Cluap1 (clusterin associated protein 1) - Rat Genome Database

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Gene: Cluap1 (clusterin associated protein 1) Rattus norvegicus
Analyze
Symbol: Cluap1
Name: clusterin associated protein 1
RGD ID: 1359189
Description: Predicted to be involved in cilium assembly. Predicted to act upstream of or within axoneme assembly; embryonic morphogenesis; and smoothened signaling pathway. Predicted to be located in centrosome; ciliary base; and ciliary tip. Predicted to be part of intraciliary transport particle A and intraciliary transport particle B. Predicted to be active in cilium and microtubule organizing center. Orthologous to human CLUAP1 (clusterin associated protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: clusterin-associated protein 1; LOC363544; similar to 2610111M03Rik protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81012,094,346 - 12,159,440 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1012,094,346 - 12,131,693 (-)EnsemblGRCr8
mRatBN7.21011,587,963 - 11,619,711 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1011,588,017 - 11,619,711 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1016,295,737 - 16,327,424 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01015,784,569 - 15,816,256 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01011,453,379 - 11,485,011 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01011,847,058 - 11,878,792 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1011,847,102 - 11,878,792 (-)Ensemblrn6Rnor6.0
Rnor_5.01010,601,973 - 10,635,054 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41011,855,568 - 11,887,257 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1010,544,766 - 10,576,325 (-)NCBICelera
RGSC_v3.11011,855,568 - 11,887,257 (-)NCBI
Cytogenetic Map10q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:19253336   PMID:23351563   PMID:23742838   PMID:26980730  


Genomics

Comparative Map Data
Cluap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81012,094,346 - 12,159,440 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1012,094,346 - 12,131,693 (-)EnsemblGRCr8
mRatBN7.21011,587,963 - 11,619,711 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1011,588,017 - 11,619,711 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1016,295,737 - 16,327,424 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01015,784,569 - 15,816,256 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01011,453,379 - 11,485,011 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01011,847,058 - 11,878,792 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1011,847,102 - 11,878,792 (-)Ensemblrn6Rnor6.0
Rnor_5.01010,601,973 - 10,635,054 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41011,855,568 - 11,887,257 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1010,544,766 - 10,576,325 (-)NCBICelera
RGSC_v3.11011,855,568 - 11,887,257 (-)NCBI
Cytogenetic Map10q12NCBI
CLUAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38163,495,427 - 3,539,048 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl163,500,976 - 3,540,653 (+)Ensemblhg38GRCh38
GRCh37163,551,004 - 3,589,048 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36163,490,964 - 3,527,670 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34163,499,894 - 3,527,670NCBI
Celera163,757,743 - 3,794,429 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef163,520,603 - 3,558,683 (+)NCBIHuRef
CHM1_1163,551,027 - 3,589,092 (+)NCBICHM1_1
T2T-CHM13v2.0163,522,685 - 3,566,307 (+)NCBIT2T-CHM13v2.0
Cluap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39163,725,058 - 3,760,163 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl163,726,665 - 3,759,011 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38163,907,194 - 3,942,299 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl163,908,801 - 3,941,147 (+)Ensemblmm10GRCm38
MGSCv37163,909,009 - 3,941,147 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36163,824,237 - 3,856,375 (+)NCBIMGSCv36mm8
Celera164,539,502 - 4,571,888 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map162.3NCBI
Cluap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544213,842,784 - 13,885,860 (-)Ensembl
ChiLan1.0NW_00495544213,843,952 - 13,890,082 (-)NCBIChiLan1.0ChiLan1.0
CLUAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2184,027,273 - 4,067,311 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1167,811,403 - 7,848,615 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0162,423,563 - 2,461,486 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1163,600,370 - 3,637,622 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl163,600,370 - 3,637,622 (+)EnsemblpanPan2panpan1.1
CLUAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1637,708,258 - 37,746,361 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl637,708,089 - 37,746,398 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha639,036,799 - 39,075,099 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0637,923,070 - 37,961,524 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl637,922,685 - 37,961,546 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1637,706,194 - 37,744,496 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0637,599,500 - 37,637,821 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0638,010,068 - 38,048,339 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cluap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344105,899,050 - 105,939,837 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936694780,197 - 810,457 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936694779,399 - 810,534 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLUAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl338,716,431 - 38,753,748 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1338,716,562 - 38,753,743 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2339,989,049 - 40,023,350 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLUAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.153,196,257 - 3,236,912 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606827,581,557 - 27,620,335 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cluap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248241,300,137 - 1,351,129 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248241,299,426 - 1,352,019 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cluap1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1917,906,633 - 17,936,426 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cluap1
631 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:157
Count of miRNA genes:119
Interacting mature miRNAs:129
Transcripts:ENSRNOT00000064964
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10666111835509383Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10666092373950353Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10589381150893811Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10589381150893811Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10687714251877142Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135730538Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10130004247Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1092219745922197Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)10210370847103708Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10589381150893811Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10117749933Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138832698Rat

