGCCACAGAAGGCCGGGCGTGGCGGGGTCACCTCTGGCTCCCGCGAC
CTCTCCTTCGGCCACGCCTCCTGATCAATGATGATGTTTGGAAAAATTTCGAGGCAGCTCTTCA
GCTTAAAGAAAATCCCATGGTCATGTGACTCCAGATACTTCTGGGAGTGGTTGAATACAGTGTT
TAATAAAGTAGATTATGAACGCATCAAGGATGTTGGCCCTGACAGGGCAGCTTCTGAGTGGCTA
CTTCGGTGTGGAGCCAAAGTACGATACTGTGGCCACCAGAAGTGGCTACAGGACTATAACAAAC
TCCCAGGAGGCTCTGTGGACAGATACAAGATTCAAGCAATTGATGCCACCGATTCTTGTATCAT
GGACATTGGGTTTGATCACTTGGTGGGCCTAGAGCATGTTGAAAGAATAACACTGTGCAGGTGT
CATTATATTGAAGATAACTGTTTGCAGAGGCTTAGTCAACTTGAAAATTTACGAAAAAGCCTAT
TGGAGTTGGAAATAATCGCCTGTGGAAATGTCACGGACAACGGCGTCATTGCTTTGCGACACTT
TAAGAACCTCAAGTATTTGTTCTTAAGTGATCTTCCTGGAATAAAAGATAAAGAGTACCTTGCC
GAAGTCTTTACTAAAGCACTGCCTTCTCTGGAACTAAAATTAAACCTGAAGTAAAATAAGTGTC
TGGTTTCACTATTAAGGATCCCTTGAAATTGCTGATACTAGATAGCTACAAATATTACATAATC
AGCAGTAGAACTGTGAAAATGACTTAGAAATGGAGAATGGATCAGGAAGAGAATAAATAATCAG
AAGTCACTCACTGAAGTCACTTAGTTGAAAGTGAGAAATTATGTACACTGAATCATTTTTAAAC
TGTAACAGCATTTTAATATATTTCTCATTTATATATAAATATATATGTAGGTGTTGATGCAGAG
TTTTTTAAACTGCAATGTCAATACTTTTTCTTACAATAATTTGCATCACACGGAAGCATGTTAC
GGTAAATGTGCAGTTATGAAAACCTGAAAGCTCGGTGACAGACCCGCTGATGGAGTCCGGGTAC
GAAGTTGTCGGTGTTGAGAGCAGCGTGCTGTGTTGCTTCCCAGGATTTGCATGATTGCTCAAGC
TCCTGCATTGCTGCATTGCTAATAGTGCATACTGTTAAAGACATCCTTTCTCAGGAAGAGTGCT
GCTGGCTACTTGGTCCTACTTTAAAGCGTGGGCTACGTCGTGCTGGTTAAAACAGAACGCAGTA
CTTATCTATACCCAACTAGTTTTGCTGGTAAAACAAACAGGAAATGGGCTGCCCTACTCCTCAT
CCGCTTCAGACAGGAATGTGTTATCCTTAGAATCTAATTTTGCTATCTCTCTCTGAATTCTACC
TTCTATGAACTCAGGGGATATAAAAATATAAATACAAAGATGAATTTATGTCTAGAAAGCACCA
ATGAAGAATGTCTGAGTAGATGAAGGCTAGTCTTTAATGTCTTGAAGTAGCCGCAGTCCCACCG
CTGTTAGCTGTGTGCTGTAGCCGTGTAGGCTTCTGGATGTCTGGCTGCCAGCTGCTGCATATAA
ATTAACTAGGAATGGCCTTCGGCAGCGCAGCACTCAGGCAGAAAAGTGAGCTTCAGCTATACTT
AGAGCTATGCTTAAAGAAAAACACCTAGTTCATGGGGAAGTCCAAATTACATACGGCACAAGTC
AGAAAACAGTAATAAAAACAAAGATAAGGTAAAACTGTA

hide sequence

RefSeq Acc Id:

XM_006240175 ⟹ XP_006240237

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	93,941,658 - 93,959,932 (+)	NCBI
mRatBN7.2	6	88,206,017 - 88,223,934 (+)	NCBI
Rnor_6.0	6	92,058,256 - 92,076,022 (+)	NCBI
Rnor_5.0	6	101,507,306 - 101,525,542 (+)	NCBI

