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Gene: C1qtnf1 (C1q and TNF related 1) Rattus norvegicus

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Symbol:

C1qtnf1

Name:

C1q and TNF related 1

RGD ID:

1359204

Description:

Predicted to enable collagen binding activity and identical protein binding activity. Predicted to be involved in several processes, including negative regulation of platelet aggregation; positive regulation of aldosterone secretion; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within positive regulation of MAPK cascade; positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction; and regulation of glucose metabolic process. Predicted to be located in plasma membrane. Predicted to be part of collagen trimer. Predicted to be active in extracellular space. Orthologous to human C1QTNF1 (C1q and TNF related 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

C1q and tumor necrosis factor related protein 1; complement C1q tumor necrosis factor-related protein 1; Ctrp1; MGC94614

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	C1QTNF1 (C1q and TNF related 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, PhylomeDB, Treefam
Mus musculus (house mouse):	C1qtnf1 (C1q and tumor necrosis factor related protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	C1qtnf1 (C1q and TNF related 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	C1QTNF1 (C1q and TNF related 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	C1QTNF1 (C1q and TNF related 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	C1qtnf1 (C1q and TNF related 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	C1QTNF1 (C1q and TNF related 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	C1QTNF1 (C1q and TNF related 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	C1qtnf1 (C1q and TNF related 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	C1qtnf1 (C1q and TNF related 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	C1QTNF1 (C1q and TNF related 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	C1qtnf1 (C1q and tumor necrosis factor related protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	c1qtnf1 (C1q and TNF related 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	c1qtnf1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	c1qtnf1	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	104,159,021 - 104,180,253 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	104,158,886 - 104,180,251 (+)	Ensembl				GRCr8
mRatBN7.2	10	103,660,319 - 103,681,662 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	103,660,327 - 103,681,660 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	108,761,558 - 108,781,641 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	108,224,596 - 108,244,679 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	103,581,120 - 103,601,234 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	107,455,845 - 107,477,160 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	107,455,845 - 107,477,162 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	107,090,843 - 107,112,158 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	108,431,984 - 108,452,099 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	102,220,917 - 102,241,022 (+)	NCBI		Celera
RGSC_v3.1	10	108,446,487 - 108,466,600 (+)	NCBI
Cytogenetic Map	10	q32.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

basal cell carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

alpha-Zearalanol (EXP)

amitrole (EXP)

atrazine (EXP)

benzo[a]pyrene (ISO)

beta-naphthoflavone (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

bisphenol F (ISO)

C60 fullerene (EXP)

cadmium dichloride (ISO)

carbon nanotube (ISO)

cefaloridine (EXP)

chromium(6+) (ISO)

clotrimazole (EXP)

cobalt dichloride (EXP)

cocaine (EXP)

copper(II) chloride (ISO)

cyclosporin A (ISO)

DDE (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP)

doxorubicin (ISO)

endosulfan (EXP)

folic acid (ISO)

gentamycin (EXP)

graphite (EXP)

indometacin (ISO)

lipopolysaccharide (ISO)

methimazole (EXP)

monosodium L-glutamate (ISO)

nickel atom (ISO)

organophosphorus compound (EXP)

oxaliplatin (EXP)

paracetamol (EXP)

perfluorononanoic acid (ISO)

perfluorooctanoic acid (EXP)

permethrin (ISO)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sulforaphane (ISO)

sunitinib (ISO)

thioacetamide (EXP)

thiram (ISO)

topotecan (EXP)

triptonide (ISO)

valdecoxib (EXP)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of platelet activation (ISO)

negative regulation of platelet aggregation (ISO)

positive regulation of aldosterone secretion (ISO)

positive regulation of cytosolic calcium ion concentration (ISO)

positive regulation of gene expression (ISO)

positive regulation of MAPK cascade (ISO)

positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ISO)

regulation of glucose metabolic process (ISO)

Cellular Component

extracellular region (IEA)

extracellular space (IBA,ISO)

plasma membrane (ISO)

Molecular Function

collagen binding (ISO)

identical protein binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
7.	A family of Acrp30/adiponectin structural and functional paralogs.	Wong GW, etal., Proc Natl Acad Sci U S A 2004 Jul 13;101(28):10302-7. Epub 2004 Jul 1.