Markers in Region
RH132312  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21011,587,997 - 11,588,207 (+)MAPPERmRatBN7.2
mRatBN7.21469,420,244 - 69,420,457 (+)MAPPERmRatBN7.2
Rnor_6.01474,058,521 - 74,058,733NCBIRnor6.0
Rnor_6.01011,847,082 - 11,847,291NCBIRnor6.0
Rnor_5.01474,064,403 - 74,064,615UniSTSRnor5.0
Rnor_5.01010,601,997 - 10,602,206UniSTSRnor5.0
RGSC_v3.41011,855,549 - 11,855,758UniSTSRGSC3.4
RGSC_v3.41474,597,618 - 74,597,830UniSTSRGSC3.4
Celera1468,347,475 - 68,347,687UniSTS
Celera1010,544,747 - 10,544,956UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map10q12UniSTS
BF406341  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21011,621,456 - 11,621,591 (+)MAPPERmRatBN7.2
Rnor_6.01011,880,538 - 11,880,672NCBIRnor6.0
Rnor_5.01010,636,800 - 10,636,934UniSTSRnor5.0
RGSC_v3.41011,889,003 - 11,889,137UniSTSRGSC3.4
Celera1010,578,071 - 10,578,205UniSTS
Cytogenetic Map10q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001014225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC129669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000064964   ⟹   ENSRNOP00000062395
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1012,094,390 - 12,121,898 (-)Ensembl
mRatBN7.2 Ensembl1011,588,018 - 11,619,711 (-)Ensembl
Rnor_6.0 Ensembl1011,847,102 - 11,878,792 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000078577   ⟹   ENSRNOP00000071678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1012,094,346 - 12,124,875 (-)Ensembl
mRatBN7.2 Ensembl1011,588,017 - 11,618,484 (-)Ensembl
Rnor_6.0 Ensembl1011,847,291 - 11,877,584 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102976   ⟹   ENSRNOP00000089284
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1012,094,346 - 12,125,366 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109816   ⟹   ENSRNOP00000088045
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1012,094,346 - 12,124,875 (-)Ensembl
mRatBN7.2 Ensembl1011,588,017 - 11,618,484 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000144525   ⟹   ENSRNOP00000104434
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1012,094,346 - 12,131,693 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000156982   ⟹   ENSRNOP00000112862
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1012,094,346 - 12,131,661 (-)Ensembl
RefSeq Acc Id: NM_001014225   ⟹   NP_001014247
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81012,094,389 - 12,126,080 (-)NCBI
mRatBN7.21011,588,017 - 11,619,711 (-)NCBI
Rnor_6.01011,847,101 - 11,878,792 (-)NCBI
Rnor_5.01010,601,973 - 10,635,054 (-)NCBI
RGSC_v3.41011,855,568 - 11,887,257 (-)RGD
Celera1010,544,766 - 10,576,325 (-)RGD
Sequence:
RefSeq Acc Id: NM_001399473   ⟹   NP_001386402
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81012,094,346 - 12,124,875 (-)NCBI
mRatBN7.21011,587,974 - 11,618,506 (-)NCBI
RefSeq Acc Id: NM_001399474   ⟹   NP_001386403
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81012,094,346 - 12,124,875 (-)NCBI
mRatBN7.21011,587,974 - 11,618,506 (-)NCBI
RefSeq Acc Id: NM_001399475   ⟹   NP_001386404
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81012,094,346 - 12,124,875 (-)NCBI
mRatBN7.21011,587,974 - 11,618,506 (-)NCBI
RefSeq Acc Id: XM_008767517   ⟹   XP_008765739
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81012,094,384 - 12,124,847 (-)NCBI
mRatBN7.21011,587,963 - 11,618,518 (-)NCBI
Rnor_6.01011,847,058 - 11,877,717 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063269483   ⟹   XP_063125553
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81012,094,384 - 12,126,114 (-)NCBI
RefSeq Acc Id: XM_063269484   ⟹   XP_063125554
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81012,094,384 - 12,123,773 (-)NCBI
RefSeq Acc Id: XM_063269485   ⟹   XP_063125555
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81012,094,384 - 12,131,797 (-)NCBI
RefSeq Acc Id: XM_063269486   ⟹   XP_063125556
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81012,128,923 - 12,159,440 (-)NCBI
RefSeq Acc Id: XM_063269487   ⟹   XP_063125557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81012,128,923 - 12,149,089 (-)NCBI
RefSeq Acc Id: XM_063269488   ⟹   XP_063125558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81012,128,923 - 12,149,089 (-)NCBI
RefSeq Acc Id: XM_063269489   ⟹   XP_063125559
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81012,128,923 - 12,149,089 (-)NCBI
RefSeq Acc Id: XM_063269491   ⟹   XP_063125561
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81012,128,923 - 12,159,440 (-)NCBI
RefSeq Acc Id: NP_001014247   ⟸   NM_001014225
- Peptide Label: isoform 4
- UniProtKB: Q6AYJ5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008765739   ⟸   XM_008767517
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000071678   ⟸   ENSRNOT00000078577
Ensembl Acc Id: ENSRNOP00000062395   ⟸   ENSRNOT00000064964
Ensembl Acc Id: ENSRNOP00000088045   ⟸   ENSRNOT00000109816
RefSeq Acc Id: NP_001386404   ⟸   NM_001399475
- Peptide Label: isoform 3
- UniProtKB: A6K4U4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386403   ⟸   NM_001399474
- Peptide Label: isoform 2
- UniProtKB: A0A8I6A8I1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386402   ⟸   NM_001399473
- Peptide Label: isoform 1
- UniProtKB: A0A0G2K129 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125555   ⟸   XM_063269485
- Peptide Label: isoform X1
- UniProtKB: Q6AYJ5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063125553   ⟸   XM_063269483
- Peptide Label: isoform X1
- UniProtKB: Q6AYJ5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063125554   ⟸   XM_063269484
- Peptide Label: isoform X1
- UniProtKB: Q6AYJ5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063125561   ⟸   XM_063269491
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063125556   ⟸   XM_063269486
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063125559   ⟸   XM_063269489
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063125558   ⟸   XM_063269488
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063125557   ⟸   XM_063269487
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000104434   ⟸   ENSRNOT00000144525
Ensembl Acc Id: ENSRNOP00000112862   ⟸   ENSRNOT00000156982
Ensembl Acc Id: ENSRNOP00000089284   ⟸   ENSRNOT00000102976