Sequence:

show sequence

CTTATTGCAACAGCTGTGTGCAGGAGTTCGTAGAGACCAGGAAAGGGAGTAAGGGATCCTCTGG
AACTGGAAGTTTTTGAGCAACTGTGAGCCGTATAGGTCCTCAGATCAATGATGATGTTTGGAAA
AATTTCGAGGCAGCTCTTCAGCTTAAAGAAAATCCCATGGTCATGTGACTCCAGATACTTCTGG
GAGTGGTTGAATACAGTGTTTAATAAAGTAGATTATGAACGCATCAAGGATGTTGGCCCTGACA
GGGCAGCTTCTGAGTGGCTACTTCGGTGTGGAGCCAAAGTACGATACTGTGGCCACCAGAAGTG
GCTACAGGACTATAACAAACTCCCAGGAGGCTCTGTGGACAGATACAAGATTCAAGCAATTGAT
GCCACCGATTCTTGTATCATGGACATTGGGTTTGATCACTTGGTGGGCCTAGAGCATGTTGAAA
GAATAACACTGTGCAGGTGTCATTATATTGAAGATAACTGTTTGCAGAGGCTTAGTCAACTTGA
AAATTTACGAAAAAGCCTATTGGAGTTGGAAATAATCGCCTGTGGAAATGTCACGGACAACGGC
GTCATTGCTTTGCGACACTTTAAGAACCTCAAGTATTTGTTCTTAAGTGATCTTCCTGGAATAA
AAGATAAAGAGTACCTTGCCGAAGTCTTTACTAAAGCACTGCCTTCTCTGGAACTAAAATTAAA
CCTGAAGTAAAATAAGTGTCTGGTTTCACTATTAAGGATCCCTTGAAATTGCTGATACTAGATA
GCTACAAATATTACATAATCAGCAGTAGAACTGTGAAAATGACTTAGAAATGGAGAATGGATCA
GGAAGAGAATAAATAATCAGAAGTCACTCACTGAAGTCACTTAGTTGAAAGTGAGAAATTATGT
ACACTGAATCATTTTTAAACTGTAACAGCATTTTAATATATTTCTCATTTATATATAAATATAT
ATGTAGGTGTTGATGCAGAGTTTTTTAAACTGCAATGTCAATACTTTTTCTTACAATAATTTGC
ATCACACGGAAGCATGTTACGGTAAATGTGCAGTTATGAAAACCTGAAAGCTCGGTGACAGACC
CGCTGATGGAGTCCGGGTACGAAGTTGTCGGTGTTGAGAGCAGCGTGCTGTGTTGCTTCCCAGG
ATTTGCATGATTGCTCAAGCTCCTGCATTGCTGCATTGCTAATAGTGCATACTGTTAAAGACAT
CCTTTCTCAGGAAGAGTGCTGCTGGCTACTTGGTCCTACTTTAAAGCGTGGGCTACGTCGTGCT
GGTTAAAACAGAACGCAGTACTTATCTATACCCAACTAGTTTTGCTGGTAAAACAAACAGGAAA
TGGGCTGCCCTACTCCTCATCCGCTTCAGACAGGAATGTGTTATCCTTAGAATCTAATTTTGCT
ATCTCTCTCTGAATTCTACCTTCTATGAACTCAGGGGATATAAAAATATAAATACAAAGATGAA
TTTATGTCTAGAAAGCACCAATGAAGAATGTCTGAGTAGATGAAGGCTAGTCTTTAATGTCTTG
AAGTAGCCGCAGTCCCACCGCTGTTAGCTGTGTGCTGTAGCCGTGTAGGCTTCTGGATGTCTGG
CTGCCAGCTGCTGCATATAAATTAACTAGGAATGGCCTTCGGCAGCGCAGCACTCAGGCAGAAA
AGTGAGCTTCAGCTATACTTAGAGCTATGCTTAAAGAAAAACACCTAGTTCATGGGGAAGTCCA
AATTACATACGGCACAAGTCAGAAAACAGTAATAAAAACAAAGATAAGGTAAAACTGTA

hide sequence

RefSeq Acc Id:

XM_006240176 ⟹ XP_006240238

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	93,941,605 - 93,959,932 (+)	NCBI
mRatBN7.2	6	88,205,580 - 88,223,934 (+)	NCBI
Rnor_6.0	6	92,057,782 - 92,076,022 (+)	NCBI
Rnor_5.0	6	101,507,306 - 101,525,542 (+)	NCBI