Additional References at PubMed

PMID:12409230	PMID:16195328	PMID:16806199	PMID:18171693	PMID:18783346

Genomics

Comparative Map Data

C1qtnf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	104,159,021 - 104,180,253 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	104,158,886 - 104,180,251 (+)	Ensembl				GRCr8
mRatBN7.2	10	103,660,319 - 103,681,662 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	103,660,327 - 103,681,660 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	108,761,558 - 108,781,641 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	108,224,596 - 108,244,679 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	103,581,120 - 103,601,234 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	107,455,845 - 107,477,160 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	107,455,845 - 107,477,162 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	107,090,843 - 107,112,158 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	108,431,984 - 108,452,099 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	102,220,917 - 102,241,022 (+)	NCBI		Celera
RGSC_v3.1	10	108,446,487 - 108,466,600 (+)	NCBI
Cytogenetic Map	10	q32.3	NCBI

C1QTNF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	79,022,934 - 79,049,788 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	79,022,729 - 79,049,788 (+)	Ensembl			hg38	GRCh38
GRCh37	17	77,019,016 - 77,045,870 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	74,531,846 - 74,557,465 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	17	74,531,845 - 74,557,464	NCBI
Celera	17	73,618,468 - 73,644,096 (+)	NCBI		Celera
Cytogenetic Map	17	q25.3	NCBI
HuRef	17	72,441,799 - 72,468,640 (+)	NCBI		HuRef
CHM1_1	17	77,082,932 - 77,109,786 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	79,917,861 - 79,944,721 (+)	NCBI		T2T-CHM13v2.0

C1qtnf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	118,319,187 - 118,342,608 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	118,319,029 - 118,340,789 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	118,428,457 - 118,451,782 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	118,428,203 - 118,449,963 (+)	Ensembl			mm10	GRCm38
MGSCv37	11	118,295,167 - 118,311,277 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	118,249,943 - 118,266,053 (+)	NCBI		MGSCv36	mm8
Celera	11	130,179,331 - 130,195,511 (+)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	83.17	NCBI

C1qtnf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955506	3,679,704 - 3,699,503 (-)	Ensembl
ChiLan1.0	NW_004955506	3,680,352 - 3,700,729 (-)	NCBI	ChiLan1.0	ChiLan1.0

C1QTNF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	95,073,191 - 95,098,826 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	99,903,376 - 99,928,875 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	73,099,560 - 73,126,304 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	78,643,266 - 78,669,386 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	78,644,531 - 78,669,386 (+)	Ensembl			panPan2	panpan1.1

C1QTNF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	2,401,369 - 2,405,595 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	2,402,945 - 2,404,053 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	3,057,639 - 3,079,084 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	3,051,068 - 3,072,567 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	3,051,071 - 3,172,095 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	3,073,500 - 3,094,974 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	3,199,280 - 3,220,753 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	3,280,188 - 3,301,647 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

C1qtnf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	3,053,822 - 3,073,040 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936594	3,338,774 - 3,358,985 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936594	3,338,863 - 3,358,137 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C1QTNF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	3,161,360 - 3,170,076 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	12	3,161,355 - 3,181,470 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

C1QTNF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	70,993,035 - 71,018,240 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	70,992,936 - 71,018,327 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666077	42,238,361 - 42,280,027 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

C1qtnf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624801	8,349,713 - 8,368,421 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624801	8,349,894 - 8,368,168 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

