Vom1r40 (vomeronasal 1 receptor 40) - Rat Genome Database

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Gene: Vom1r40 (vomeronasal 1 receptor 40) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Vom1r40
Name: vomeronasal 1 receptor 40
RGD ID: 1359184
Description:
Type: protein-coding
Previously known as: V1rg1; vomernasal 1 receptor Vom1r40; vomeronasal 1 receptor, 40; vomeronasal 1 receptor, G1; vomeronasal V1r-type receptor V1rg1
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0167,660,337 - 67,661,329 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,660,337 - 67,661,329 (+)Ensemblrn6Rnor6.0
Rnor_5.0168,449,135 - 68,450,127 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4171,096,061 - 71,097,053 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera162,147,535 - 62,148,527 (+)NCBICelera
RGSC_v3.1171,174,171 - 71,175,164 (-)NCBI
Cytogenetic Map1q12NCBI



References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19952141   PMID:21873635  


Genomics

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:146
Count of miRNA genes:109
Interacting mature miRNAs:113
Transcripts:ENSRNOT00000046111, ENSRNOT00000052217
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

ectoderm
mesenchyme
mesoderm
musculoskeletal system
renal system
reproductive system
1 3 1 1 2 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001008904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000046111   ⟹   ENSRNOP00000042054
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl167,660,337 - 67,661,329 (+)Ensembl
RefSeq Acc Id: NM_001008904   ⟹   NP_001008904
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0167,660,337 - 67,661,329 (+)NCBI
Rnor_5.0168,449,135 - 68,450,127 (+)NCBI
RGSC_v3.4171,096,061 - 71,097,053 (-)RGD
Celera162,147,535 - 62,148,527 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001008904 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL75797 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001008904   ⟸   NM_001008904
- Sequence:
Ensembl Acc Id: ENSRNOP00000042054   ⟸   ENSRNOT00000046111

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359184 AgrOrtholog
Ensembl Genes ENSRNOG00000050887 Ensembl
NCBI Gene 494256 ENTREZGENE
PhenoGen Vom1r40 PhenoGen
RatGTEx ENSRNOG00000050887 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-06-08 Vom1r40  vomeronasal 1 receptor, 40  V1rg1  vomeronasal 1 receptor, G1  Symbol and Name updated 2325755 APPROVED
2008-07-23 V1rg1  vomeronasal 1 receptor, G1    vomeronasal 1 receptor, g1  Name updated 1299863 APPROVED
2005-07-29 V1rg1  vomeronasal 1 receptor, g1      Symbol and Name status set to provisional 70820 PROVISIONAL