Sequence:

show sequence

GGTGGAGGGAAAAGGTAGAGGGCGACGGGCCGGCTCGACGCAGGGACGCCGCACGCCATCAATG
ATGATGTTTGGAAAAATTTCGAGGCAGCTCTTCAGCTTAAAGAAAATCCCATGGTCATGTGACT
CCAGATACTTCTGGGAGTGGTTGAATACAGTGTTTAATAAAGTAGATTATGAACGCATCAAGGA
TGTTGGCCCTGACAGGGCAGCTTCTGAGTGGCTACTTCGGTGTGGAGCCAAAGTACGATACTGT
GGCCACCAGAAGTGGCTACAGGACTATAACAAACTCCCAGGAGGCTCTGTGGACAGATACAAGA
TTCAAGCAATTGATGCCACCGATTCTTGTATCATGGACATTGGGTTTGATCACTTGGTGGGCCT
AGAGCATGTTGAAAGAATAACACTGTGCAGGTGTCATTATATTGAAGATAACTGTTTGCAGAGG
CTTAGTCAACTTGAAAATTTACGAAAAAGCCTATTGGAGTTGGAAATAATCGCCTGTGGAAATG
TCACGGACAACGGCGTCATTGCTTTGCGACACTTTAAGAACCTCAAGTATTTGTTCTTAAGTGA
TCTTCCTGGAATAAAAGATAAAGAGTACCTTGCCGAAGTCTTTACTAAAGCACTGCCTTCTCTG
GAACTAAAATTAAACCTGAAGTAAAATAAGTGTCTGGTTTCACTATTAAGGATCCCTTGAAATT
GCTGATACTAGATAGCTACAAATATTACATAATCAGCAGTAGAACTGTGAAAATGACTTAGAAA
TGGAGAATGGATCAGGAAGAGAATAAATAATCAGAAGTCACTCACTGAAGTCACTTAGTTGAAA
GTGAGAAATTATGTACACTGAATCATTTTTAAACTGTAACAGCATTTTAATATATTTCTCATTT
ATATATAAATATATATGTAGGTGTTGATGCAGAGTTTTTTAAACTGCAATGTCAATACTTTTTC
TTACAATAATTTGCATCACACGGAAGCATGTTACGGTAAATGTGCAGTTATGAAAACCTGAAAG
CTCGGTGACAGACCCGCTGATGGAGTCCGGGTACGAAGTTGTCGGTGTTGAGAGCAGCGTGCTG
TGTTGCTTCCCAGGATTTGCATGATTGCTCAAGCTCCTGCATTGCTGCATTGCTAATAGTGCAT
ACTGTTAAAGACATCCTTTCTCAGGAAGAGTGCTGCTGGCTACTTGGTCCTACTTTAAAGCGTG
GGCTACGTCGTGCTGGTTAAAACAGAACGCAGTACTTATCTATACCCAACTAGTTTTGCTGGTA
AAACAAACAGGAAATGGGCTGCCCTACTCCTCATCCGCTTCAGACAGGAATGTGTTATCCTTAG
AATCTAATTTTGCTATCTCTCTCTGAATTCTACCTTCTATGAACTCAGGGGATATAAAAATATA
AATACAAAGATGAATTTATGTCTAGAAAGCACCAATGAAGAATGTCTGAGTAGATGAAGGCTAG
TCTTTAATGTCTTGAAGTAGCCGCAGTCCCACCGCTGTTAGCTGTGTGCTGTAGCCGTGTAGGC
TTCTGGATGTCTGGCTGCCAGCTGCTGCATATAAATTAACTAGGAATGGCCTTCGGCAGCGCAG
CACTCAGGCAGAAAAGTGAGCTTCAGCTATACTTAGAGCTATGCTTAAAGAAAAACACCTAGTT
CATGGGGAAGTCCAAATTACATACGGCACAAGTCAGAAAACAGTAATAAAAACAAAGATAAGGT
AAAACTGTA

hide sequence

RefSeq Acc Id:

XM_039112504 ⟹ XP_038968432

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	93,941,677 - 93,959,932 (+)	NCBI
mRatBN7.2	6	88,205,580 - 88,223,934 (+)	NCBI

RefSeq Acc Id:

XM_039112505 ⟹ XP_038968433

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	93,941,677 - 93,959,932 (+)	NCBI
mRatBN7.2	6	88,205,580 - 88,223,934 (+)	NCBI

RefSeq Acc Id:

XM_063262116 ⟹ XP_063118186

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	93,941,667 - 93,956,593 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001007750	(Get FASTA)	NCBI Sequence Viewer
	XP_006240236	(Get FASTA)	NCBI Sequence Viewer
	XP_006240237	(Get FASTA)	NCBI Sequence Viewer
	XP_006240238	(Get FASTA)	NCBI Sequence Viewer
	XP_038968432	(Get FASTA)	NCBI Sequence Viewer
	XP_038968433	(Get FASTA)	NCBI Sequence Viewer
	XP_063118186	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83655	(Get FASTA)	NCBI Sequence Viewer
	EDM03527	(Get FASTA)	NCBI Sequence Viewer
	EDM03528	(Get FASTA)	NCBI Sequence Viewer
	EDM03529	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000006509
	ENSRNOP00000006509.4
	ENSRNOP00000101455
GenBank Protein	Q5XIM4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001007750 ⟸ NM_001007749
- Peptide Label:	precursor
- UniProtKB:	Q5XIM4 (UniProtKB/Swiss-Prot), A6HBX3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMMFGKISRQLFSLKKIPWSCDSRYFWEWLNTVFNKVDYERIKDVGPDRAASEWLLRCGAKVRY CGHQKWLQDYNKLPGGSVDRYKIQAIDATDSCIMDIGFDHLVGLEHVERITLCRCHYIEDNCLQ RLSQLENLRKSLLELEIIACGNVTDNGVIALRHFKNLKYLFLSDLPGIKDKEYLAEVFTKALPS LELKLNLK hide sequence