C1qtnf1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	65,612,174 - 65,634,256 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in C1qtnf1
189 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	536
Count of miRNA genes:	239
Interacting mature miRNAs:	303
Transcripts:	ENSRNOT00000004373
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7387312	Bw125	Body weight QTL 125	3	0.0047	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight (CMO:0000356)	10	65390777	107713808	Rat
1354641	Bvd2	Brain ventricular dilatation QTL 2	6.36	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	10	93723381	107556066	Rat
8657410	Bp374	Blood pressure QTL 374			heart left ventricle size trait (VT:0002753)	heart left ventricle end-diastolic diameter (CMO:0000982)	10	67476608	107713808	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63719161	107713808	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	52269185	107713808	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42546145	107713808	Rat
12903252	Cm113	Cardiac mass QTL 113		0.047	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68920187	107713808	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	64939013	107713808	Rat
1358915	Stresp7	Stress response QTL 7	3.52		blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	65307813	107713808	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76951790	107713808	Rat
70168	Eae12	Experimental allergic encephalomyelitis QTL 12		0.0009	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	73599825	107713808	Rat
634320	Niddm49	Non-insulin dependent diabetes mellitus QTL 49	4.41		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	10	89039175	107713808	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	54296227	107713808	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61843496	106843496	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70698731	107713808	Rat
12903269	Am15	Aortic mass QTL 15		0.042	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
1576313	Pia25	Pristane induced arthritis QTL 25			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	96620293	107713808	Rat
12903266	Cm114	Cardiac mass QTL 114		0.02	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	66817119	107713808	Rat
1578672	Bmd16	Bone mineral density QTL 16	6.2		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	97202388	107556066	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1576307	Cia28	Collagen induced arthritis QTL 28			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	96620293	107713808	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40535708	107713808	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62556066	107556066	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1581559	Eae18	Experimental allergic encephalomyelitis QTL 18		0.00002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	66108888	107555881	Rat
12880372	Am12	Aortic mass QTL 12		0.003	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62556066	107556066	Rat
12880375	Kidm66	Kidney mass QTL 66		0.009	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
61363	Oia3	Oil induced arthritis QTL 3		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87807758	107713808	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
12880370	Cm105	Cardiac mass QTL 105		0.008	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
12880371	Cm106	Cardiac mass QTL 106		0.007	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
631537	Oia4	Oil induced arthritis QTL 4			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	76128947	107713808	Rat
1300137	Bp186	Blood pressure QTL 186	3.57		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	10	91127270	107556066	Rat
634354	Rends3	Renal damage susceptibility QTL 3		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	10	61997479	106997479	Rat
61436	Cia5	Collagen induced arthritis QTL 5	4.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	91727883	107713808	Rat
11565453	Kidm58	Kidney mass QTL 58		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
2301405	Cm69	Cardiac mass QTL 69		0.031	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
1578663	Bss18	Bone structure and strength QTL 18	3.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	10	97202388	107556066	Rat

Markers in Region

RH129049

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	103,681,377 - 103,681,557 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	107,476,876 - 107,477,055	NCBI	Rnor6.0
Rnor_5.0	10	107,111,874 - 107,112,053	UniSTS	Rnor5.0
RGSC_v3.4	10	108,452,932 - 108,453,111	UniSTS	RGSC3.4
Celera	10	102,241,855 - 102,242,034	UniSTS
Cytogenetic Map	10	q32.3	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	159	91	90	59	77	59	6	339	177	11	138	79	92	31	16	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001007675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247800	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247801	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ209955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004373 ⟹ ENSRNOP00000004373

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	107,455,845 - 107,476,036 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087404 ⟹ ENSRNOP00000070390

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	104,158,886 - 104,180,251 (+)	Ensembl
mRatBN7.2 Ensembl	10	103,660,327 - 103,681,660 (+)	Ensembl
Rnor_6.0 Ensembl	10	107,469,377 - 107,477,162 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000140661 ⟹ ENSRNOP00000099350

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	104,168,623 - 104,180,251 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000154916 ⟹ ENSRNOP00000105698

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	104,159,038 - 104,180,251 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000166764 ⟹ ENSRNOP00000109854

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	104,173,172 - 104,180,251 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000168518 ⟹ ENSRNOP00000110327

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	104,164,190 - 104,180,251 (+)	Ensembl

RefSeq Acc Id:

NM_001007675 ⟹ NP_001007676

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	104,159,021 - 104,179,136 (+)	NCBI
mRatBN7.2	10	103,660,428 - 103,680,545 (+)	NCBI
Rnor_6.0	10	107,455,845 - 107,476,043 (+)	NCBI
Rnor_5.0	10	107,090,843 - 107,112,158 (+)	NCBI
RGSC_v3.4	10	108,431,984 - 108,452,099 (+)	RGD
Celera	10	102,220,917 - 102,241,022 (+)	RGD

Sequence:

show sequence

GGAGGCAGCTGAGGAGATAAAGGTGTTGGGACTGCTGTGGCTTGCACTTCCCACACCCTTTCCT
CCCCCTAAAGCCCCCCCCCGGGGGGGGGACTTTTTTCTCCCTAGGGCTTTCTCTCTCAGCTTTG
ACACGTCTGTGCTTCCCCTCTGACCTAGCCTAGAAAAAGGCTCAGCCCCTGGGAGATGCTTTAA
GAGACCACTTCTCGAGAGCCCTGAGAGGCGGGAGGATTCGATTGGCACAGCCGGCTCAGCTGGA
AGGAGGAAGATGGGCTCCCGTGGACAGGGATTCATGCTGGGATGCTGCCTGCTGCTGGCTGTCA
CCTGGGGCCCGGTCCTGAGCCTTGTGCCACGAGTTCAGGAGGAACAACAGGAGTGGGAAGAGAC
AGAGGAGCTGACATCTCCCCTGGATCATGTGACAAGGCCTGAAGAAACACACAAGAGGTATAGC
CCTAGCCTGCGTGAGGGCCTCCCCACTTCCCGGTGCTATCGATGCTGTGATTCCAACCCTCCAG
TATACCAGACAATCCCTCCGCCCCAGATCAACATCACCATCCTAAAAGGTGAGAAAGGAGACCG
AGGGGATCGAGGCCTGCAGGGGAAGTATGGCAAAATAGGTTCTACGGGTCCCAGGGGCCACATT
GGCCCCAAAGGGCAGAAGGGATCTATGGGAGCCCCTGGGGACCACTGCAAGAGCCAGTACGCAG
CCTTCTCTGTGGGCCGAAAGAAGGCTCTGCACAGTAACGACTACTTCCAGCCTGTGGTCTTCGA
CACGGAGTTTGTGAACCTCTACAATCACTTCAACATGTTCACCGGGAAGTTCTACTGCTACGTG
CCCGGCATCTACTTCTTCAGCCTCAACGTGCACACGTGGAACCAGAAGGAGACCTACCTGCACA
TCATGAAGAACGAGGAGGAGGTCGTGATCCTGTATGCGCAGGTGAGCGACCGCAGCATCATGCA
GAGTCAGAGCCTGATGCTGGAGCTGCGAGAGCAGGATGAGGTATGGGTGCGCCTCTTCAAGGGC
GAGCGTGAGAACGCCATCTTCAGTGACGAGTTCGACACCTACATCACCTTCAGCGGCTACCTGG
TCAAGCCGGCCTCCGAGCCCTAGCGGACACCCCTTGGAGCTTCCACGGACTTCTGACCTCCTTG
CCTGTCACCTGGCTTATCCCTGCATTCTACGGACACTGGAGTCCTGCCCCAGGCTGACCCCGTT
ACCTCTCTCCTCCATCCCGGCTTCCTTGGCCTTGACTTCCTCAGTTTTGGTTTTTGACAAGATG
CCCTTGGCCACCGGGAAGCCCAAAGGTCCCGGATCTGGCTGCCGATGGATGAGATCATTGGGCG
GGGAGACTGTGTGGACATTGGGGGACCTCCAGCTTCTCCTGTGTACACAGCCTTAGACGACCCT
GTGCTGTGTTGTCCTGTGGCCACAGGGTGTTCCAGAGCACAGCCCCTGTGTGTTTTCATTCCTG
GACGCAAGTAAGCAAAGGTCGTGGGTTTCTTAGGGACGAAGTAAAGCAGAAAAGAGAAAGAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006247800 ⟹ XP_006247862

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	104,173,374 - 104,180,253 (+)	NCBI
mRatBN7.2	10	103,674,774 - 103,681,662 (+)	NCBI
Rnor_6.0	10	107,470,271 - 107,477,160 (+)	NCBI
Rnor_5.0	10	107,090,843 - 107,112,158 (+)	NCBI

Sequence:

show sequence

AGGTGGCATGCAGAGCACTATCAGCAGACCCTTGGCAGCACTGGGGTGTGTTGAAAACACAGAG
CCCGGAGGCCCTGGTCTGGTCAGCCGAACGAGAAGCCGAAGCTTAAGAGGAATCCTAGATGTGA
GAAGCCAAAGGCTGGACCATAGACTGAGGAAGATGGGCTCCCGTGGACAGGGATTCATGCTGGG
ATGCTGCCTGCTGCTGGCTGTCACCTGGGGCCCGGTCCTGAGCCTTGTGCCACGAGTTCAGGAG
GAACAACAGGAGTGGGAAGAGACAGAGGAGCTGACATCTCCCCTGGATCATGTGACAAGGCCTG
AAGAAACACACAAGAGGTATAGCCCTAGCCTGCGTGAGGGCCTCCCCACTTCCCGGTGCTATCG
ATGCTGTGATTCCAACCCTCCAGTATACCAGACAATCCCTCCGCCCCAGATCAACATCACCATC
CTAAAAGGTGAGAAAGGAGACCGAGGGGATCGAGGCCTGCAGGGGAAGTATGGCAAAATAGGTT
CTACGGGTCCCAGGGGCCACATTGGCCCCAAAGGGCAGAAGGGATCTATGGGAGCCCCTGGGGA
CCACTGCAAGAGCCAGTACGCAGCCTTCTCTGTGGGCCGAAAGAAGGCTCTGCACAGTAACGAC
TACTTCCAGCCTGTGGTCTTCGACACGGAGTTTGTGAACCTCTACAATCACTTCAACATGTTCA
CCGGGAAGTTCTACTGCTACGTGCCCGGCATCTACTTCTTCAGCCTCAACGTGCACACGTGGAA
CCAGAAGGAGACCTACCTGCACATCATGAAGAACGAGGAGGAGGTCGTGATCCTGTATGCGCAG
GTGAGCGACCGCAGCATCATGCAGAGTCAGAGCCTGATGCTGGAGCTGCGAGAGCAGGATGAGG
TATGGGTGCGCCTCTTCAAGGGCGAGCGTGAGAACGCCATCTTCAGTGACGAGTTCGACACCTA
CATCACCTTCAGCGGCTACCTGGTCAAGCCGGCCTCCGAGCCCTAGCGGACACCCCTTGGAGCT
TCCACGGACTTCTGACCTCCTTGCCTGTCACCTGGCTTATCCCTGCATTCTACGGACACTGGAG
TCCTGCCCCAGGCTGACCCCGTTACCTCTCTCCTCCATCCCGGCTTCCTTGGCCTTGACTTCCT
CAGTTTTGGTTTTTGACAAGATGCCCTTGGCCACCGGGAAGCCCAAAGGTCCCGGATCTGGCTG
CCGATGGATGAGATCATTGGGCGGGGAGACTGTGTGGACATTGGGGGACCTCCAGCTTCTCCTG
TGTACACAGCCTTAGACGACCCTGTGCTGTGTTGTCCTGTGGCCACAGGGTGTTCCAGAGCACA
GCCCCTGTGTGTTTTCATTCCTGGACGCAAGTAAGCAAAGGTCGTGGGTTTCTTAGGGACGAAG
TAAAGCAGAAAAGAGAAAGAAAGCTGGTGTGTTAGTTTTGGCTTTCCAGCCAGCTTGGAGAGAG
GAGGGTGGGGGTGTGTGTGTTTGTACTGGGGAAACTGAGGCACAGAAAAAGCATGAATGGCTAC
AGAGGAGCTGCAGTTTGTGAGTTTGGAAACCACATCTGACTTAGCTCCGGGCCGGGCTTTCCTG
GGGACAGCAGGACGGACTTCTGCGCTCTGTTGACATGCTAGAGCTTTCCCCAGTGGCTTGTCAG
TCTTTCAGAGTCACCCTAGCAAAAGGGTTGGGGGAGGGCAGCAAGTGTCCTCTATGGTTGACTC
TAGGCTGGTGGCAGCATCCTGCTTGCTCCAACTCACAGGATCCTGACAGTGGCTGGGGACCTCA
GGGACTCCTGCAGGTTTTCTCTATATGAGAAATAAAGCTCCTACTATGTGCCAGTACCTCTCAG
CTCTGCTCCACACTTCCCCAGCCACTCTGGAGCGCAGGACGGGTGGGCTTTCTTGCCTGTTGGG
GTCTCGGGTCCCCGTTCTTCCTTCCAGATGGACTAACCACGGAAGGACCAGGCCTCTGCTTTGG
GTGCCATCAAACCGCCCCTCACCGCCCTGTGTCCCGCTCCTTCCCAGTTCAGCATCCCATGTGG
GTATGTGAGCTGGTGAGTCTGATAGACCTGCCGAGCCCTGACACAGCCTCGCAGCCTATGGCCA
TGTGATAGGGACTTCCTTTGGGTCCCAGAGCTGGGGGCGGAGGTGTAAAAATCTTCCTAAGTGG
TAGAAGAGGAAACAGGAAATTCATATCCCGCTGCCAGCTCAGACTCAGGGATGGCCTCGGGGCT
GACTCTCTGATTGCAGAGAATCTGTGTTCATTTCCCATCTCACCCCAGGTTGATCCCCAGGGCC
CGGGCCACTGGATATCTGCTTTGTGCCAACTAGGCCTTGCTTGCTGCTTCCTGGTGGCCCTTGG
TTAGGATCCTTCTCCTTCTGGAGCTCAGTGTGTACGTAAGCCGCCTCCGAAGAGGCTTCTGCTG
GTCAGACACTCCAAGCCGCTTTCCGTGGGCGCGCCTACAGCAGAGGCTGCTGCCTCCTGTGCTC
TACCTTGCTCTTTCCGGAAAACATTAAACTCACCATGGAGATCCACAGCAA

hide sequence

RefSeq Acc Id:

XM_006247801 ⟹ XP_006247863

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	104,164,405 - 104,180,253 (+)	NCBI
mRatBN7.2	10	103,666,100 - 103,681,662 (+)	NCBI
Rnor_6.0	10	107,461,266 - 107,477,160 (+)	NCBI
Rnor_5.0	10	107,090,843 - 107,112,158 (+)	NCBI

Sequence:

show sequence

GGGAGCGGCCAATGCCCAAGGGAAGGTCGGCATCTTCCTGCCCTAGATGCTGCTAACATCAGCC
CACTGCCCTGCCCGGGGTGTGTTGCAGGCATTCATAAACAAATGTTCACGAAGGAGCGAAAGGA
TGTGGGATGTCAGGCTTCAGCAGGAGGATGATGTGTTTCTCAGCAGCTCCACGTGAGCCACGAA
TGCTTCACAATTCCTCCCTCCCCCTTGCCTGTCAGCTTTCCTATGCATAGCCAACTTCCCTGGA
ATAAACAAAAGGCTCTCTTGGTCCCCAGGGCGGGGCTTATTTTGTCTTTTCTAAGTGGAAAATA
ATGTGTACTTACTGCGAGGGAAGAGATGGGATTGTTGTAGGCGGAAAGAGGAAAACCCCCGGAG
AAGGCCAGGAAGATGGGCTCCCGTGGACAGGGATTCATGCTGGGATGCTGCCTGCTGCTGGCTG
TCACCTGGGGCCCGGTCCTGAGCCTTGTGCCACGAGTTCAGGAGGAACAACAGGAGTGGGAAGA
GACAGAGGAGCTGACATCTCCCCTGGATCATGTGACAAGGCCTGAAGAAACACACAAGAGGTAT
AGCCCTAGCCTGCGTGAGGGCCTCCCCACTTCCCGGTGCTATCGATGCTGTGATTCCAACCCTC
CAGTATACCAGACAATCCCTCCGCCCCAGATCAACATCACCATCCTAAAAGGTGAGAAAGGAGA
CCGAGGGGATCGAGGCCTGCAGGGGAAGTATGGCAAAATAGGTTCTACGGGTCCCAGGGGCCAC
ATTGGCCCCAAAGGGCAGAAGGGATCTATGGGAGCCCCTGGGGACCACTGCAAGAGCCAGTACG
CAGCCTTCTCTGTGGGCCGAAAGAAGGCTCTGCACAGTAACGACTACTTCCAGCCTGTGGTCTT
CGACACGGAGTTTGTGAACCTCTACAATCACTTCAACATGTTCACCGGGAAGTTCTACTGCTAC
GTGCCCGGCATCTACTTCTTCAGCCTCAACGTGCACACGTGGAACCAGAAGGAGACCTACCTGC
ACATCATGAAGAACGAGGAGGAGGTCGTGATCCTGTATGCGCAGGTGAGCGACCGCAGCATCAT
GCAGAGTCAGAGCCTGATGCTGGAGCTGCGAGAGCAGGATGAGGTATGGGTGCGCCTCTTCAAG
GGCGAGCGTGAGAACGCCATCTTCAGTGACGAGTTCGACACCTACATCACCTTCAGCGGCTACC
TGGTCAAGCCGGCCTCCGAGCCCTAGCGGACACCCCTTGGAGCTTCCACGGACTTCTGACCTCC
TTGCCTGTCACCTGGCTTATCCCTGCATTCTACGGACACTGGAGTCCTGCCCCAGGCTGACCCC
GTTACCTCTCTCCTCCATCCCGGCTTCCTTGGCCTTGACTTCCTCAGTTTTGGTTTTTGACAAG
ATGCCCTTGGCCACCGGGAAGCCCAAAGGTCCCGGATCTGGCTGCCGATGGATGAGATCATTGG
GCGGGGAGACTGTGTGGACATTGGGGGACCTCCAGCTTCTCCTGTGTACACAGCCTTAGACGAC
CCTGTGCTGTGTTGTCCTGTGGCCACAGGGTGTTCCAGAGCACAGCCCCTGTGTGTTTTCATTC
CTGGACGCAAGTAAGCAAAGGTCGTGGGTTTCTTAGGGACGAAGTAAAGCAGAAAAGAGAAAGA
AAGCTGGTGTGTTAGTTTTGGCTTTCCAGCCAGCTTGGAGAGAGGAGGGTGGGGGTGTGTGTGT
TTGTACTGGGGAAACTGAGGCACAGAAAAAGCATGAATGGCTACAGAGGAGCTGCAGTTTGTGA
GTTTGGAAACCACATCTGACTTAGCTCCGGGCCGGGCTTTCCTGGGGACAGCAGGACGGACTTC
TGCGCTCTGTTGACATGCTAGAGCTTTCCCCAGTGGCTTGTCAGTCTTTCAGAGTCACCCTAGC
AAAAGGGTTGGGGGAGGGCAGCAAGTGTCCTCTATGGTTGACTCTAGGCTGGTGGCAGCATCCT
GCTTGCTCCAACTCACAGGATCCTGACAGTGGCTGGGGACCTCAGGGACTCCTGCAGGTTTTCT
CTATATGAGAAATAAAGCTCCTACTATGTGCCAGTACCTCTCAGCTCTGCTCCACACTTCCCCA
GCCACTCTGGAGCGCAGGACGGGTGGGCTTTCTTGCCTGTTGGGGTCTCGGGTCCCCGTTCTTC
CTTCCAGATGGACTAACCACGGAAGGACCAGGCCTCTGCTTTGGGTGCCATCAAACCGCCCCTC
ACCGCCCTGTGTCCCGCTCCTTCCCAGTTCAGCATCCCATGTGGGTATGTGAGCTGGTGAGTCT
GATAGACCTGCCGAGCCCTGACACAGCCTCGCAGCCTATGGCCATGTGATAGGGACTTCCTTTG
GGTCCCAGAGCTGGGGGCGGAGGTGTAAAAATCTTCCTAAGTGGTAGAAGAGGAAACAGGAAAT
TCATATCCCGCTGCCAGCTCAGACTCAGGGATGGCCTCGGGGCTGACTCTCTGATTGCAGAGAA
TCTGTGTTCATTTCCCATCTCACCCCAGGTTGATCCCCAGGGCCCGGGCCACTGGATATCTGCT
TTGTGCCAACTAGGCCTTGCTTGCTGCTTCCTGGTGGCCCTTGGTTAGGATCCTTCTCCTTCTG
GAGCTCAGTGTGTACGTAAGCCGCCTCCGAAGAGGCTTCTGCTGGTCAGACACTCCAAGCCGCT
TTCCGTGGGCGCGCCTACAGCAGAGGCTGCTGCCTCCTGTGCTCTACCTTGCTCTTTCCGGAAA
ACATTAAACTCACCATGGAGATCCACAGCAA