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AYJ5-F1-model_v2 AlphaFold Q6AYJ5 1-402 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696984
Promoter ID:EPDNEW_R7507
Type:initiation region
Name:Cluap1_1
Description:clusterin associated protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01011,877,500 - 11,877,560EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359189 AgrOrtholog
BioCyc Gene G2FUF-25995 BioCyc
Ensembl Genes ENSRNOG00000007117 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000064964 ENTREZGENE
  ENSRNOT00000064964.3 UniProtKB/Swiss-Prot
  ENSRNOT00000078577 ENTREZGENE
  ENSRNOT00000109816 ENTREZGENE
  ENSRNOT00000144525 ENTREZGENE
IMAGE_CLONE IMAGE:7113868 IMAGE-MGC_LOAD
InterPro Clusterin-associated_protein-1 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93947 IMAGE-MGC_LOAD
NCBI Gene 363544 ENTREZGENE
PANTHER CLUSTERIN-ASSOCIATED PROTEIN 1 UniProtKB/Swiss-Prot
  PTHR21547 UniProtKB/Swiss-Prot
Pfam Cluap1 UniProtKB/Swiss-Prot
PhenoGen Cluap1 PhenoGen
RatGTEx ENSRNOG00000007117 RatGTEx
UniProt A0A0G2K129 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A7V0_RAT UniProtKB/TrEMBL
  A0A8I6A8I1 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L4P0_RAT UniProtKB/TrEMBL
  A0ABK0M5Y6_RAT UniProtKB/TrEMBL
  A6K4U4 ENTREZGENE, UniProtKB/TrEMBL
  CLUA1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Cluap1  clusterin associated protein 1  LOC363544  similar to 2610111M03Rik protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 LOC363544  similar to 2610111M03Rik protein      Symbol and Name status set to provisional 70820 PROVISIONAL