RefSeq Acc Id:	XP_006240238 ⟸ XM_006240176
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIM4 (UniProtKB/Swiss-Prot), A6HBX3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMMFGKISRQLFSLKKIPWSCDSRYFWEWLNTVFNKVDYERIKDVGPDRAASEWLLRCGAKVRY CGHQKWLQDYNKLPGGSVDRYKIQAIDATDSCIMDIGFDHLVGLEHVERITLCRCHYIEDNCLQ RLSQLENLRKSLLELEIIACGNVTDNGVIALRHFKNLKYLFLSDLPGIKDKEYLAEVFTKALPS LELKLNLK hide sequence

RefSeq Acc Id:	XP_006240236 ⟸ XM_006240174
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIM4 (UniProtKB/Swiss-Prot), A6HBX3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMMFGKISRQLFSLKKIPWSCDSRYFWEWLNTVFNKVDYERIKDVGPDRAASEWLLRCGAKVRY CGHQKWLQDYNKLPGGSVDRYKIQAIDATDSCIMDIGFDHLVGLEHVERITLCRCHYIEDNCLQ RLSQLENLRKSLLELEIIACGNVTDNGVIALRHFKNLKYLFLSDLPGIKDKEYLAEVFTKALPS LELKLNLK hide sequence

RefSeq Acc Id:	XP_006240237 ⟸ XM_006240175
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIM4 (UniProtKB/Swiss-Prot), A6HBX3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMMFGKISRQLFSLKKIPWSCDSRYFWEWLNTVFNKVDYERIKDVGPDRAASEWLLRCGAKVRY CGHQKWLQDYNKLPGGSVDRYKIQAIDATDSCIMDIGFDHLVGLEHVERITLCRCHYIEDNCLQ RLSQLENLRKSLLELEIIACGNVTDNGVIALRHFKNLKYLFLSDLPGIKDKEYLAEVFTKALPS LELKLNLK hide sequence

Ensembl Acc Id:

ENSRNOP00000006509 ⟸ ENSRNOT00000006509

RefSeq Acc Id:	XP_038968432 ⟸ XM_039112504
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038968433 ⟸ XM_039112505
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063118186 ⟸ XM_063262116
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000101455 ⟸ ENSRNOT00000132134

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XIM4-F1-model_v2	AlphaFold	Q5XIM4	1-200	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694639

Promoter ID:

EPDNEW_R5162

Type:

multiple initiation site

Name:

Atp5s_1

Description:

ATP synthase, H+ transporting, mitochondrial Fo complex, subunits

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	92,057,798 - 92,057,858	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359208	AgrOrtholog
BioCyc Gene	G2FUF-37226	BioCyc
BioCyc Pathway	PWY-7980 [ATP biosynthesis]	BioCyc
BioCyc Pathway Image	PWY-7980	BioCyc
Ensembl Genes	ENSRNOG00000004893	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000006509	ENTREZGENE
	ENSRNOT00000006509.6	UniProtKB/Swiss-Prot
	ENSRNOT00000132134	ENTREZGENE
Gene3D-CATH	3.80.10.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7135201	IMAGE-MGC_LOAD
InterPro	LRR_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:362749	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94488	IMAGE-MGC_LOAD
NCBI Gene	362749	ENTREZGENE
PhenoGen	Dmac2l	PhenoGen
RatGTEx	ENSRNOG00000004893	RatGTEx
Superfamily-SCOP	RNI-like	UniProtKB/Swiss-Prot
UniProt	A0ABK0L0D4_RAT	UniProtKB/TrEMBL
	A6HBX3	ENTREZGENE, UniProtKB/TrEMBL
	ATP5S_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-02-18	Dmac2l	distal membrane arm assembly component 2 like	Dmac2l	distal membrane arm assembly complex 2 like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2018-09-06	Dmac2l	distal membrane arm assembly complex 2 like	Atp5s	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-12-01	Atp5s	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)	Atp5s	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s (factor B)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-25	Atp5s	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s (factor B)	Atp5s	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-03	Atp5s	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s	Atp5s	mitochondrial ATP synthase regulatory component factor B	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-29	Atp5s	mitochondrial ATP synthase regulatory component factor B			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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