hide sequence

RefSeq Acc Id:

XM_063269243 ⟹ XP_063125313

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	104,164,218 - 104,180,253 (+)	NCBI

RefSeq Acc Id:

XM_063269244 ⟹ XP_063125314

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	104,159,554 - 104,180,253 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001007676	(Get FASTA)	NCBI Sequence Viewer
	XP_006247862	(Get FASTA)	NCBI Sequence Viewer
	XP_006247863	(Get FASTA)	NCBI Sequence Viewer
	XP_063125313	(Get FASTA)	NCBI Sequence Viewer
	XP_063125314	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83720	(Get FASTA)	NCBI Sequence Viewer
	EDM06763	(Get FASTA)	NCBI Sequence Viewer
	EDM06764	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000070390
	ENSRNOP00000070390.2
	ENSRNOP00000109854
	ENSRNOP00000110327
GenBank Protein	Q5XIG2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001007676 ⟸ NM_001007675
- Peptide Label:	precursor
- UniProtKB:	Q5XIG2 (UniProtKB/Swiss-Prot), A6HL59 (UniProtKB/TrEMBL), A0A0G2JXS9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSRGQGFMLGCCLLLAVTWGPVLSLVPRVQEEQQEWEETEELTSPLDHVTRPEETHKRYSPSL REGLPTSRCYRCCDSNPPVYQTIPPPQINITILKGEKGDRGDRGLQGKYGKIGSTGPRGHIGPK GQKGSMGAPGDHCKSQYAAFSVGRKKALHSNDYFQPVVFDTEFVNLYNHFNMFTGKFYCYVPGI YFFSLNVHTWNQKETYLHIMKNEEEVVILYAQVSDRSIMQSQSLMLELREQDEVWVRLFKGERE NAIFSDEFDTYITFSGYLVKPASEP hide sequence

RefSeq Acc Id:	XP_006247863 ⟸ XM_006247801
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIG2 (UniProtKB/Swiss-Prot), A6HL59 (UniProtKB/TrEMBL), A0A0G2JXS9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSRGQGFMLGCCLLLAVTWGPVLSLVPRVQEEQQEWEETEELTSPLDHVTRPEETHKRYSPSL REGLPTSRCYRCCDSNPPVYQTIPPPQINITILKGEKGDRGDRGLQGKYGKIGSTGPRGHIGPK GQKGSMGAPGDHCKSQYAAFSVGRKKALHSNDYFQPVVFDTEFVNLYNHFNMFTGKFYCYVPGI YFFSLNVHTWNQKETYLHIMKNEEEVVILYAQVSDRSIMQSQSLMLELREQDEVWVRLFKGERE NAIFSDEFDTYITFSGYLVKPASEP hide sequence

RefSeq Acc Id:	XP_006247862 ⟸ XM_006247800
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIG2 (UniProtKB/Swiss-Prot), A0A0G2JXS9 (UniProtKB/TrEMBL), A6HL59 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQSTISRPLAALGCVENTEPGGPGLVSRTRSRSLRGILDVRSQRLDHRLRKMGSRGQGFMLGCC LLLAVTWGPVLSLVPRVQEEQQEWEETEELTSPLDHVTRPEETHKRYSPSLREGLPTSRCYRCC DSNPPVYQTIPPPQINITILKGEKGDRGDRGLQGKYGKIGSTGPRGHIGPKGQKGSMGAPGDHC KSQYAAFSVGRKKALHSNDYFQPVVFDTEFVNLYNHFNMFTGKFYCYVPGIYFFSLNVHTWNQK ETYLHIMKNEEEVVILYAQVSDRSIMQSQSLMLELREQDEVWVRLFKGERENAIFSDEFDTYIT FSGYLVKPASEP hide sequence

Ensembl Acc Id:

ENSRNOP00000004373 ⟸ ENSRNOT00000004373

Ensembl Acc Id:

ENSRNOP00000070390 ⟸ ENSRNOT00000087404

RefSeq Acc Id:	XP_063125314 ⟸ XM_063269244
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIG2 (UniProtKB/Swiss-Prot), A0A0G2JXS9 (UniProtKB/TrEMBL), A6HL59 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125313 ⟸ XM_063269243
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JXS9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000109854 ⟸ ENSRNOT00000166764

Ensembl Acc Id:

ENSRNOP00000099350 ⟸ ENSRNOT00000140661

Ensembl Acc Id:

ENSRNOP00000105698 ⟸ ENSRNOT00000154916

Ensembl Acc Id:

ENSRNOP00000110327 ⟸ ENSRNOT00000168518

Protein Domains

C1q Collagen-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XIG2-F1-model_v2	AlphaFold	Q5XIG2	1-281	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359204	AgrOrtholog
BioCyc Gene	G2FUF-22513	BioCyc
Ensembl Genes	ENSRNOG00000003259	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000087404	ENTREZGENE
	ENSRNOT00000087404.2	UniProtKB/Swiss-Prot
	ENSRNOT00000166764	ENTREZGENE
	ENSRNOT00000168518	ENTREZGENE
Gene3D-CATH	2.60.120.40	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7190841	IMAGE-MGC_LOAD
InterPro	C1q_dom	UniProtKB/Swiss-Prot
	Cerebellin_Synaptic_Org	UniProtKB/Swiss-Prot
	Collagen	UniProtKB/Swiss-Prot
	Tumour_necrosis_fac-like_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:303701	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94614	IMAGE-MGC_LOAD
NCBI Gene	303701	ENTREZGENE
PANTHER	CEREBELLIN-RELATED	UniProtKB/Swiss-Prot
	COMPLEMENT C1Q TUMOR NECROSIS FACTOR-RELATED PROTEIN 1	UniProtKB/Swiss-Prot
Pfam	C1q	UniProtKB/Swiss-Prot
	Collagen	UniProtKB/Swiss-Prot
PhenoGen	C1qtnf1	PhenoGen
PRINTS	COMPLEMNTC1Q	UniProtKB/Swiss-Prot
PROSITE	C1Q	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000003259	RatGTEx
SMART	C1Q	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF49842	UniProtKB/Swiss-Prot
UniProt	A0A0G2JXS9	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L653_RAT	UniProtKB/TrEMBL
	A0ABK0LJ02_RAT	UniProtKB/TrEMBL
	A0ABK0LXW4_RAT	UniProtKB/TrEMBL
	A6HL59	ENTREZGENE, UniProtKB/TrEMBL
	C1QT1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-03-09	C1qtnf1	C1q and TNF related 1	C1qtnf1	C1q and tumor necrosis factor related protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	C1qtnf1	C1q and tumor necrosis factor related protein 1			Symbol and Name status set to approved	1299863	APPROVED
2005-07-29	C1qtnf1	C1q and tumor necrosis factor related protein 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD